Gene detail

Detailed information of amic_s0012.g25.t1 in Acropora microphthalma

Genomic Location: sc0000012_pilon:409049...418785
NR annotation: XP_029205991.1, FHIP family protein v1g243165-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0012.g25.t1

ATGAGTTTGCTAAAGAAACTTGCGTCTTTGTCTCCTCTTCAATCTCCGAATGCCGAAGCGGAAAAAAAGCAACTTGCCGAAGGTCGAGCGGAGTTAGGTAGCGCTGACTACTTACGGCTTGTGGATGTTCATTGGAATAATGCTAAAGCAATAATAGCGTTGGACGAAAAGACTGTCGGGCATCAAGAACGCTGCAATATTTTAGTGCATCATTTAAATGAAATTGTATCGGTTCTGGTGGATGAAAAAGACGGCGATCCGGGACCCTGTTTACAATATGTACTTGATGAGGATGTGTTTCAGAATGTCTATAATTGGAGCGCATCAAATAAAAATTGCGTGAAAGACATGAAGCGTGAACAACTAGTTTTATTTAGGAACCTCATCGAGAAAGCCAGGGCTCATTTATTTATTTACGAACAAGTTTGGAAACCCTTGCTTTACCTCCTGGACTCGTGCGTAAACAAGATCTCTCCCGATATGGAGGAACCTTTCGTTGCAGTGCTGAAAGGTCTTTGCGTGAGCGTCAATCGAGATATTGCTTTGTTAGACTTGTTTTTCTTAGATAATCACCATCACGGTCAAATTGCCAAATTGTCTGTGTTTTCTCTGCTGATTCCCTTCGTCCATCGCGATGGAAACATTGGAAATTGGGCTCGGGATGCCATGCTTTTGTGCATGGCTTTGTCATCTGTTGATACAAGATTGGGAACCTACATCGCTGAAGATACAGACTTCTGTCCGGTCTTGGCTACTGGTCTCAGTGGCCTTTTTTCTGATTTACCCACCTCTCTCGACATCCCATCTGAGGACTGGTATTCCCTGGAAAGAGGATTGTGGGCAACTTTTCCTGAACTGGTATCATTTCTAAGATCTCTTGAGTTCTGCAATAACGTCATACAGATTGCCCATACCCAAGTTCAGACTAAACTGCTGGATCTTATATATCAGGGATTTCTTGTGTCAGTTATGGCATCATCACTAAGCCAGACCTCAGATACAGCATTGATTGCAGCCACTGCGTATCTGGACCTCTTTCTACGCAGCATCACTGATGCCAACCTGATGAAAGTGTTCTTGAAGTTTATTTTGATTGAAAGATCCGATGGGGTTCCAATCCTTGAACTGCTGGTGGCCAGAATTGCTCAGGAATCTCAGCTTGCTGTCATTTCCTTGGGTTTGTTTTACACTCTCTTGGACCTAAATTGTGAAGACATCATGTACAGCTTAGTGTTGAAGTATCTCATTCCATGTACCCACATCCTAAGCAGCCAAAAGCGAACCATCAAGGAGGTGGATTTTTACAGCAAGAGTGCGTCCAAATTTCTGTCTCTCATCCCCGCCTGTTGCGATAGCAGCCGGTCTCCGTCGCCTTCTTCGTCGGCGGAAAACCTCACCGCGAGCCCCAAGACACCAATGACCGTGGACTTGAAATCGAGTGAGCTTGTGTTTTATAGATCAACACAACTCGAAAATCTTTACTCCGAGGTTTGCTCGGATTACCTGGAGTATCTAGCTGATGCACGCAATGCTATTCGCGATTGCCAAATTAGATGCGTTTGTTGGTGCGCGCCGTACGACGGTCAGACTCAGCCTGTCCCTTGCCCTGAGGACTTCGTAGCCATGGTAACGCGTGCTCGCTCAGCCTCGAACTCGTCATCATCTGTTGCCAATGGCAACATCCCAAACCAACGACGAGTCCTGACGTCACTGGATGACACGCATATCCCACAGAAACGATCCAAATCTGCCAATGAAGACGAACAGAAGCCGAGAGTTCCTGACCTGGGGCTGTTTATAACAACGCTCTTTCAGAAAGTGGAACGGATGCCACAGAATTCGTTTTACGTCAACTTGATTTTGACAGGAGTGGTGTCTAGGCTTGCACTCTACCCTCAGCCGCTTCTTCGCTCGTTTCTCCTGAATTACAACATGGTTTTGAAGCCAGGAGTTCGCTCTTTGTTTCAGATCCTGAGTTCTGTTAAAATCAAAGTGGAAAATATAGCAAATCAAACTGAAGGGCTCGACCGTCTTCTTCATCGCGCCAGAAAAAACTTGATTCTTCGCGAAGAAAAAAGCCGTGCGAGCATTCAAAGCGTGGTCATTGACGTACAGCAACCAGTGAAGGTGGCGAAAAACGCGGAATCACGAAGCCCAACAGCGACTCGCAAGCTGCTGCAAAGACAAAGAACAGATTCCTCGTTGTTAAGTCGCGCGCGATTTTTTCAAGATGGACCTCCACCCAAGAGTTTCGGCAGTAAATTTAGTCTGGTGAAACAATCACTTGCGGATCAGGCTTCTGGGAATCCGCAATCAGGGATGGGAACATTCAAAAGACGTGGAAGCGAGAGCACTAGCTCCAGTCTTTCACTAAGCGATTCCTGGGAGAGTTTAGCCTCGCTGAGCCCACAGTCTGGGAGCGTTGCGGATTTAAGCGCGGAAGACTTTCCTAGGCCGGGAACTGTGCGCAAGTTTTCCGTTCCTGCGAAACTTGGGCAGAGTTCACCGAAAAATTCATTTGTCAAAAACTCTTTTCGGCGGAAAAACCCGAAAACCGTCAAAAACGCTGTGTATTGCATTGTTGTATTGGAGGAGTGGCTGAAAGAACTGGCTGCTATCTCACAGGAGCATGCTTTGTTGCTTGTCACTGGGGAAGAATGTCAGGTTCCGGGATGA

Transcript

amic_s0012.g25.t1

TTGTATTCAAGATGGTGGTGGTTGAGCTTAACGTGAGTCAAGGTTTTCTGCCTAAAGGCGAATATTTCTAGAGGCCTATGGAGGATTTAAGCCCGGTTTTGAACGATGAGTTTGCTAAAGAAACTTGCGTCTTTGTCTCCTCTTCAATCTCCGAATGCCGAAGCGGAAAAAAAGCAACTTGCCGAAGGTCGAGCGGAGTTAGGTAGCGCTGACTACTTACGGCTTGTGGATGTTCATTGGAATAATGCTAAAGCAATAATAGCGTTGGACGAAAAGACTGTCGGGCATCAAGAACGCTGCAATATTTTAGTGCATCATTTAAATGAAATTGTATCGGTTCTGGTGGATGAAAAAGACGGCGATCCGGGACCCTGTTTACAATATGTACTTGATGAGGATGTGTTTCAGAATGTCTATAATTGGAGCGCATCAAATAAAAATTGCGTGAAAGACATGAAGCGTGAACAACTAGTTTTATTTAGGAACCTCATCGAGAAAGCCAGGGCTCATTTATTTATTTACGAACAAGTTTGGAAACCCTTGCTTTACCTCCTGGACTCGTGCGTAAACAAGATCTCTCCCGATATGGAGGAACCTTTCGTTGCAGTGCTGAAAGGTCTTTGCGTGAGCGTCAATCGAGATATTGCTTTGTTAGACTTGTTTTTCTTAGATAATCACCATCACGGTCAAATTGCCAAATTGTCTGTGTTTTCTCTGCTGATTCCCTTCGTCCATCGCGATGGAAACATTGGAAATTGGGCTCGGGATGCCATGCTTTTGTGCATGGCTTTGTCATCTGTTGATACAAGATTGGGAACCTACATCGCTGAAGATACAGACTTCTGTCCGGTCTTGGCTACTGGTCTCAGTGGCCTTTTTTCTGATTTACCCACCTCTCTCGACATCCCATCTGAGGACTGGTATTCCCTGGAAAGAGGATTGTGGGCAACTTTTCCTGAACTGGTATCATTTCTAAGATCTCTTGAGTTCTGCAATAACGTCATACAGATTGCCCATACCCAAGTTCAGACTAAACTGCTGGATCTTATATATCAGGGATTTCTTGTGTCAGTTATGGCATCATCACTAAGCCAGACCTCAGATACAGCATTGATTGCAGCCACTGCGTATCTGGACCTCTTTCTACGCAGCATCACTGATGCCAACCTGATGAAAGTGTTCTTGAAGTTTATTTTGATTGAAAGATCCGATGGGGTTCCAATCCTTGAACTGCTGGTGGCCAGAATTGCTCAGGAATCTCAGCTTGCTGTCATTTCCTTGGGTTTGTTTTACACTCTCTTGGACCTAAATTGTGAAGACATCATGTACAGCTTAGTGTTGAAGTATCTCATTCCATGTACCCACATCCTAAGCAGCCAAAAGCGAACCATCAAGGAGGTGGATTTTTACAGCAAGAGTGCGTCCAAATTTCTGTCTCTCATCCCCGCCTGTTGCGATAGCAGCCGGTCTCCGTCGCCTTCTTCGTCGGCGGAAAACCTCACCGCGAGCCCCAAGACACCAATGACCGTGGACTTGAAATCGAGTGAGCTTGTGTTTTATAGATCAACACAACTCGAAAATCTTTACTCCGAGGTTTGCTCGGATTACCTGGAGTATCTAGCTGATGCACGCAATGCTATTCGCGATTGCCAAATTAGATGCGTTTGTTGGTGCGCGCCGTACGACGGTCAGACTCAGCCTGTCCCTTGCCCTGAGGACTTCGTAGCCATGGTAACGCGTGCTCGCTCAGCCTCGAACTCGTCATCATCTGTTGCCAATGGCAACATCCCAAACCAACGACGAGTCCTGACGTCACTGGATGACACGCATATCCCACAGAAACGATCCAAATCTGCCAATGAAGACGAACAGAAGCCGAGAGTTCCTGACCTGGGGCTGTTTATAACAACGCTCTTTCAGAAAGTGGAACGGATGCCACAGAATTCGTTTTACGTCAACTTGATTTTGACAGGAGTGGTGTCTAGGCTTGCACTCTACCCTCAGCCGCTTCTTCGCTCGTTTCTCCTGAATTACAACATGGTTTTGAAGCCAGGAGTTCGCTCTTTGTTTCAGATCCTGAGTTCTGTTAAAATCAAAGTGGAAAATATAGCAAATCAAACTGAAGGGCTCGACCGTCTTCTTCATCGCGCCAGAAAAAACTTGATTCTTCGCGAAGAAAAAAGCCGTGCGAGCATTCAAAGCGTGGTCATTGACGTACAGCAACCAGTGAAGGTGGCGAAAAACGCGGAATCACGAAGCCCAACAGCGACTCGCAAGCTGCTGCAAAGACAAAGAACAGATTCCTCGTTGTTAAGTCGCGCGCGATTTTTTCAAGATGGACCTCCACCCAAGAGTTTCGGCAGTAAATTTAGTCTGGTGAAACAATCACTTGCGGATCAGGCTTCTGGGAATCCGCAATCAGGGATGGGAACATTCAAAAGACGTGGAAGCGAGAGCACTAGCTCCAGTCTTTCACTAAGCGATTCCTGGGAGAGTTTAGCCTCGCTGAGCCCACAGTCTGGGAGCGTTGCGGATTTAAGCGCGGAAGACTTTCCTAGGCCGGGAACTGTGCGCAAGTTTTCCGTTCCTGCGAAACTTGGGCAGAGTTCACCGAAAAATTCATTTGTCAAAAACTCTTTTCGGCGGAAAAACCCGAAAACCGTCAAAAACGCTGTGTATTGCATTGTTGTATTGGAGGAGTGGCTGAAAGAACTGGCTGCTATCTCACAGGAGCATGCTTTGTTGCTTGTCACTGGGGAAGAATGTCAGGTTCCGGGATGAATGTAACCGTGGGAAGTGACTAACAACCCGAGGGATGTGCCAATAGTGGATGGTATCCTCAAGTGTGTTCGTCGTATTATCCGCAGATAATCATGATTCGATCTTTTTCGAAGCCACCAAATACGCCATATTATGTAACGATTTATAGGAATATTCTTGCTCAAAATCCAAGACGAAATGCAAGATTTACTAAGGTATCCGATTCCCCATCATTTCCAATGATGTGTTTTGAAAATAGGGCAGTTTCTGttcacgaagcaaccaggtaggcagcaaagaaagtttgaagttactctggtttaaaatgaatgcaaagttactattcaagaccGTGGGTAGTGTTCTTCTTCCCTGACCTTGCAGATCTTCTTCTTCGTTGACCCTACGGGGTCTTCCTCTTTTTCCTAGAACCCAGAAcctggtgatctggtgacgtaatttggaggactgggaagaaaaattttaacgccgtatcccacaaccgcgcgcggccttaggtgttgtttccaaactccctgcagcattttcatggccaaaaatcaacagatcattccatgtctaccacatttcctgttactgaatgaacattcaagtagactcgacgagctctaacctcgcctctgccatgttgaattcgaaaataaggccgcacgcggttgtgggatacggcgttaaaatttttcatcccagtcctccgaattacgtcaccagatcacctagAAAgtcttgaaccgcaactgtttaagctgcctccattttaagccatagttgcgtcaaactGTTTAGGCGAGTTTATTTTTTACTTTGTGTCCTCGTTAGCATAAGCTAAGCTTGTTGCTTTCTAGTTAATCAATCACAAAATTAGCACTCAATTTTGAAACTGCAACGCTTGGCAGAAAATTAAATTTGAACACAATCAGGCAGGATTGTTAGGGAATGAACCTTTAACAAGTGATAAGTTTACAAAGAATCCTTGGGCTTATAATATTTTTGCCTGCTAAAAAGTAATAAGGGTTTGTTTTTTTACAAACATTTTCGCTCATTATCAAAGTCAAAAGTCGTTAAGTTTGAGAGATTTCTAAGTTAAACAAGTTTGTGTAACTTTCGAATTTGTTAATAGCATGGTACCTTTTGCTTGCAATTCTATACAAATGAGACAAAATTAAATGATGACGTAACAGAAGCTGACCTTTATCTCACCCCTCGTTTCCAGGGTCGAACGTGGGGATCATGGATATGAGTTATTATAACGAGCGCATCCACCTTTCTTGGGCCTTTCATTTCCCCAACCCAGCTACCGAAGGAAGCGCTCCGCTCAGGGGTGGGGAAATTAATAGCCCGGGAACGAAGTTGTGTAACGAATCATTTGAAAATTGAATGCCTCAGAGAGAACATTTTATTGCACATTTTAAGACTGTGATTTGTCAAATTCTGATCGGGAGAATAATTTTGAAAGGAGCTCCTGGTAAGGAACACGTTTTATCCAGACAATGAAAAAAATAATCTTGGTCATAAGAAACTCTTGTCGGTTTCTATAATTTTTTTATCGTTTTTCTGCGGTCACGAGAGTGAGTTTCTAACTGCTGTGACAAGTTTTTGTTACAACAGAACAAGGACTGTATCTGAAACGTTTCATAAACCAACTAAATTAATGGATCCAACGTATTTATGTAGGTATGCACTCTCAAAAACGTGTTCTGCAGAGACTTAAATTTTACTATCGCGTCTACGAAATTTTAAAACAAAACTAGAACTTTGTTCCCATTATACTTATTATTTTAATCTAATTATTCATTTATAAGCAGAAGTATTCAGAGATAAGCATTATTTTGTAACAGTACGAGTTGAATAAAACTTTATTCATCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S6A1	FHIP family protein v1g243165 OS=Nematostella vectensis OX=45351 GN=v1g243165 PE=3 SV=1
Q66H54	FHF complex subunit HOOK-interacting protein 1B OS=Rattus norvegicus OX=10116 GN=Fhip1b PE=1 SV=1
Q8N612	FHF complex subunit HOOK-interacting protein 1B OS=Homo sapiens OX=9606 GN=FHIP1B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007328 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10257 all species →	RAI16-like	Retinoic acid induced 16-like protein	Repeat	Interproscan
PF19314 all species →	DUF5917	Family of unknown function (DUF5917)	Family	Interproscan
PF19311 all species →	KELAA	KELAA motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019384 all species →	Family	FHF complex subunit HOOK interacting protein	Interproscan
IPR045669 all species →	Domain	FHF complex subunit HOOK-interacting protein, C-terminal	Interproscan
IPR045668 all species →	Conserved_site	FHF complex subunit HOOK-interacting protein, KELAA motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21705 all species →	RAI16 PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for amic_s0012.g25.t1 in Acropora microphthalma.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26420	FHIP1, FAM160A; FHF complex subunit HOOK interacting protein 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.