Gene detail

Detailed information of amic_s0012.g84.t1 in Acropora microphthalma

Genomic Location: sc0000012_pilon:1260764...1279208
NR annotation: XP_029206762.2, LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0012.g84.t1

ATGAATAAAAGGCCATTATTTCTCGGCAAAGGTCGCGGAAGAGGTCGCGGCAACGAACAGCAAAATGCCAAACCTTCTGCGTCTTGGAATCGGCGTAACACCCGTGGAAATGCAGGAGTTCTCCCTTCGGTTGTTAAAGGAGATCACGGTCCGGCGATCAACAGCGAAAAATCCCCTGGAGTCGATGAAGTTTCTCGGGAGAGAATGGCAAAGGCGGAAAAAATAAAGGAGTCTGCCAAACGATTCATGGAGAAGGCAGAGGATGACTTAGTAGAATCCTCTGAGGACGAGGAAGTGAACGACGATGAAATATTATCTAACACGTTGAAAAACTATAGAAATTCCTCGAAAGATAATGAAACAGACCTTGAGAGAGCTGCACAATATCTGCTGGACTCATGCAAGCCTGGAGCCAATGTGTGTTTGATTTGCATTGCTTCAATTAAGCATGTGGATGCTGTGTGGAGCTGCAGCCAGTGCTATACTGTTCTTCATCTTCTGTGCATTCAGAAGTGGGCACGAGATGGTGCTGCCCTTGCTCAACTATCCTCACAAGAAGATTTGTCTCCAGCTGATCTTCCGTGGTTCTGTCCCAAGTGCAGATTTGGGTTTAAGCAGTCCGATTGTCCCACAAGATACTACTGCTACTGTGAAAAACAGGAAAATCCTTCATTTGACCCCTGGCTCACCCCCCATTCCTGCGGGCAATCCTGTAGTAAGCCTCTCAAACCTGACTGCGGTCACGATTGTCTTCTCCTTTGTCATCCAGGTCCCTGCCCTCCTTGTCCAAAAACTGTCCGTGTGTCATGTCATTGTGGCTCTGCAGCTCCCATAGTTCGGCGTTGCAGCGCCAAAGAATGGTCTTGTGGAAAGCCATGCGGAAAGCTCTTATCGTGTGGTCACCATAACTGCGAGACTCCTTGCCACTCTGGTGACTGTTTACCTTGTCCCAAAGAAAGTGTACAGAACTGTTTGTGTGGAAAATTCCAGAGTAAACGGTCTTGTGCTAACCCTGAATGGCAATGTGAAAAGGTTTGTGGAAAAGTCTTGTCGTGCGGCCATCACACATGCGAACAAGTTTGTCATGCAGGGAACTGTGGTGACTGTCCACGAGCTGGGAACAGGAAATGCCCTTGTGGACAAACATCTGTTTCTCTTCCTTGTACTGAAGACATCCCCACATGTGGCAGCACATGTGACAAGCTATTAGCTTGCAACAGACATTATTGTACTCAAAGGTGTCACACAGGGCCTTGTGGAACCTGTCGACAAATGATTAAAAAGAAATGCCGTTGTGGAAAGCGGGAGAAAGATGTGGTGTGTTCACAGGACTTTCTTTGTGAAATCAAGTGTCAGAAGATGAGACAATGTGAACGGCATCAGTGCAGGCGTAAGTGTTGTAATGGCCATTGTCTTCCATGTGAACAGATTTGTAACCGACATCTGAATTGTCGGAATCATAAGTGCCCATCACAGTGTCACAGAGGTCCATGTTATCCTTGTCCGCTGACCGTAGATGTGAAGTGTTTTTGTGGCGCTACAGTTCTGACTTTACCATGTGGAAGGGAGAAAGTCACCAAGCCACCAAAATGCACTGAACTCTGCAGAGTTCCACCTGATTGTCATCATCTTCAGCGTGAGCCTCATCATTGTCACTATGGACCATGTCCTCCTTGTCGTCAGAGTTGTAACTTGGCCCTTCCTTGTGGACATACCTGCCCTGCTAGTTGTCATGACAACCAACCAGATCCATCAGAACTATTAAAGACTTCAATCAATGGATTAGCTTCTCTTTCAAATTCCAAGTCAAAAACTGCCAAGTTTGTAGCACTTCCATGTCCACCCTGCATTATTCCTGTTGAAATGAGCTGTTTTGGTCAGcatgagATCAGCCCACTACCTTGTCATAAAGCAAAGGTGTTCTCATGTGCTAGACCTTGTGGCCGTCAGTTGGCCTGTGGGACACACACCTGTCAGATTGAGTGCCACACTGTCGTTAATGCAAAGAATGAACAAGAGGCTGGCACTAATTGTCAAGTTTGTAGGGAACCTTGCTCCAAGCCTCGACCCAAAGGATGCACCCACGCCTGCCCTTTTCCATGTCATAAAGGAGACTGTCCTAGTTGCAAGGAGATTGTCCAGCTGAAGTGTCATTGCAAATTGATGACTGTCTTTGTAAATTGCAGTGACCTGACATCTGACAATGAACAAATGTGCAATGAACTGAGGTCCTGTAAAAATCAGTGTCCAAAGAAATTAGCTGGGTGTGGTCACCGCTGCACATCTATTTGTCACCCCGGCCCTTGCCCCTCCTCAGACAAATGCACCAAGAAAATCTCTGTGCGATGTCCTTGTCAGAGAAGGAAGAAGGATTTCCCTTGCCATGCAGTTCAAAAAGGGGAAGGTTCATTAGTATGTGACAAAGATTGTGATGATAGCAAAGCTAAACAAAATAAAAAGATTTCTGTGGAAGAAGAGAAAAGGAAGCAAAAAGAGCTTAAAGCTCAACAGGAGGAACTTGAGAGGTTTGAAAGGAGACAAAAAGGAAGGCAAAGAAAACCAAGAAAAAACGTTGAAGAAATAGTAGAACCATATTGGTTTCAGCGTCACATGTTAGCTATTCTAATGCTTTCAGGAGGGATTGCTTTGGTTGCAGGTCTTTTCTTTATAGCACTAGACTAA

