Gene detail

Detailed information of amic_s0013.g113.t1 in Acropora microphthalma

Genomic Location: sc0000013_pilon:1512548...1523474
NR annotation: XP_029193544.2, coiled-coil domain-containing protein 174-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0013.g113.t1

GCAGAATGCAAAACAACATGGCAGCCAAAAAGGTGTTTGAATTAAACGAAGCTTCGATTGTTGATTTGAAGGCGGAACTTATTCGTAAAGAATCTCAGCTCAAACGAGAGAAATTTGGTGAAGAGCAGAAAGTTAATCGACAGCCCAAGGGTGGACTATGTCGACTCGTTGGGCAGAGAAAGAAGGTGTCTTCGCAAAGATCTAAAACAACTTCAAGACATGGACAAGGACTTTACGGCAGCCAGGAAAAGTCCGCCAACTCTGTTGTCTGAAGACATGAGGCGAGAGCTGATGAGGCAGCAATGGGAGAAAGAAGAAGAAGAAGCAATGAATAAACCAGTCGGCCCTTTGCATTACCAAGACATTCGCTTTGATGAAATTCGAACACACGGTGTTGGGTATTATCAATTTTCGACCAATGAGGAAGAAAGACAAGAACAGATGAAGGCGTTGGACAAACTGAGGGAGCAGACCTTAGAGCAACGAGTCCGTGCTCAAAAACTCAAAGACAAACGAAAGGCTGCCTTGGACGCTCGACTCGCCAAAGTCCGGGAAAGAAAACTTAAAAAGCTCAAAGCGTCGGACGAATTGAGCGTGGAGACAACGGAAGAGAGTGTGGATACGAAAGATAGAGGGGAAGAAGCGGCTAAAGGAAGTTATGAGAACGAGAGAAATGAAGGTGGTGATGAGAAATTAAAAACAGAAAACAAGGAAGAGGGGAAGTTTGCTGCCTTGCGCAGGGCTAACAGAAGACAAGGCCTACCAGAGTGGGCACTGCATAAAATAAAACAAAGCGACCGACGTCCACAGTCATCACTCTTTGACCCGCGAGAAGAAAGAGACGATCTCTTCGCCCCCCCAGCCTTCTACTACGAAGACAACACGTCAGCAAGAAGCGATAAAAACAAAAGAAAAGAACCAGCCAATTTGTGTAGAAACGAGAAAAACATCAGTGAACGAAAAGAAGAACTACAAAGTCAAAACCAGGAAGCACGTAACCAAAGAGAGCAACCTCAATGCCAGCCACAGGCACAGCAAAGTCACATACAACAACAGCAACAACCCCATCCCCCTGAGTACCCACCTCTACCTCCTCCTCCTACTCAGAGACATGTTCAAGCTGCGTGGACTGGGTATCAATGGCAACCGCCGCCTAGCATACCCCCTCCACCGATCCCTCAGCAATTGCCATGGCAACCGAGTTTTCCATTTAACGTTCCACCGCCACCTCCGTTTCCTTGGCAACCAAATACGTTTGCATGGCAATCGCCCCATGGTTCTCAACCAATGGGAACAGCCCCATTACCTCGTCCCCATGCCTTCACGACTGGGAATTCCACGAATTCCAGCACGTCTTTTCCTAGTAGAGGGCCTGCATCTGATACGCGAGAACCACATGCACATTCTGTGGAGCACAAAGACGAAGCAAGGGAAAGTAATAAGACTGAAGAGAGAACAATACCGTCCAATCAACAGGTGGCAGATTTTGTCGCTCAGTTTCGATCTTGAATTGAATCGATTCTTGAACCTGACGGAAAGGATGAAATAAAGTATCAAAAGGACAGATTTTTTTTCAAATTTTGTTGTTGCTCGGGACAACTGGTTGTTTTTTTTTTTACCCGCCAGCAAAGTATTGAAGGACTGAGTCACTATCAGTATTGCACAATCTACGAATTTGAAAACTTACAGAGCGTCCATTGGTTTTGCCAACAACATATGTGGACTTTAAGACTTTCTTGATGCCGTCCTAAGCTCCCTCAATAGAGTTTAaagcctggttttcactagcgacacaagcacaagcgcaagcacaagggagcttatttcaccgagaaaaagggcctgacgcaagcacaagcacaaggttcaacatttttccttttccttgcacttcgcttatgcttgcgttatgttggttttcacttgacatgaattcctaatgtttgcacctacgcttgcgtcactagtgaaaaacaggcttaagaaatgacgacggcaatggcaacgacaacaccacgaatcaatgatttcattggtt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIH9	Coiled-coil domain-containing protein 174 OS=Gallus gallus OX=9031 GN=CCDC174 PE=2 SV=1
Q5PQS7	Coiled-coil domain-containing protein 174 OS=Rattus norvegicus OX=10116 GN=Ccdc174 PE=2 SV=2
Q6PII3	Coiled-coil domain-containing protein 174 OS=Homo sapiens OX=9606 GN=CCDC174 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005143 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13300 all species →	DUF4078	Domain of unknown function (DUF4078)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025066 all species →	Family	Coiled-coil domain-containing protein 174-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15885 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25178	CCDC174; coiled-coil domain-containing protein 174	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.