Gene detail

Detailed information of amic_s0012.g134.t2 in Acropora microphthalma

Genomic Location: sc0000012_pilon:1822558...1839106
NR annotation: XP_015773860.1, PREDICTED: metabotropic glutamate receptor 2-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0012.g134.t2

ATGAAACGCGTGCAAGTTATGGTGCAAGCGATTGTCATTTTCATGGCTTCTGGTTTCACAGCGAGTGCTGTACAAGATGCTGACAAGAGCCGCTCCTATAAACCTGGTGACGTAATTCTAGGAGGTCTATTTCTTCTGCACTACTCTACAGACGAGGGTCACTGCGGCGATTTGTTCCCTATTGGCCTAGGTCATGTAGAGGCGATGGTATTTGCTATCAACAAAGTCAACGACAATCCCAAACTGCTACCAAATGTGACCCTTGGATATGACATTCGTGATTACTGTGAAATAATTACAAAGGCAATGAAACACACTTATGATTTCGTGCGACGAAACGAAATGGTTTTACACGCAAACAACGGATCGTGTTACAGTGGGCCGAATTCAAGGCGAGACGAAAGCCGACCGATTGCCGCAGTTATCGGGCCCACGGATTCTGGAAGTGCCATTGTTGTGGGCAGTTTACTGGAGGTAGCGGGAATTCCTGTGATCAGCCATTCGGCGACAAGCAACGAATTAAGCTCGGCACAATACCGCCATTTCTTTCGCACGGCACCACCAGATAATCAACAGGCCCGTGCAATGGCAGACATCATAGAACATTTCAACTGGAGCTACGTCGCTGTGGTTGCCATGGAAGATTCGTATGGTCGAAATGGAGCGAGGAAGGTAGAGACCGAAGCTGAGAAAAGGCAAACCTTTTGCGTTGCTTTTTCTGAATTTATTCCACGGCAAAAATACGGTGCTAAATTGGTAAGGGTTGTTGAAAAGGTCAAACACTTCCCAAACGTCCGAGTTGTCCTCTTGTGGCTTTTTGGTAGCTATGGTCGGCGGTTTCTGAAGGAGGTGGTTAAGCATAAGTTAGGTGACCGTACGTGGATTTTAAGTGATGCCTTAGCAACCGAAGATGATGTCTTTGTGGGTTTAGACGACGAGGAACAAAATGTTGTTCATGGTTCGCTGGGTGTACAGCCTCGACATTTAACACGGGATCAACATTTCGAGAGTTTTGTTATTCACAAATCAAAGAAAAATGAAGTCATTTGGTGGGAAGAACTTTTAAAACAGACAAATAACCAGGGATGCCCTTTCACAGAATTGTATCAGAGAGGCAATGGTTGTCAGGAAATGCTCTTTCGTTCGATATACGACACCTACATTCCGTATGTTATTGACGCGGTCGATGCTGTAGCCCATGCTATTCATCAGTACCTTTTGGAAAATTGCGATCCTTTCAAAGGACACTCGTCTAGCCTTGGAAACCGATGTCGTGATGCTTTGCGTCTCATTGATTTGCAAGCCGTCGAAAGGCACCTGAGAGAAGTCAGCTTTAAAGGACTTACTGGAAATATTAGTTTCGACAGCTTTGGGGATCCCATCTCGTCTTCCTACGACATTGTCCATTTTCAGCGTGGAAATGCCCGTTTGGATGAACGTCATACAGTCAAGCTTGTGATTGGCTCGTGGGAAAAGGGAAGGGAAAAGCCACTCCGATTGGATAACAAGAACATTGTATGGAACACACTGGAAAGTCAGTCATCGATGATCACACCCAAATCGTTTTGCCACGAGGACTGTCCCCCGGGAACTTTCCAATCAAAAACTACACCCTGTTGTTTTGAATGCATCAAATGTCCAGTCGGAACTTTAAGCACAGAGCCAAATAGTTTTAACTGCACAGAGTGTCCTCAAGGACAGTTTCCTGATGAAAGCAGATCAAAGTGCTTCGATCTACCCGAAGTTGAGTTGGCATTGTCTAGCACCACCAGTGTTCTTGTGATTCTATTTGGAACTGTCGGTATGGCTCTGGTCGCCCTGTGTGGTGTCATCTTGTACAAGCATCGAAAAACTCCCATAATAAAGGCAGCAAATCGTGAATTGAGCCTCATATTATTGATAGCGATCTTTTTGTCGTTTATAGTGTCAATTTTAAGTCTTGCCAAACCGACCAACTCGATGTGTGGTTCAAGAATTTTCTTGCGGTCGACATTGTTAACGACTTTTATTTCAATACTGATTCTCAAGACCATCAAGCTTTTAAGTGCATTCAGGATCAACATCGTCGCAGAAGGATTTAAGAAGTTCATTTTAACAGCCAAGAGCCAATCACTGCTTGTGCTGGCACTTCTCTCTTTGCACCTTGTCTTTTTGCTGTTTTGGTTTGCTCTGGACCCACCACGTCAAAAACGAACCACTCAACAAATGGAAGGTACGATACTGCTATCGTGCTTGTTTCACCACTCTCCTATCGGAAAGACATTTCAGATCGCGATCACCTTTTACACGTCGTTCCTTGCAATCGTGTGCACAGTTTATGCCTTCAAAGCGCGGAGTTTGCCCGAAAACTTCAACGAAGCTCGATACATTGCATTCTCAATGTACATTTTGCTCCTATCTGCTGTGGCGTATTATCCTCTTGATATTGGTCTGTCAGCTTCCCACGCGACCAATTTAACGGCGGCAGGAACTCTTTTAAGCTCCTACGGTCTCCTAGGTTGCATGTTTGCTCCTAAGATTTACGTGATTTTTCAAAAGCCTGAACAAAACACTGTTGTTGCTTCTGGGGATGAAATGAATGTTTCGACTTTGTCAAGTTCCAGCTCCGCGCCAGAAACCCATATCAGAGGTTCTGTGGACCCCAAAACTTCATTTGCTTCACAAATAATTAATCAGGAAACGGAGAAAGAAGAAAAACAGCTCAAGGTGTACTTGGTAGCCTTGGGTGTTTCTGCAGTTGTTTTATGCCTTGGCATGGCAATCGCCTTTGTTTGGTTTAAAAGGCGAGCCAGAGCTCAAAGGACGGCTGAGGCGAGTGAAAAGACGGTAGACAATTATAAGACGACAGAAAATGTGTACTTTTCGCCAAACGTTTCTTGCTGGGAAATACCATTCAACTCAATCACTTTTCGGGATATTCTTGGAAGTGGCGCATTTGGTGAAGTTTGGAAAGCAGTGGCCCGTGGTATAAAAGGAATATCTGGTGAAACAGAGGTGGCCGTAAAAAAACTAAAACATAATAGTTCTGACAGAGAGAGGGAGTCATTGATTCAAGAAATTGACCTTTGCAGATCTTTGGAAGGAGAAAGAAATCCCAATATTGTCAACTTTTTGGGCTACGTATCGCGTCCAATGATGCTAATTCTGgagtatgtcccccatggtgacctactcggatgtctgagaaaaagtcgcggaatggacgaccagtattacagctgtccagagaactttcaagacgaaataacgtcatacgaccttctgtcgttcgctcagcagattgcttacgggatgagttTTCTCGCATCTAAAAAGATTCTTCACCGTGATCTTGCAGCTCGAAATATTCTAGTAGGAAGGGGAAAGATATGCAAAATAGCTGACTTCGGACTTGCGCTCATTCGGGACAAATACCAGTACCTCTACTGCACCTATTTGCGAAAGGGCCGCTTGCCAATCAAATGGACAGCCCCCGAACATCTGTTCAATGACTCCATGGAAAATGACACGAGAGTATCGGAAAAGAGTGACGTATGGTCGTACGGGGTTGTCTTATACGAAATCTTTACATTAGGTGGCATGCCCTACCCAGGGTGGAATGAGTGGAAAGTTGTCTTTGAACTGAAGTTGAACAAATATCGTATGCCGCAACCAGAACACGTCAGCGATGACCTATATCAACTAATGTTGGACTGTTGGAACGAGAATCCCATCAACCGACCAACATTTGACCGACTCTATGAAATAACAACAGGAATTCTTCAAGACGAGCACTACCTAGATCTAGATTTGTCCAAATACGACTCAAGCCGTTACATGAATGTGGAAGAAATTGTTGATAGTACTAATTTCCAAAAGCCAACCCCAGAGAATGGTGACATAGCCGACGAGAAAGACGCATTGAAAGATGCAAATGCAGCAATAGAGCAAGTAATAACAAGGCTGTAG

