Gene detail

Detailed information of amic_s0012.g30.t1 in Acropora microphthalma

Genomic Location: sc0000012_pilon:474621...487386
NR annotation: XP_029195170.2, H(+)/Cl(-) exchange transporter 5-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0012.g30.t1

ATGGATCGCAACCGTTTGCCATCAGATGTTTCTGAAAGTTCATATTCGCCACAAAGAATTGACAATATTCTGGGGAGCACGGATGACGAAGACCAACCTATAGTCGAGGGAAGTAATTTGCGCTTTCTCCAACAGTTTTCCCGAAATGGTAGTTCCCGAAACGACATATTTCTTGATGAACCTGAAGCTGCAGCTCTCGCTCAATACGAAGACTTCAATACCATCGACTGGGTGCGTGATCGACAGCGAGAGAGGAAGAGGTTTCGCGACATGCGTCGCATGAGGAGGGGTAGCCTTTGGCAAAGAATAAAGCAAGCAAATGATGCTTGGGCCGGCTGGCTTATCGTTTTCCTGGTTGGCCTTTCAGCAGGCTTATGTGCAGGTATTATAGACATTGGAGCTAGCTGGATGACTGATTTGAAACTTGGCGTTTGTCCTGAAAACCTCTGGTTTAATCGTGAGACATGTTGCTGGTCAGACAACACGACTTTTGAAGAGGTGGGCTGTCACCAGTGGAAAACATGGGCCCAAGTTTTTACTGGGACAAATGACGGTGCCTTGGCTTATGTCATTAACTATAGTTTGTACGTTGCTGTGGCTTTTTTCTTTGGTTTACTTGCTGTTACTCTGGTGCGCTGGTTTGCTCCTTATGCTTGTGGGAGTGGAATTCCCGAGATTAAGACTATCCTAAGTGGCTTTATTATTCGTGGTTACTTGGGTCGCTGGACCTTGATAATCAAATCAGTGTCCATGATGCTTGCAGTGTCAGCTGGCTTAAGCTTGGGGAAAGAAGGTCCTCTTGTCCATGTGGCAAGTTGCTGTGGCAACTTTTTCTCTTATGTGTTTGCCAAGTTTAGCAAGAATGAAGCCAAGAAAAGAGAGGTTCTGTCTGCTGCTGCAGCAGCTGGGGTATCTGTGGCATTTGGCGCTCCTATTGGTGGTGTCCTGTTCAGCTTGGAAGAAGTCAGCTATTACTTTCCAATGAAGACACTTTGGAGGTCATTCTTCAGTGCAATGATAGCTGCTTTTACGCTAAAATACATGAATCCGTTTGGAACTGGTCATTTGGTTATGTTCTACGTGGAATATACTTCTCCATGGAAGCTTTTTGAATTGGTCCCCTTTATATTCTTAGGAGCTCTTGGGGGTCTCCTTGGTGCTATGTTTATCAAAGCAAACCTTTGGTATTGTAAAATAAGGAAAACTACGAAACTTGGACACTATCCTATACTAGAGGTTTTATTGGTAACTCTTGTGACTGCCATGATCGCCTATCCTAATCCATATACCAGGGAGAGTACAAGTGTTCTTATTAGACGCCTTTTCTCTCAATGTGGTCCAGCTGACAACTCAGCACTTTGTGACTATGCGTTTGTAAACTCTACTTTGAACGTGAACGATCCTAACTGGCCAGTATCAAATGCAGGGTCTGGAGTTAAAAGAGCATTGTGGCAGCTTATCCTTGCCATGATTTTCAAGGCAATTATCACTGTCTTTACCTTTGGAATAAAGGTACCAGCTGGATTGTTCATTCCTAGTATGGCTGTCGGTGCTTGTATGGGGAGAGTTCTTGGTATCGGAATGGAACAACTTGCTTATCACAATCCAGACTGGCCCATATTTGAATCATCGTGCGGTAAATCGATTGCAACATGCATTACGCCTGGACTGTATGCAATGGTTGGAGCGGCAGCAGTGCTTGGTGGAGTCACAAAAATGACAGTCTCTCTTGTTGTGATCATGTTTGAACTTACTGGTGGACTGATGTACATCGTTCCTTTGATGGTTGCCATAATGACAAGCAAATGGATTGGTGACGCCTTTGTCAGCGAAGGAATCTATGACGGTCATATTCACTTGAATGGTTACCCATTCTTAGACAGCAAGGAGGAATTCACGCATACGACACTGGCTGCCGATGTCATGAGGCCAAGGAAAAACGATCCTCCTTTGTCCTGTATTACTCAAGACAGCTTTACTGTTGGGGACGTTGAGCAACTGCTGGAAGAAACTGTGTTCCAGGGATTTCCGGTGATTGTGGATAATGAATCACAGAGACTGGTCGGATTTGTCCTCCGGAGGGATCTCAACATTGCGATCAGTCACGCCCGAGCACGTGATTCAGAGGTCGTCTCTGCATCGCAAGTGTATTTCATGCCCAATCCTCCGCGGTACCTGCCCCCTGGTCAACCGTCTTCCTTGAGTCTGAGGCACATTGTTGACATGAGCCCTGTGCATATTACCGATGCAATGCCCATGGAAACTGTGGTCGAGATGTTCCGGAAACTGGGACTGAGACAGACGCTGGTCACGCACAATGGCCGCTTGTTAGGAATTATCACCAAGAAGGACGTGCTTCGTCATATTGCACAACTTGCCAACCAAGATCCCGACTCCATACTCTTCCATTAG