Transcript

amic_s0012.g84.t1

GTCCTCGTGTACATCAACGGTTCGTAGAAGTTGATGTTGGATTTTAACGAAAACGAACAAAAAAGCTGACGCAGAGGTTTGTTAGCAAGGAACAAATATGAATAAAAGGCCATTATTTCTCGGCAAAGGTCGCGGAAGAGGTCGCGGCAACGAACAGCAAAATGCCAAACCTTCTGCGTCTTGGAATCGGCGTAACACCCGTGGAAATGCAGGAGTTCTCCCTTCGGTTGTTAAAGGAGATCACGGTCCGGCGATCAACAGCGAAAAATCCCCTGGAGTCGATGAAGTTTCTCGGGAGAGAATGGCAAAGGCGGAAAAAATAAAGGAGTCTGCCAAACGATTCATGGAGAAGGCAGAGGATGACTTAGTAGAATCCTCTGAGGACGAGGAAGTGAACGACGATGAAATATTATCTAACACGTTGAAAAACTATAGAAATTCCTCGAAAGATAATGAAACAGACCTTGAGAGAGCTGCACAATATCTGCTGGACTCATGCAAGCCTGGAGCCAATGTGTGTTTGATTTGCATTGCTTCAATTAAGCATGTGGATGCTGTGTGGAGCTGCAGCCAGTGCTATACTGTTCTTCATCTTCTGTGCATTCAGAAGTGGGCACGAGATGGTGCTGCCCTTGCTCAACTATCCTCACAAGAAGATTTGTCTCCAGCTGATCTTCCGTGGTTCTGTCCCAAGTGCAGATTTGGGTTTAAGCAGTCCGATTGTCCCACAAGATACTACTGCTACTGTGAAAAACAGGAAAATCCTTCATTTGACCCCTGGCTCACCCCCCATTCCTGCGGGCAATCCTGTAGTAAGCCTCTCAAACCTGACTGCGGTCACGATTGTCTTCTCCTTTGTCATCCAGGTCCCTGCCCTCCTTGTCCAAAAACTGTCCGTGTGTCATGTCATTGTGGCTCTGCAGCTCCCATAGTTCGGCGTTGCAGCGCCAAAGAATGGTCTTGTGGAAAGCCATGCGGAAAGCTCTTATCGTGTGGTCACCATAACTGCGAGACTCCTTGCCACTCTGGTGACTGTTTACCTTGTCCCAAAGAAAGTGTACAGAACTGTTTGTGTGGAAAATTCCAGAGTAAACGGTCTTGTGCTAACCCTGAATGGCAATGTGAAAAGGTTTGTGGAAAAGTCTTGTCGTGCGGCCATCACACATGCGAACAAGTTTGTCATGCAGGGAACTGTGGTGACTGTCCACGAGCTGGGAACAGGAAATGCCCTTGTGGACAAACATCTGTTTCTCTTCCTTGTACTGAAGACATCCCCACATGTGGCAGCACATGTGACAAGCTATTAGCTTGCAACAGACATTATTGTACTCAAAGGTGTCACACAGGGCCTTGTGGAACCTGTCGACAAATGATTAAAAAGAAATGCCGTTGTGGAAAGCGGGAGAAAGATGTGGTGTGTTCACAGGACTTTCTTTGTGAAATCAAGTGTCAGAAGATGAGACAATGTGAACGGCATCAGTGCAGGCGTAAGTGTTGTAATGGCCATTGTCTTCCATGTGAACAGATTTGTAACCGACATCTGAATTGTCGGAATCATAAGTGCCCATCACAGTGTCACAGAGGTCCATGTTATCCTTGTCCGCTGACCGTAGATGTGAAGTGTTTTTGTGGCGCTACAGTTCTGACTTTACCATGTGGAAGGGAGAAAGTCACCAAGCCACCAAAATGCACTGAACTCTGCAGAGTTCCACCTGATTGTCATCATCTTCAGCGTGAGCCTCATCATTGTCACTATGGACCATGTCCTCCTTGTCGTCAGAGTTGTAACTTGGCCCTTCCTTGTGGACATACCTGCCCTGCTAGTTGTCATGACAACCAACCAGATCCATCAGAACTATTAAAGACTTCAATCAATGGATTAGCTTCTCTTTCAAATTCCAAGTCAAAAACTGCCAAGTTTGTAGCACTTCCATGTCCACCCTGCATTATTCCTGTTGAAATGAGCTGTTTTGGTCAGcatgagATCAGCCCACTACCTTGTCATAAAGCAAAGGTGTTCTCATGTGCTAGACCTTGTGGCCGTCAGTTGGCCTGTGGGACACACACCTGTCAGATTGAGTGCCACACTGTCGTTAATGCAAAGAATGAACAAGAGGCTGGCACTAATTGTCAAGTTTGTAGGGAACCTTGCTCCAAGCCTCGACCCAAAGGATGCACCCACGCCTGCCCTTTTCCATGTCATAAAGGAGACTGTCCTAGTTGCAAGGAGATTGTCCAGCTGAAGTGTCATTGCAAATTGATGACTGTCTTTGTAAATTGCAGTGACCTGACATCTGACAATGAACAAATGTGCAATGAACTGAGGTCCTGTAAAAATCAGTGTCCAAAGAAATTAGCTGGGTGTGGTCACCGCTGCACATCTATTTGTCACCCCGGCCCTTGCCCCTCCTCAGACAAATGCACCAAGAAAATCTCTGTGCGATGTCCTTGTCAGAGAAGGAAGAAGGATTTCCCTTGCCATGCAGTTCAAAAAGGGGAAGGTTCATTAGTATGTGACAAAGATTGTGATGATAGCAAAGCTAAACAAAATAAAAAGATTTCTGTGGAAGAAGAGAAAAGGAAGCAAAAAGAGCTTAAAGCTCAACAGGAGGAACTTGAGAGGTTTGAAAGGAGACAAAAAGGAAGGCAAAGAAAACCAAGAAAAAACGTTGAAGAAATAGTAGAACCATATTGGTTTCAGCGTCACATGTTAGCTATTCTAATGCTTTCAGGAGGGATTGCTTTGGTTGCAGGTCTTTTCTTTATAGCACTAGACTAATTTCCCTATGGGAAATGGTCCTTCAACATTCATGTAGCACCCAAAACTCATCTTCAGCCAATAAACACAAATTATTAGGTGCCACAGTTATGGATTAAAATATTGAGAGCCAACTTTTCTGGACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JMY5	NF-X1-type zinc finger protein NFXL1 OS=Xenopus laevis OX=8355 GN=nfxl1 PE=2 SV=1
Q6ZNB6	NF-X1-type zinc finger protein NFXL1 OS=Homo sapiens OX=9606 GN=NFXL1 PE=1 SV=2
Q9FFK8	NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana OX=3702 GN=NFXL2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001383 (this species only)
Transcription factor family	zf-NF-X1 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01422 all species →	zf-NF-X1	NF-X1 type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034078 all species →	Family	Transcription factor NFX1 family	Interproscan
IPR000967 all species →	Domain	Zinc finger, NF-X1-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12360 all species →	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15683	NFXL1, OZFP; NF-X1-type zinc finger protein NFXL1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.