Gene detail

Detailed information of amic_s0012.g22.t1 in Acropora microphthalma

Genomic Location: sc0000012_pilon:384717...389655
NR annotation: XP_029205998.2, steroid 17-alpha-hydroxylase/17,20 lyase-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0012.g22.t1

TTAAAAAGAGAGTGTTGCGTGACTCCTGTTTTACTCATTCATTTACATTTCAATGAAGTAATTCTCAAATATATGTACACAAAGGGCTTTTTTTCTATGACGTGAATTTAGAGTGCAATGACCTTGGTTGAAAATAGTCGAAGCAGTACAAAAGTGCGACCTCTCATGTAACAAGGAGCACGGATTGTTACCCTGTGAACAAGTCAGACAAAGCAGAAAAAAAAAGATTGTGTTCGTCACATTGATTCACACCATATAACCAACAGAAGAAACTGCCATGCTATTTATATCTGTACTCTTTGCGATTACTATAATCTGGACCCTGTGGGAGCTGGTGATTCGCTGGTCCCAGCCCCGAAATCTGCCGCCAGGGGAACGTTGGTTTCCGTTCAGGTCGATTAAGTCCCTAAGCGGGGGCACGGTCGCGCCGCACATTGGACTAACAAACATGGCTAAGAAATACGGCGGTGTTTTCAGCATAAGGCGGGGAAGAGAAATAATAATCGTCGTCAGCAACGTATCTGCTGCAAAGGAAGCGCTGAGAAAAAAGGGAAGCGACTTCGCCGGAAGGCCATATTCTTGTGTCTTGGAGTTAATTTCGAAGGAGAGAAATGGAGTCAGCTGCAGTGATAGAAACATTGACCACAGGAACAAGAACGACTTGCTGCACAGGATTACCAAGATGGGATTACATTACATGTCCGAGATAAATTCTTGCTTTCCTTTGGAAGAGAAAGTTCGGAAAGAGGTCGATTCACTAGTGCAACGATTCCAAGAGGCCACGAGGGAACCATTTGATCCAAGCTACAAGATTCACCTTGCAGTGGTGAACTCATTCTGCTCCATTCTTTTCGGAAAGAACTACAAGATAAACGATCCCGAATTCTACGACTTGGTCGACCTCAACAACCGACTGAGGAGGATTTACAACAATTCAGAAACCCTGGATAAATTTCCTTTCCTACAGTACTTTCCAATTGACCTTATGAACGACATACACGAGGTGGTCAGCTTTCGAGACCGATTTTTCAAAAAGAATCTCCAAGAGCACCGGGACACATTTACACCACACAACATCCGAGACTTTGTTAACGCGCTGCTCCACGCCAATACAGTCATCAGTGAGGAGAACTCCCGGATGTTACCGCAGCAGATTATCACTGACGGCGATTTGATCATGACGATGATGGATATTTTTTATGCAGGCGTCGACCCAGTATCCGGGACCTTATCTCGAGCACTGGCGTTTTTGATATACAATCCTGACGTCCAAGCGAAGTTGCATCGAGAATTAGATGACGTCATCGGGAATAACAACATTCCGAGTTTGATTGACAGATCACGCTTGCCATATTTGGAGGCAGTGATAATGGAGACCTTGCGCATTGCTTCACCCAAGCCATTAAGTGTGACACACAGAGCAGTTGTAAACAGCGAAATTAACGGTTTCGCAGTCCCGAAAGATTCTTCCGTCATTTTCAACTGGTGGGCAATGCACCACGACGAGCACCAATGGAAAAATCCAAACGAATTTCGACCGGAGAGATTCCTCAATACAAACGGAAAGTTGATTCCCTTATCCTCTGTGAGCTTCTGGCCTTTCGGAAGCTGCACTCATGGGTGTCTCGGTCAACAGCTAGCAATGGCACAACTGTTTTTGTTCCTCTCACGTCTCATCCACGAGTTTACCTTTAGCATTCCGACGGGGAATGGTCAAAATGGCTTACAAGAAACGTCCTCTGTTATTCAGACCCCAAGACCCTTTCGCATGCTAGTGACTAAAAGATAAGCGACACAGGTGAGACGTTAAAGTCAATTCGGTAGATTTCGTTATACAAGTGTAACTCGAAAAACGAAAACTCCAAACAAGGAATCGAACTTGTGACTTTCTGACGACTTGTGCAGATGTAAAACGTTAGGCTATTGCAGACTAATTAAAATAAAATCCGGGAAAAATTAATTGGGACACGCATGTTATCATCTTCGAGTAATTATTTAATGTCGAATTTTCAATGTGTCGAGTGTCAACGGTTTCGTTTGGATAAACATTGATGCGATGGGGAAGGAAAAGAAGGAGGATGGGGTAGGGGACGAGGGAAGGGAGGGCATGGGGCAAAGGCATGAAATGATCACCAAAGCGAGTCTTTAACAGGATTGTTCAAATATGACCTGCCTAGGATTGTACGTTAGGTGACACATAGTTTCGTTAAACTGCTTGGGGTCAAATTTTTAAATAGTGATGATAAGGACGATGTTTCAAGGCGCGATAACTTTTGTGTGTATTTCACTTACGTAGCTCTTTTTGCTGAACTTTGTTAACTAGTTCTTTCGGTTTTGGTAGCTTTGTCGTGCGCTTTCGTTCATTGGTTTTCTTCGTATTCTTAGGTTCTTTCATACTTCGAAACGCGCTTCACAGAATGAATTCGAAATAATAGACGAGCAAAAGTTGAATTTATGCGACAACACTGTCAGATAAAGCAACAGTGACACTTGCTGTTTCACGCGCGAAATCACAGGGCAACTTGTTTGAGTTACTTTATTTTCGAAAAGGTTTGCGTGAGAGAAAAAATTGCGTCTTTAACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57525	Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana dybowskii OX=71582 GN=CYP17A1 PE=2 SV=1
P30437	Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oncorhynchus mykiss OX=8022 GN=cyp17a1 PE=2 SV=1
O73853	Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalurus punctatus OX=7998 GN=cyp17a1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000171 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24289 all species →	STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0004508 all species →	Molecular Function	steroid 17-alpha-monooxygenase activity	Interproscan
GO:0042446 all species →	Biological Process	hormone biosynthetic process	Interproscan
GO:0042448 all species →	Biological Process	progesterone metabolic process	Interproscan
GO:0047442 all species →	Molecular Function	obsolete 17-alpha-hydroxyprogesterone aldolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0012.g22.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.