Transcript

amic_s0012.g30.t1

AACTTCTGTAAAGTTTTTTTTTAGTTCTTAGAATACAATGATACCTTAAAACGCCACAAAATGGATCGCAACCGTTTGCCATCAGATGTTTCTGAAAGTTCATATTCGCCACAAAGAATTGACAATATTCTGGGGAGCACGGATGACGAAGACCAACCTATAGTCGAGGGAAGTAATTTGCGCTTTCTCCAACAGTTTTCCCGAAATGGTAGTTCCCGAAACGACATATTTCTTGATGAACCTGAAGCTGCAGCTCTCGCTCAATACGAAGACTTCAATACCATCGACTGGGTGCGTGATCGACAGCGAGAGAGGAAGAGGTTTCGCGACATGCGTCGCATGAGGAGGGGTAGCCTTTGGCAAAGAATAAAGCAAGCAAATGATGCTTGGGCCGGCTGGCTTATCGTTTTCCTGGTTGGCCTTTCAGCAGGCTTATGTGCAGGTATTATAGACATTGGAGCTAGCTGGATGACTGATTTGAAACTTGGCGTTTGTCCTGAAAACCTCTGGTTTAATCGTGAGACATGTTGCTGGTCAGACAACACGACTTTTGAAGAGGTGGGCTGTCACCAGTGGAAAACATGGGCCCAAGTTTTTACTGGGACAAATGACGGTGCCTTGGCTTATGTCATTAACTATAGTTTGTACGTTGCTGTGGCTTTTTTCTTTGGTTTACTTGCTGTTACTCTGGTGCGCTGGTTTGCTCCTTATGCTTGTGGGAGTGGAATTCCCGAGATTAAGACTATCCTAAGTGGCTTTATTATTCGTGGTTACTTGGGTCGCTGGACCTTGATAATCAAATCAGTGTCCATGATGCTTGCAGTGTCAGCTGGCTTAAGCTTGGGGAAAGAAGGTCCTCTTGTCCATGTGGCAAGTTGCTGTGGCAACTTTTTCTCTTATGTGTTTGCCAAGTTTAGCAAGAATGAAGCCAAGAAAAGAGAGGTTCTGTCTGCTGCTGCAGCAGCTGGGGTATCTGTGGCATTTGGCGCTCCTATTGGTGGTGTCCTGTTCAGCTTGGAAGAAGTCAGCTATTACTTTCCAATGAAGACACTTTGGAGGTCATTCTTCAGTGCAATGATAGCTGCTTTTACGCTAAAATACATGAATCCGTTTGGAACTGGTCATTTGGTTATGTTCTACGTGGAATATACTTCTCCATGGAAGCTTTTTGAATTGGTCCCCTTTATATTCTTAGGAGCTCTTGGGGGTCTCCTTGGTGCTATGTTTATCAAAGCAAACCTTTGGTATTGTAAAATAAGGAAAACTACGAAACTTGGACACTATCCTATACTAGAGGTTTTATTGGTAACTCTTGTGACTGCCATGATCGCCTATCCTAATCCATATACCAGGGAGAGTACAAGTGTTCTTATTAGACGCCTTTTCTCTCAATGTGGTCCAGCTGACAACTCAGCACTTTGTGACTATGCGTTTGTAAACTCTACTTTGAACGTGAACGATCCTAACTGGCCAGTATCAAATGCAGGGTCTGGAGTTAAAAGAGCATTGTGGCAGCTTATCCTTGCCATGATTTTCAAGGCAATTATCACTGTCTTTACCTTTGGAATAAAGGTACCAGCTGGATTGTTCATTCCTAGTATGGCTGTCGGTGCTTGTATGGGGAGAGTTCTTGGTATCGGAATGGAACAACTTGCTTATCACAATCCAGACTGGCCCATATTTGAATCATCGTGCGGTAAATCGATTGCAACATGCATTACGCCTGGACTGTATGCAATGGTTGGAGCGGCAGCAGTGCTTGGTGGAGTCACAAAAATGACAGTCTCTCTTGTTGTGATCATGTTTGAACTTACTGGTGGACTGATGTACATCGTTCCTTTGATGGTTGCCATAATGACAAGCAAATGGATTGGTGACGCCTTTGTCAGCGAAGGAATCTATGACGGTCATATTCACTTGAATGGTTACCCATTCTTAGACAGCAAGGAGGAATTCACGCATACGACACTGGCTGCCGATGTCATGAGGCCAAGGAAAAACGATCCTCCTTTGTCCTGTATTACTCAAGACAGCTTTACTGTTGGGGACGTTGAGCAACTGCTGGAAGAAACTGTGTTCCAGGGATTTCCGGTGATTGTGGATAATGAATCACAGAGACTGGTCGGATTTGTCCTCCGGAGGGATCTCAACATTGCGATCAGTCACGCCCGAGCACGTGATTCAGAGGTCGTCTCTGCATCGCAAGTGTATTTCATGCCCAATCCTCCGCGGTACCTGCCCCCTGGTCAACCGTCTTCCTTGAGTCTGAGGCACATTGTTGACATGAGCCCTGTGCATATTACCGATGCAATGCCCATGGAAACTGTGGTCGAGATGTTCCGGAAACTGGGACTGAGACAGACGCTGGTCACGCACAATGGCCGCTTGTTAGGAATTATCACCAAGAAGGACGTGCTTCGTCATATTGCACAACTTGCCAACCAAGATCCCGACTCCATACTCTTCCATTAGTTATTAAATCACCGAAATCACGAGATCAATGTATGAAGGTAAATAATACTTCAGTCAAATGTAAAAAAAATTAATAAGCCGTAGTGTGGTTTTCAGCGGGAACACCCTCGGGAAGGGGTGCCTGACTCCAAATTATTTGAAGCGCTCAAGTTCTGTATATTCGTGTCACGGTGCATTCAGAGACCGAGCTATTTTTAGTAGTAAAAGTAACGGCAttactcctttctatttatgttaattagatctactagtctcacctaagttaaaatattcttctgaattttgtcgatggttgcgaggttagaaaggctcataatagtttaaactaaagaatattaaatttgattgccattgtgaaagaagactaAACTGAACTAAAGTAGCGTCAAGAAGAAAACATACTTATAATGAGACATAATTAGTCCTAAGGTGTTTTATTTAAGAAATATAAATACAGTCGCACAGTATTTTTTACCGAATATAATGCGAACTCGCAATAGATTATCTCCAGTTGGTAAACCAGTTTTCTGCGCAGTCGCTCGGTCATGAATTTGATTTAGGATTTTATTTTTCTAAGCTTTTAGCTACTTGATATGCTCTGATACGAGGGTTGTCCatagacgttattcataaagggctgccagttcattattcttttgtccttgagcaaattagcctaccaagcctcgttgtcatgtgccaaattgaaaagaatccttgctctaatttgaagtttggtagcttaatttgcacaataacagaacaaaaataaaacagctgccatttatgaatTTACGTGTTTTCAACACGTAATGTTAAAACATTCACGTTACATCGTGTAGGCATCATTAAGTGTCTTCCTAAGCTTAACTAGGGCTACTTATATTCCTTACGCGGGTGCTACATATTAGTACATTTCTTCGCCGTTCTCCAACTGACAAGAACGTGAAATGACCAAATTTGAGGTTGTGTGGAGCATCTTAATTTACTTCATTTCCTCCCTTACCTTCCACGTTGTTCGCATGTGTGCTGCACAATTAACATCTCAAAAACGAAAACTTGTAATGAAACGGTTAATGGTTGGATTAAGTTTAACTTTAAGATCGCGTCGACCTCTTTGATGCATCTGTAGGTTGTCGAGTCATTACTTATCATTTATCTTTTATCATCTCGCTTTTACTGAATTCGAATCATGGACAAGGAAAACAAAAACGATAATTTATTTGATATGTAAGGATTACGGATATCTATGAACGAGATGGGGAGAATCATGCTTGTCAAAATCTCTCCTTAAATTTGAGTTTACCTCAAAGAGAACAGAGGCTGAAATGGTTTTTGGTGGAGTACAATAGACTATCTCACCGATGAGAGGTTCCAAGGGAATCCAAGGTAGTTCCACTCTATTTTAAGGGTTACGCACTAAAAGTTGCCTGTGTAGCACTGAATAGAATGACTTAAGTAGCTTTTAAGGGTAAGTTGCATTGCTGAGAAGTTCCCAAGTTATCCCATCTGAGCGTTTGCCGTAGGTTTTTTTTTTTTTCGCCGTAGGGTTAACTTGGGAATTTCTCAGCACTGCAACTTACCTTAAAATTACTTGGATCACTCTATTTTAGGCTACGTTGATCAAAATTGTAATCGAAATTTTACTTTAAAAATAAAGCGAATTATTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51790	H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens OX=9606 GN=CLCN3 PE=1 SV=2
O18894	H(+)/Cl(-) exchange transporter 3 OS=Oryctolagus cuniculus OX=9986 GN=CLCN3 PE=2 SV=3
P51792	H(+)/Cl(-) exchange transporter 3 OS=Rattus norvegicus OX=10116 GN=Clcn3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003874 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00571 all species →	CBS	CBS domain	Domain	Interproscan
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45711 all species →	CHLORIDE CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015299 all species →	Molecular Function	obsolete solute:proton antiporter activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05012	CLCN3_4_5; chloride channel 3/4/5	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.