Gene detail

Detailed information of amic_s0012.g53.t1 in Acropora microphthalma

Genomic Location: sc0000012_pilon:818711...828076
NR annotation: XP_015774766.1, PREDICTED: microphthalmia-associated transcription factor-like isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0012.g53.t1

GTTAAGTGTTGCAAAGCAACACGAAAGACTGGCCTTTAAGGATGATACTCGCAGAAGTGAAGAAAGCATAGTGTTTCTTGTTGCCTTCGGTGGCGAAACCTTGGCTTTCTCTACTCGTTTCAATTAAGGCATTCAAATGAGTGAATCTGGAGTGGATCTCGACTTTGATCTTCTTAGTCCAGACGGCTACGAATCGCAAGAAGAGACAGAAATCTTCTACACGTTGCAGTCAAGATCCTTGGATCGACGGAGTGCAGACCCACCGTTGATTTGCCCGCCTGTAGAACGCAGAGAGCCCATCAAAACAATGTCAACTCCTATCACAAGGACCAATTTTAAGcagcaacttcaacggcaacagctccagcagcaAGAGTTGCAGTCGTACCAAACTCAGAAACAAGGCACAAATGAGGTGCTGCAGTCTCAAGGCATTGCTGTTCCCAGAACTTCATCTCCTACCACCGTTCCCCCGGACGTCCCATCAAGTGTTCTTCAGGTGAAGACACAACTTGAAAATCCCACCCGCTACTTCATTGCACAAAAACAGAAAAGGCAACTGAAGGAGTATCTTAAAACACAAGGATCCCCTACTGCAAGTGACTTAGCAGCAGTGGTTAGCAGTGCTAGTCAACCCACATTAAATGCTATCAATCAACAAGCGGTTGCGGCCTTGGCATCCGGTCATCTGATGAGGCAACCCGAGAGCCCCATGGCAGTCATGAGTCCCGAAGGGAATAACGCCTCAGAGGTGGATAATTTACTAGACGATATAATCAGCCTTGAGTCAAATACAGTAGATGACGGTCTTCCCTGGGATGCTTCTTTAAGTCTTGGCTCGGTTCCACCTGTTACCAATAACAACATGTTTGATATTTACAATGGCGCTCTTGGTATGGCACCCTTGCAGCTCCATGCACCTCCACCTTCATCAAGTTGCCCTGCTGTCATAAAACAAGAACCACAAGAATTATTGATGGACCCGCAATTTGCCAAAGACAGACAGAAGAAAGATAACCATAATATGATTGAAAGACGAAGAAGATTTAACATTAATGACAGAATAAAGGAATTGGGAACACTCCTTCCACGCCAAGATTCAGACGTGCGCCAAAACAAGGGAACAATATTAAAGGCATCGGTAGATTACATTAGAAAGTTGAAGCGAGAGCAAGAGCGCATCAGGCAACTCGAGGAGGACAAAAGAAGCACAGAGGATCTTAATCGAAAACTTTTACTACGAGTTCAGGAGCTTGAAATGCATGCTCGCGCACACGGAATCCCAACAACACCTTTGACATCAGACACAAGCACAGCACTGTTGTCAACGATTCTCTCAGCGAAACAAGCGGCGAACGACCACGTTAAAGTCAAACAGGAGCTTGCACAAAGCAGTAGGTGTGCAGCAGCGAAAGGCAGCCAAGAAAGTCAGGAGCCTATGGAGGACTATTCACTACCGTCATCAAGTAATCCCAGTCCACGCTCCAACATGGACGATGAGATGACCGATTAAGTAGAAATTGCTGTTTTCAAATCTCGGCATATATCTCTCGTTGAGGATCCTAGGGCACGATATTGAGTTGGCTCCAGGTATTGGACCTGCTTGTGAATCTTGACAGAGCGCTAAAGGACACATGCTTTTGGGTGCTGGATTTTATTGAGCTAAGGAAAAAAAAAAAGAGCGCACTACATTTAACAAGGTTGAAAGTGTTGTTTGTGGGACACAAGATTTTGCTTCCTCATGGTGCTTACGAGACGAACATTCTAAGCGATAAACGCTTCGACGCAAAGCAGTGTGAAAATGGCGGGTTATGTTGACGTATTTATGGGTATTAAACTCCTGTTCCTCGTTGTGGTATTCTCTTCATGTGACTAATGATCTGCTCTTCATGTCGCACTCGGCAAGGAAGGTCATTTTCCCCTTCAAAATGGACATTGTTTTTATCCAAGGCAGTAAAGCCGCTCGCGACAATGGGTGTGTGCGTACGTAAACGCGTTCAACTGATCATGACATCGTTAATGACGTCGTTGTGGCACGTGACATTTACGTTCCTTACGCCGTACATGCAGCACGATTTCTTCCCCTCCAATTTATTTTCATTTCGCTTGGAAAAGCAAAATCTCCGAAATACGTTTCTTATTTCAAGGCAAGTCGTCCGAAAATAATGAAACTTTTTCAGGAGTTTGAAAAATCGTAGGGGGAAAATTAGGAAATTTTACAAGTGAACCGATGGCAGTTTTGTATTTAAAGAAAGCAAGATAATTTAACATTGGTGAATTTTTTAAAGACGCGCTCAAGGCTTGTTCTTACCAAATGGGGCTTCAAAAACGATTCAGCTGTTTTATAGCTGAGAGTCCAAAATTAAATTTATAAAATAGGTATTTTAAGAAACATTTGTATTTTCATTGGAAATCAAACCAGGACAATAGAAATCGACTCTTAGTTCATGTGTGACGCGAGCCTAATCTTATTTACGCATCGTGATTTTAGGTAATGTCAATAAACAATTTGAATATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08874	Microphthalmia-associated transcription factor OS=Mus musculus OX=10090 GN=Mitf PE=1 SV=4
O88368	Microphthalmia-associated transcription factor OS=Rattus norvegicus OX=10116 GN=Mitf PE=2 SV=2
O75030	Microphthalmia-associated transcription factor OS=Homo sapiens OX=9606 GN=MITF PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005210 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15951 all species →	MITF_TFEB_C_3_N	MITF/TFEB/TFEC/TFE3 N-terminus	Family	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031867 all species →	Domain	MiT/TFE transcription factors, N-terminal	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45776 all species →	MIP04163P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09455	MITF; microphthalmia-associated transcription factor	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.