Gene detail

Detailed information of amic_s0013.g70.t1 in Acropora microphthalma

Genomic Location: sc0000013_pilon:918115...932929
NR annotation: XP_029196703.2, DNA mismatch repair protein Msh2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0013.g70.t1

CCATGGCTGTCCAGCCTTGCCAACAGTTTTCTCTAGATGGTGCAGCAGAACAAGGTTTCCTTGCTTTTTATCGATGTTTACCTGAGAAACCAGAGACCACTTTTCGTGTTTTTGATCGCTCGGACTATTACACTGTCCATGGACCAGATGCATTGTTTGCTGCTAAAGAGGTTTTTAAGACGACAAGTGTTGTGAAACATCTTGGTTCAGGAGACAAGAAAGTGCCATCTGTTATTTTGAGCAAAATGAACTTTGAGAGTACAGTAAGGGACCTGTTGTTGGTACGTCAGTACAGAGTAGAGATGTACCGTGCTGCTAGTAAAGCATCAAAGAATACATCTGCCTGGGAACTTGTAGCAAAGGCTTCACCAGGAAATCTACAGCAATTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGTGTCAACAGTTGTCATGTCAATTAAACTTGGCACAGACAATGGTCAAAGGCTTGTTGGTGCCTCATATGCTGACCCAGCTGCAAGAAAGCTTGGAGTTTGTGAATTTGTGGACAATGACCAATTTTCGAATCTCGAGGCCCTGTTGGTCCAACTTGGCCCAAAGGAATGTCTTCTTCCCCAACATGATACCAGCCCTGATTCAACCAAAGTACTCGAAGTGATTCAAAGAAGTAATGCCCTTGTTACTGATAGGAAAAAAGCTGAGTTTTCCAACAAAGACATTGTTCAAGATCTCAACAGACTTTTGAAGATGGGTGCCTCTGGAAACAGTGCAACACTTCCTGAAATGGACCTGACGCAAGCCACTGCTGCATTAGCAGCTTTGATCAAATACTTAGAGTTGCTTTCAGATGAAACAAACTTTGGCCAGTTTCACCTGAGTACATTTGACCTATCACAGTTTATGAAGCTTGATTCAGCTGCCGTGAGGGCTCTTAATCTTCTTCCAAACCCTTTGGATGGGGGGAACAAAAGTATGTGTCTTGTGGGCCTTTTGAACAAGTGCAAGACAGCTCAAGGTCAGAGATTGCTAGCCCAGTGGGTGAAACAACCACTGATGGACAAAAGCAAAATTGAGGAAAGACTTGACATTGTGGAAGTGTTTTTTGAAGATACGGAGCTTAGACAAACCATTCAGGAAGAACTGCGAAAAGTCCCAGATTTTTCCAGATTGGCCAAGAAGTTCCAACGTCAAAAGGCAACTTTGCAGGATTGTGTGAGAGTGTACCAAGCCCTTCACAGACTTCCCACTTTTAATGGTGTCCTTGCAGCTTATCAAGGCAATCACCATGAACTAATACGGGATTGTTTCACATCACCCCTTCAGGATCTTGTCCAGGACTTTGAAAAGTTTACAGAGTTAGTGGAAACAACAGTGGACCTCGATCAAGTGGAAAACCATGAGTACTTGATCAAGGCCTCTTTTGATGAAGGGCTGCAAGAATGCAGAGAAAAGATGGATGAGATTTTGGAACAGATACCCATTGAACTAAATAAGGCTGCACGAGACTTGGCTCTGGAAGCAGGAAAATCAATCAAGCTGGAGTCCAACAATCAATACGGATATTTTTTTCGAATAACAAAAAAAGAAGAAAAAGCTCTTAGAGGCAACAAACACTACACCACAATAGACACTCGGAAAGATGGAATAAGATTCAATAATTCTGCACTAAGGCAATTGAATGAACAATTCCAAGCTCTCAAAGAAACTTACAATGAAGTGCAAAGCAAACTAGCCAGTGAAGTTATCAAGGTGGCTGGTGGCTACAGTGAACCAATGCAAATGTTGAGTGACATCATTGCAAACATCGATGCCTTAATCAGCTTTGCTCATGTTTCTGCCAATGCTCCTGTTCCATACATCCGTCCTAAAATGACTCCAAAAGGAGAGGGGCATATAACACTTCAGATGGCCAGACATCCCTGCCTTGAAGTGCAAGATGATGTAGCTTTTATTGCTAATGACATTACACTTGAGAGAGGTCAAAACGAATTTCTCATAATCACTGGGCCTAACATGGGAGGGAAATCCACTTACATTAGACAGACAGGAGTGATAGTCCTTATGGCCCAGCTTGGTTGCTTTGTACCATGCAGTTCAGCTGAGATTGCCGTCACCGATTCTATTTTGGCCCGTGTGGGATCTGGGGATAGCCAATTGAAGGGAGTCTCTACTTTCATGTCCGAAATGCTGGAAACTGCATCAATTTTGAGGTCTGCAACAGAGAATTCACTGATCATTATTGATGAACTGGGAAGAGGCACTTCTACGTATGACGGTTTTGGACTCGCTTGGGCCATATCGCAAAACATTGCCACAAAGATCCATTGTTTCTGCTTATTTGCTACTCATTTCCACGAGCTTACCTCCCTTTCTGATGAAGTGCCCACTGTCACAAACCTACATGTGACAGCTATGACTTCAAGTGGAACTCTAACTTTGCTGTACAAGGTGAAACCTGGTGTTTGTGATCAAAGCTTCGGGATTCATGTCGCAGAACTGGCGCACTTTCCAAAAAGCGTCATTGAATTTGCCAAACAAAAGGCAGCTGAACTAGAAGATTTCCAGGGAAACACTGCAGCATTAGGTGAAGGAATTGTAGATCCTGACACTGGAACATCGCCCGCCAAAAGACGACGCTTAATCAAACAGGATGGAGAAGAAATCATAAAAGATTTTCTCACCCAAGTTGCCAAACTGTCAGTGGAAACAATGACAGAGGAACAACTCGCCCATGAAATGTCGATTTTAAAGGACAAGATGCTTGCAAGAAAAGATCCCTACATACAAGACCTGTTGGCCAATTGACTACAAGAAGCAGACAGTCCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43246	DNA mismatch repair protein Msh2 OS=Homo sapiens OX=9606 GN=MSH2 PE=1 SV=1
P43247	DNA mismatch repair protein Msh2 OS=Mus musculus OX=10090 GN=Msh2 PE=1 SV=1
P54275	DNA mismatch repair protein Msh2 OS=Rattus norvegicus OX=10116 GN=Msh2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003102 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032642 all species →	Domain	DNA mismatch repair protein Msh2, ATP-binding cassette domain	Interproscan
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006312 all species →	Biological Process	mitotic recombination	Interproscan
GO:0032301 all species →	Cellular Component	MutSalpha complex	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0013.g70.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.