Gene detail

Detailed information of amic_s0013.g2.t1 in Acropora microphthalma

Genomic Location: sc0000013_pilon:27126...47179
NR annotation: XP_029213960.2, phosphatidylinositol-binding clathrin assembly protein LAP-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0013.g2.t1

ATTAAAGACAGCCATCTTCATTTGTCGTATATTGGCGACAGAACCATTATCTCCCCCCTGTTTACTTAAATTTCACCTTCTTATTGAGATTTTTGGCAAGTCTTTGGAAAAAAAAATGTCTGTTGTAGATAAATTGGACGCGGCTAGGCACTCTATAACTGGTTCGTTTGTGGCTAAAGTTGTTTGTAAGGCGTCGAGTCGTGAGGTTATGGGTCCTAAAAGGAAGCATTTAGATTATCTGGCGGCCTGCACACAAAACGAACATGTGTCTATTCCGAATATAGCGGAGTTAATTTTCGAGAGAATTTCAAACTCGAGCTGGGTTGTAGTTTTCAAAGCGGAATGTACCTTCCACCACTTGATGTCTTATGGCAACGAGAGATTCATTCAGTATTTGGCATCAAGAACTTCCAATTTCAACCTGGGTAATTTCCTTGACAAAAGTGGTGTGCAGGGCTATGATATGTCAACATTTGTAAGAAGATATGCTAATTATTTGAATGAGAAAGCAGGCTCTTACAGAGAAATGGGATATGACTTCTGTCGACTCAAACGAGGAAAAGAAGAGGGTGTTTTAAGAACCATGGATGCTAGCAAGCTCCTCAAAGCACTCCCTGTTCTTCAAAAACAGATTGATGCCTTGCTTGAAGTTGATATTAAGTCAAGTGAATTGACCAACGGTGTGATAAACTGTGCCTTTGTCCTCCTTTTCAAGGACTTGATAAGGTTATTTGCTTGCTACAATGATGGTATCATTAATCTACTGGAAAAGTATTTTGACATGAATAAGAAAAACTGCAAGGAGGGACTGGACATATACAGGAAGTTCATCACAAGAATGGACAGGGTCTCAGACTTCTTGAAAGTTGCGGAGGATGTTGGTTTTGACAAAAATGACATTCCTGACCTGAGCAAGGCCCCCAACAGTCTTTTGGATGCCCTTGAAAATCATTTTCAGTCTCTGGAGAAAGGAAAGGCAACTAGCCCTCCTTCATCAAAGCCCCTTACCATCCCCAGCATTACACTTCCACCGTCAGCAACAGATGCATTCAGTGCAGCTAAGTTCACAACTAAGTTTGATGGAGATGATGCTGTTGACTCTGCACCAAAGAATGATCTCCTTGAAGAGGAAGAAAAATATCTTGAAGCTTTTAAGAAAGCCAAGGAAACTGGAGCACCTGTACAAGTGCCATCATCTCAGCCTCAAAAGTGGGAGTCGCTGGGTGAACCAGAAGTGTCCAAACCAGCTGCCACAACATCAGCCAGTAATGATCTCTTACAAATGAATACTGCATTCTCCGCTAGCTCAGCTTTCCCACCAAGCCAAGCTTTCCCAGGTCCTCAGGGATTTGGTCCTGGCCCAACTTCAAATGGTTTTGGGGTGGCTCCACAGACAGGTCCTTGGACTGCCACTTCAGAAATACCAGCCTGGCCAACAGCAAGGAATGTTCCCGCAACAGACCGCATATCCTGCACAACCGTTTCAACCGAACAAACCCCTACAACCAACGGACCCGTTTGGGCCAATACCCGGAAGCCAGGTCCGATTCTAAATCTCAAAGAATACAATTCGGGGGCTTTGAAGCTGGTCTGTAATTAGCTTATTTTGCACTGCATCTAAAATCGGGATGTACTTTTTGCCGTAGTCAAGCAATTTTTAATCACCGGGGTTTTTTTGCAATTCAGACAACGACTTATGCGCACAAACTCCCTAACACCCAAGGGTCGGTGTTTCTTTAATCAAATGAGTTACGTAGTCACAGTTGAGAAGACGCGGTGGGCATATATCTTGTATGCGATTCGGTATGCCAGTCGTGGAGTCAGGGTTGATCAGTATACCATTATACTGATCAACTCTGATCAGTCTTGTCGCAGTTTTTAGTGTAACTTAATTGAATATGGAGCGATTGCATTTGGGGTCAACAAATATGAGCTTGACGGAATACATAAATCAATTGCTTTGTGGATAGCTTGTGCTGTTAGCCGAAGGAAGTTTAAATGTTATACAAGGAGCACCTTTATTTGGCTGTCAGACGGGGCGGGAAGGATGGAGGGCACACCATTTATAACATTTGGTAAGGTCCCTCTATTTCTGCATCAGCATTTTTGACCAAGATTTCACTTCACGGCCTGTCATTGTGTGTAGGATAATTGGGAATTCAAGGTCCAGTTGTCCACGTAATTAAACTGGAGTAGGGCTATTGGTAATCATAAAGTTACTCAGCTGAGTTCGAGTGATGTAAATGAAAATCTAAAAGAAATTCAAAAGTTTGAAAGAAGGGCTTGTTACAGTAACTCTACTCTTTCAACGCCAAAAAATGGAGCTCAAGGTGTCAGTTTTCTTTTCGTTTCGTTTTTGGTTTTAATTATTTGTTTGTTTTGTCGTATGTTGATGTCGTGGGAGATTTGAGTTTTAAATCATGGCTTCCCATTTATATTGCTCTGTGGATTGTCCTAGCAGGTGAATTAGAGGCTCATGGCACCGTGTTTTTGTTATAAAGACCGTTGTAATTTAGTTGATAACTTTAGCAAAGAAAGCCGTGTTGCTTAAATTAAGCATTTCCCCAATGGTTATTATCTTGCTACTGTTCAATGCTAGTCGCTTTGTACAATAATTTGCCAGCACTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VI75	Phosphatidylinositol-binding clathrin assembly protein LAP OS=Drosophila melanogaster OX=7227 GN=lap PE=1 SV=3
O55012	Phosphatidylinositol-binding clathrin assembly protein OS=Rattus norvegicus OX=10116 GN=Picalm PE=1 SV=1
Q13492	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens OX=9606 GN=PICALM PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004236 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07651 all species →	ANTH	ANTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014712 all species →	Homologous_superfamily	ANTH domain superfamily	Interproscan
IPR045192 all species →	Family	Clathrin coat assembly protein AP180-like	Interproscan
IPR013809 all species →	Domain	ENTH domain	Interproscan
IPR011417 all species →	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22951 all species →	CLATHRIN ASSEMBLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005545 all species →	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005905 all species →	Cellular Component	clathrin-coated pit	Interproscan
GO:0006900 all species →	Biological Process	vesicle budding from membrane	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan
GO:0016185 all species →	Biological Process	synaptic vesicle budding from presynaptic endocytic zone membrane	Interproscan
GO:0032050 all species →	Molecular Function	clathrin heavy chain binding	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0098894 all species →	Cellular Component	extrinsic component of presynaptic endocytic zone membrane	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0013.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.