Transcript

amic_s0012.g134.t2

CGTTGACCATTTCTGACCACGGAGCTTGTTATTTAGTTGAATAAAAGGTTCACCAAGCTTTTTCATTTTGGTAATTGGGTCAACTGAGGAACTCAAATTTCAAAACCGTCAAAAAGAAGATGAAACGCGTGCAAGTTATGGTGCAAGCGATTGTCATTTTCATGGCTTCTGGTTTCACAGCGAGTGCTGTACAAGATGCTGACAAGAGCCGCTCCTATAAACCTGGTGACGTAATTCTAGGAGGTCTATTTCTTCTGCACTACTCTACAGACGAGGGTCACTGCGGCGATTTGTTCCCTATTGGCCTAGGTCATGTAGAGGCGATGGTATTTGCTATCAACAAAGTCAACGACAATCCCAAACTGCTACCAAATGTGACCCTTGGATATGACATTCGTGATTACTGTGAAATAATTACAAAGGCAATGAAACACACTTATGATTTCGTGCGACGAAACGAAATGGTTTTACACGCAAACAACGGATCGTGTTACAGTGGGCCGAATTCAAGGCGAGACGAAAGCCGACCGATTGCCGCAGTTATCGGGCCCACGGATTCTGGAAGTGCCATTGTTGTGGGCAGTTTACTGGAGGTAGCGGGAATTCCTGTGATCAGCCATTCGGCGACAAGCAACGAATTAAGCTCGGCACAATACCGCCATTTCTTTCGCACGGCACCACCAGATAATCAACAGGCCCGTGCAATGGCAGACATCATAGAACATTTCAACTGGAGCTACGTCGCTGTGGTTGCCATGGAAGATTCGTATGGTCGAAATGGAGCGAGGAAGGTAGAGACCGAAGCTGAGAAAAGGCAAACCTTTTGCGTTGCTTTTTCTGAATTTATTCCACGGCAAAAATACGGTGCTAAATTGGTAAGGGTTGTTGAAAAGGTCAAACACTTCCCAAACGTCCGAGTTGTCCTCTTGTGGCTTTTTGGTAGCTATGGTCGGCGGTTTCTGAAGGAGGTGGTTAAGCATAAGTTAGGTGACCGTACGTGGATTTTAAGTGATGCCTTAGCAACCGAAGATGATGTCTTTGTGGGTTTAGACGACGAGGAACAAAATGTTGTTCATGGTTCGCTGGGTGTACAGCCTCGACATTTAACACGGGATCAACATTTCGAGAGTTTTGTTATTCACAAATCAAAGAAAAATGAAGTCATTTGGTGGGAAGAACTTTTAAAACAGACAAATAACCAGGGATGCCCTTTCACAGAATTGTATCAGAGAGGCAATGGTTGTCAGGAAATGCTCTTTCGTTCGATATACGACACCTACATTCCGTATGTTATTGACGCGGTCGATGCTGTAGCCCATGCTATTCATCAGTACCTTTTGGAAAATTGCGATCCTTTCAAAGGACACTCGTCTAGCCTTGGAAACCGATGTCGTGATGCTTTGCGTCTCATTGATTTGCAAGCCGTCGAAAGGCACCTGAGAGAAGTCAGCTTTAAAGGACTTACTGGAAATATTAGTTTCGACAGCTTTGGGGATCCCATCTCGTCTTCCTACGACATTGTCCATTTTCAGCGTGGAAATGCCCGTTTGGATGAACGTCATACAGTCAAGCTTGTGATTGGCTCGTGGGAAAAGGGAAGGGAAAAGCCACTCCGATTGGATAACAAGAACATTGTATGGAACACACTGGAAAGTCAGTCATCGATGATCACACCCAAATCGTTTTGCCACGAGGACTGTCCCCCGGGAACTTTCCAATCAAAAACTACACCCTGTTGTTTTGAATGCATCAAATGTCCAGTCGGAACTTTAAGCACAGAGCCAAATAGTTTTAACTGCACAGAGTGTCCTCAAGGACAGTTTCCTGATGAAAGCAGATCAAAGTGCTTCGATCTACCCGAAGTTGAGTTGGCATTGTCTAGCACCACCAGTGTTCTTGTGATTCTATTTGGAACTGTCGGTATGGCTCTGGTCGCCCTGTGTGGTGTCATCTTGTACAAGCATCGAAAAACTCCCATAATAAAGGCAGCAAATCGTGAATTGAGCCTCATATTATTGATAGCGATCTTTTTGTCGTTTATAGTGTCAATTTTAAGTCTTGCCAAACCGACCAACTCGATGTGTGGTTCAAGAATTTTCTTGCGGTCGACATTGTTAACGACTTTTATTTCAATACTGATTCTCAAGACCATCAAGCTTTTAAGTGCATTCAGGATCAACATCGTCGCAGAAGGATTTAAGAAGTTCATTTTAACAGCCAAGAGCCAATCACTGCTTGTGCTGGCACTTCTCTCTTTGCACCTTGTCTTTTTGCTGTTTTGGTTTGCTCTGGACCCACCACGTCAAAAACGAACCACTCAACAAATGGAAGGTACGATACTGCTATCGTGCTTGTTTCACCACTCTCCTATCGGAAAGACATTTCAGATCGCGATCACCTTTTACACGTCGTTCCTTGCAATCGTGTGCACAGTTTATGCCTTCAAAGCGCGGAGTTTGCCCGAAAACTTCAACGAAGCTCGATACATTGCATTCTCAATGTACATTTTGCTCCTATCTGCTGTGGCGTATTATCCTCTTGATATTGGTCTGTCAGCTTCCCACGCGACCAATTTAACGGCGGCAGGAACTCTTTTAAGCTCCTACGGTCTCCTAGGTTGCATGTTTGCTCCTAAGATTTACGTGATTTTTCAAAAGCCTGAACAAAACACTGTTGTTGCTTCTGGGGATGAAATGAATGTTTCGACTTTGTCAAGTTCCAGCTCCGCGCCAGAAACCCATATCAGAGGTTCTGTGGACCCCAAAACTTCATTTGCTTCACAAATAATTAATCAGGAAACGGAGAAAGAAGAAAAACAGCTCAAGGTGTACTTGGTAGCCTTGGGTGTTTCTGCAGTTGTTTTATGCCTTGGCATGGCAATCGCCTTTGTTTGGTTTAAAAGGCGAGCCAGAGCTCAAAGGACGGCTGAGGCGAGTGAAAAGACGGTAGACAATTATAAGACGACAGAAAATGTGTACTTTTCGCCAAACGTTTCTTGCTGGGAAATACCATTCAACTCAATCACTTTTCGGGATATTCTTGGAAGTGGCGCATTTGGTGAAGTTTGGAAAGCAGTGGCCCGTGGTATAAAAGGAATATCTGGTGAAACAGAGGTGGCCGTAAAAAAACTAAAACATAATAGTTCTGACAGAGAGAGGGAGTCATTGATTCAAGAAATTGACCTTTGCAGATCTTTGGAAGGAGAAAGAAATCCCAATATTGTCAACTTTTTGGGCTACGTATCGCGTCCAATGATGCTAATTCTGgagtatgtcccccatggtgacctactcggatgtctgagaaaaagtcgcggaatggacgaccagtattacagctgtccagagaactttcaagacgaaataacgtcatacgaccttctgtcgttcgctcagcagattgcttacgggatgagttTTCTCGCATCTAAAAAGATTCTTCACCGTGATCTTGCAGCTCGAAATATTCTAGTAGGAAGGGGAAAGATATGCAAAATAGCTGACTTCGGACTTGCGCTCATTCGGGACAAATACCAGTACCTCTACTGCACCTATTTGCGAAAGGGCCGCTTGCCAATCAAATGGACAGCCCCCGAACATCTGTTCAATGACTCCATGGAAAATGACACGAGAGTATCGGAAAAGAGTGACGTATGGTCGTACGGGGTTGTCTTATACGAAATCTTTACATTAGGTGGCATGCCCTACCCAGGGTGGAATGAGTGGAAAGTTGTCTTTGAACTGAAGTTGAACAAATATCGTATGCCGCAACCAGAACACGTCAGCGATGACCTATATCAACTAATGTTGGACTGTTGGAACGAGAATCCCATCAACCGACCAACATTTGACCGACTCTATGAAATAACAACAGGAATTCTTCAAGACGAGCACTACCTAGATCTAGATTTGTCCAAATACGACTCAAGCCGTTACATGAATGTGGAAGAAATTGTTGATAGTACTAATTTCCAAAAGCCAACCCCAGAGAATGGTGACATAGCCGACGAGAAAGACGCATTGAAAGATGCAAATGCAGCAATAGAGCAAGTAATAACAAGGCTGTAGAAAACAGTAGGCTGGAAACAATTCGCAACAAAACACGACAGAAGCGGTAACACGAGAGTCGAGGAGATCTTGGAGAAGAGGTTGTGAGACTGCTTCTTAGCGCATGCGCAATGCATGCTATGGAGCCGCTGATTTGAAGAGGGCCTAAACAAGTACTCATTCCAAAACTAATACTTCATTTTTATGATGTAAAATAATAAGCACTTAATGTCTAAAATAAATAAGTGTATAGCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O62714	Extracellular calcium-sensing receptor OS=Sus scrofa OX=9823 GN=CASR PE=2 SV=3
P35384	Extracellular calcium-sensing receptor OS=Bos taurus OX=9913 GN=CASR PE=2 SV=1
P48442	Extracellular calcium-sensing receptor OS=Rattus norvegicus OX=10116 GN=Casr PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000279 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF07562 all species →	NCD3G	Nine Cysteines Domain of family 3 GPCR	Family	Interproscan
PF00003 all species →	7tm_3	7 transmembrane sweet-taste receptor of 3 GCPR	Domain	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011500 all species →	Domain	GPCR, family 3, nine cysteines domain	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR050726 all species →	Family	Metabotropic Glutamate Receptor	Interproscan
IPR038550 all species →	Homologous_superfamily	GPCR, family 3, nine cysteines domain superfamily	Interproscan
IPR000337 all species →	Family	GPCR, family 3	Interproscan
IPR017978 all species →	Domain	GPCR family 3, C-terminal	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24060 all species →	METABOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0001640 all species →	Molecular Function	adenylate cyclase inhibiting G protein-coupled glutamate receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007216 all species →	Biological Process	G protein-coupled glutamate receptor signaling pathway	Interproscan
GO:0051966 all species →	Biological Process	regulation of synaptic transmission, glutamatergic	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0012.g134.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.