Gene detail

Detailed information of amic_s0013.g6.t1 in Acropora microphthalma

Genomic Location: sc0000013_pilon:72287...76515
NR annotation: XP_015769491.1, PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0013.g6.t1

ATGTGTCAGGAGTATCACTGTGACTGCTGCTCAGAAGAAATACCAGCAGACGTTTGCGAGTGCGTCGTGTGTTACCATGGGAAGGTTAGAGGAAATTCCGCTTTGCGCACCATAGTAAAGAGCCTCCAAGAAGAGCCCAAGAAAGACCCTTGCTGTAAAAAGGCTAACTCGAACTCAAATCCAACAAAGTGGATCCAGTTACCAGAATGTTGTCTTAAGAATAAAACCTTGCGGGATGATACAACTGATCTCCCAAGTCAAACCACACCCAAATGTGGTAAAGAAACGCCTACAGGCAAACCAAACGCAGAGAGCAGCGACGACTCTGAAGCTGTACCACCGGTACGCCAGACCACAACAAAGCTGCGAGTACAGAATATATGTTGTGTAGGAGAAATCAAACTCGTCAAAGATTCACTTGAACCGCTGAAGGGCGTTACATCCATAACGGTCAACGTGATAGGTCGTGTAGTGTATGTCCGACACGATCCAGAGATGATGTCACCCTCAGAGCTCGTCAGTTCCTTAAACCGAGTTCACCTGGGAGCAAGCATCATGGAAAGTGGCTCCCAACAGGCCGAAAGCAAGATCAACCGTCTTCCTCCCACTCTTTTATCATTTTTTATATATCTCTTAGCGCAAACCATTATTTTTATGGTAGCTGTTATAGCGCTCTTTGCTAAGGCATCTTGGTATCGGTGGATAGCCATTGCGGAGATAATATTTGGTATTGCACCAGTTTTGAGAAAAGCGTTGGTGTCTTTCAAGACCTTCTCAGTCGACATAAATGTGCTTATGCTTATTGCCATGTCAGGAACTCTGGCAATTCGACAATGGTTAGAAGGGGCAGCTGTAGTTTACGTATTCTCTCTAGCAGAAGGATTGCAGGAGCTTTGCATGCACAAAGTTCAGCAAACAATCTCTGGATTAATGGTCGAGGCACCTCAAGTAGCGATAATGGCGATTACAGGCCAGAGTGTTCCGGTTGAACAGGTAACTATAGGAACAGCCATTGCAATCAGACCTGGTGAACTCATTCCCTTGGACGGTAAGGTAGTGAAAGGCAAAGCCGCTATCGATGAAAGTTCTGTTTCTGGAGAATCTGTACCTGTTGAGAAAACTGTGGGCTCGAAGGTGTTTAGTGGAACTGTCAATCAAAATGGCTACTTGGAAGTTGAGACCACATCCGACTCCACTTCCTCTACAGTCGTCAAAATTGCACAGCTCGTTCAAGAAGCCAAGACTGGTTCAGCGAGCACTGAATTGTGTGTAAACCAGTTTGCCAAGTACTATACACCTGCAGTGGTCGTTAGCGCGACTCTACTATTTGCTATTCCCGCCATACTTGGTGCAACTGGTGTGGGTACGTATTCAGAAGAGATAACAGAGTGGGGCCGAAGAGCACTTGCACTTTTGGTTATAGCTTGCCCCTGCGCTTTGGTCATGTCAACTCCGATTGCAGTGGTTTGTGGTATCACTGCGGCTGCACGGAAAGGAGCTCTAATTAAACGGGGGGCTAGTCTTGAGACGCTTGCGGAATTAGAAGTTTTAGCTTTTGACAAAACGGGAACTCTGACTGAAGGGAAGTTTCAAGTTGTTGGCATGGAATGTTCGTTTGGTGTGCAAGAACAAATTGTCCTGCGTTTAGCTGCGGCGCTTGAAAGCAAGTCTAGTCACCCTCTCGCAGCAGCTATAGTGAATGAGTTCACTGGTTGTGTCACGGAAATGGCCACTTCGCAAATCTTAACTTTACCAGAAGTCTCACATTTGGAGCTTCATGAAGGTCAAGATATACTCAGACCCAACAGTCTGGCTACGCTTGATTGGCTGAGAAATCTTCGTGTCCACTCAGCTATGATCACTGGTGACAATACACGGACAGCCATGGCTGTCAAAGATAAACTAGGCCTTGACGAGTGTATTGCCGAAATGAAACCACAGGACAAGCTGGCGTGGGTCAAACAAAGACAAAATGGAATAAAGGACACTGATGATAGGAACTATGACAATGATCAACCAACTGGTCATCTATTCTGCTTATCTACCTGCTGTTTACATCGTGGCTGCCATTCCATAAGATGCCGTGAAAACAAGAAAAGTACTGTGGGAATGGTCGGGGATGGTGTTAACGATGGTCCAGCGCTAGCGTCGGCGAATGTTGGAATTGCGATGGGCGCAGGAGGTACAGCTTTGGCAGTGGAAGCTGCAGACGTCGCACTGATGAACAATAACCTTACCAAAATACCGGAAATAGTTGAACTTGGACGTTTCTGTCGCCGCATTGTTTTTCAGAATATTGGTCTTTCGGTTATTCTTAAGCTTGCTATGGTGATAGCGGCGCTTGCTGGAAAGGCTTCACTCGTGATAGCTGTCATGGCGGATGTACTTGGTTTATTGCTCGTGCTACTAAACGGCATAAGACCTCTTTGGTGGAAGGTCACTGACAAACACAAGAACTTGGATATTTAG

Transcript

amic_s0013.g6.t1

TTGGAAGTACTGAACCATTGCCATTGTTTTATGTCAGGCTTTGAATAAGCCAGAACTTCCCGTCAAATTTACACATTATTCAGTTGTCAGTGTGATTAGACCACCTCAATCATGTGTCAGGAGTATCACTGTGACTGCTGCTCAGAAGAAATACCAGCAGACGTTTGCGAGTGCGTCGTGTGTTACCATGGGAAGGTTAGAGGAAATTCCGCTTTGCGCACCATAGTAAAGAGCCTCCAAGAAGAGCCCAAGAAAGACCCTTGCTGTAAAAAGGCTAACTCGAACTCAAATCCAACAAAGTGGATCCAGTTACCAGAATGTTGTCTTAAGAATAAAACCTTGCGGGATGATACAACTGATCTCCCAAGTCAAACCACACCCAAATGTGGTAAAGAAACGCCTACAGGCAAACCAAACGCAGAGAGCAGCGACGACTCTGAAGCTGTACCACCGGTACGCCAGACCACAACAAAGCTGCGAGTACAGAATATATGTTGTGTAGGAGAAATCAAACTCGTCAAAGATTCACTTGAACCGCTGAAGGGCGTTACATCCATAACGGTCAACGTGATAGGTCGTGTAGTGTATGTCCGACACGATCCAGAGATGATGTCACCCTCAGAGCTCGTCAGTTCCTTAAACCGAGTTCACCTGGGAGCAAGCATCATGGAAAGTGGCTCCCAACAGGCCGAAAGCAAGATCAACCGTCTTCCTCCCACTCTTTTATCATTTTTTATATATCTCTTAGCGCAAACCATTATTTTTATGGTAGCTGTTATAGCGCTCTTTGCTAAGGCATCTTGGTATCGGTGGATAGCCATTGCGGAGATAATATTTGGTATTGCACCAGTTTTGAGAAAAGCGTTGGTGTCTTTCAAGACCTTCTCAGTCGACATAAATGTGCTTATGCTTATTGCCATGTCAGGAACTCTGGCAATTCGACAATGGTTAGAAGGGGCAGCTGTAGTTTACGTATTCTCTCTAGCAGAAGGATTGCAGGAGCTTTGCATGCACAAAGTTCAGCAAACAATCTCTGGATTAATGGTCGAGGCACCTCAAGTAGCGATAATGGCGATTACAGGCCAGAGTGTTCCGGTTGAACAGGTAACTATAGGAACAGCCATTGCAATCAGACCTGGTGAACTCATTCCCTTGGACGGTAAGGTAGTGAAAGGCAAAGCCGCTATCGATGAAAGTTCTGTTTCTGGAGAATCTGTACCTGTTGAGAAAACTGTGGGCTCGAAGGTGTTTAGTGGAACTGTCAATCAAAATGGCTACTTGGAAGTTGAGACCACATCCGACTCCACTTCCTCTACAGTCGTCAAAATTGCACAGCTCGTTCAAGAAGCCAAGACTGGTTCAGCGAGCACTGAATTGTGTGTAAACCAGTTTGCCAAGTACTATACACCTGCAGTGGTCGTTAGCGCGACTCTACTATTTGCTATTCCCGCCATACTTGGTGCAACTGGTGTGGGTACGTATTCAGAAGAGATAACAGAGTGGGGCCGAAGAGCACTTGCACTTTTGGTTATAGCTTGCCCCTGCGCTTTGGTCATGTCAACTCCGATTGCAGTGGTTTGTGGTATCACTGCGGCTGCACGGAAAGGAGCTCTAATTAAACGGGGGGCTAGTCTTGAGACGCTTGCGGAATTAGAAGTTTTAGCTTTTGACAAAACGGGAACTCTGACTGAAGGGAAGTTTCAAGTTGTTGGCATGGAATGTTCGTTTGGTGTGCAAGAACAAATTGTCCTGCGTTTAGCTGCGGCGCTTGAAAGCAAGTCTAGTCACCCTCTCGCAGCAGCTATAGTGAATGAGTTCACTGGTTGTGTCACGGAAATGGCCACTTCGCAAATCTTAACTTTACCAGAAGTCTCACATTTGGAGCTTCATGAAGGTCAAGATATACTCAGACCCAACAGTCTGGCTACGCTTGATTGGCTGAGAAATCTTCGTGTCCACTCAGCTATGATCACTGGTGACAATACACGGACAGCCATGGCTGTCAAAGATAAACTAGGCCTTGACGAGTGTATTGCCGAAATGAAACCACAGGACAAGCTGGCGTGGGTCAAACAAAGACAAAATGGAATAAAGGACACTGATGATAGGAACTATGACAATGATCAACCAACTGGTCATCTATTCTGCTTATCTACCTGCTGTTTACATCGTGGCTGCCATTCCATAAGATGCCGTGAAAACAAGAAAAGTACTGTGGGAATGGTCGGGGATGGTGTTAACGATGGTCCAGCGCTAGCGTCGGCGAATGTTGGAATTGCGATGGGCGCAGGAGGTACAGCTTTGGCAGTGGAAGCTGCAGACGTCGCACTGATGAACAATAACCTTACCAAAATACCGGAAATAGTTGAACTTGGACGTTTCTGTCGCCGCATTGTTTTTCAGAATATTGGTCTTTCGGTTATTCTTAAGCTTGCTATGGTGATAGCGGCGCTTGCTGGAAAGGCTTCACTCGTGATAGCTGTCATGGCGGATGTACTTGGTTTATTGCTCGTGCTACTAAACGGCATAAGACCTCTTTGGTGGAAGGTCACTGACAAACACAAGAACTTGGATATTTAGCGTTTAGGCTAATTGAAAACACTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3BF39	Cadmium/zinc-transporting ATPase HMA2 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA2 PE=1 SV=1
Q9SZW4	Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana OX=3702 GN=HMA2 PE=2 SV=1
Q8H384	Cadmium/zinc-transporting ATPase HMA3 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001597 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF00403 all species →	HMA	Heavy-metal-associated domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006121 all species →	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR051014 all species →	Family	Cation Transport ATPase Type IB	Interproscan
IPR036163 all species →	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48085 all species →	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01534	zntA; Zn2+/Cd2+-exporting ATPase	EC:7.2.2.12 EC:7.2.2.21	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.