Gene detail

Detailed information of amic_s0014.g104.t1 in Acropora microphthalma

Genomic Location: sc0000014_pilon:1667966...1672893
NR annotation: XP_029186977.2, putative GTP-binding protein 6 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0014.g104.t1

GGGACTTTTGAGAAGTTCCCAGGCTCCAAGTCTATTGCAGAGACGTGCAGAAAACGCCTGACTGTTAATGGCCGAGGAAGGGGATCAAGAAAGAGGCTTTGACTTCTCAAAATGCATTCTTTACGAGCCGTTTGCCTTGGAGGAGAACATCTCATTACTTGCAAACGAAAAATCACATGGTATCGGCTAAGTTCTGTTCACTTTGGTCTCACGCAGTTGCGAAATCGACTCATTCAGCCAAGGTCGAGTTTTGGTTGGGTCGTATCAGATAGAAGGGACTTTTCCAAAAGAAGCAACCCAGCCGACGTATCACGCGATCTAGATGACGATCACCCTGAGAACACTGAAATTTTACAAACGTTACGAGCTCAACACCACTACCACCATGGAGATGAGAAGGCAGACAAGAAAGGCCATCGTGTTTACGTGGTGGAGCCAGATTTCAAGTGGGGCAAACGTCGATTCAAAGCTGTCACCAGCGAACATAGAATGGACGAGGCCTGTGGACTGATCAGATCAATTGAAAATTGGCAGGTTATCGGCAAGAAAGTGGAATCTGTCAGAAAACTAGATGGAAAGACATTCTTCGGTAAAGGAAAGATTGAAGAGCTGTCTGAACGATTTGAAGAAATGAGAGATTTGGAAACTGGATTAGACAGTGTGTTCATTGATGTGGATAGACTGAACTCCAGGCAACACAAAGAACTGGAGGACCTGTGGGATATGAAAGTATTTGATCGTTTTGGGGTAGTGTTGCAGATATTCAAAGAAAGAGCCAAGACAGCAGAAGCTAAGATACAAGTGGAATTAGCAGAATTGCCATATATAAGGTCTAGATTAGCACACGGTGGGGAAGATGGGAGCAGCTATGATCAACAGAGGGGTGGAATGCATGCAATTGGTGGACCTGGTGAAACATATCTTGAGAAAGCAAAAAGAGTGTTGTTTGAAAGGGAACAAAAACTGAAAAAGAAGCTACAAGCCATCAAAAAGCACCGGGAACATGTTAGACATGAACGACATAAAAGGCATATACCAACAGTGGCAGTTGTTGGTTATACAAATGCAGGAAAAACAACACTGATAAAATCTTTGACTGGTGAGGCCAAAATGCACCCAGAAAACAAACTGTTTGCAACTCTTGATGTCACTGCTCATCCTGGGAAACTGCCATCTGGAATGACAGTCTTGTTTCTGGACACAGTTGGGTTTGTTTCAGATTTACCACCTCAGCTTGTGGAATCCTTCTCTGCCACATTGGAAGATATTACAGAATCAGATTTAGTTGTCCATGTACGGGATGTTAGTCACCCAGAATGTGAAGCTCAGTTACAGGATGTAATGACTGTCCTTGAAAAACAGCTCTGCGTCAAAGCTTCGTTGATGGAAAACATGATTGAAGTTCACAATAAGAGTGATCTTTGCGACGAAGAAAGCCTCAAGATACCATTCGGAGTACACAGCAACAGACGCGCGAGAATTTCGGCTTTGAATAAAACTGGGATGTGTGAACTGCGAGCTTTGATCGAAGACGGGATCATTGACTCAACAGGAAGAGAGATCAAAATAATTGTTGTTCCTCCTGATGGACCGCAGCTAAGTTGGCTGTATCACGAGACGACAGTGCAGGAAACCACTGCAAACGAAGAAGGGAACATTGTTGCAACGGTTATCATGGACGAAGCAACGAGAAAGAAATATCAAGCGAAGTTCGGTCACTTTGGTTAGGAGCCTACGGAGCGTATGCATGTGACGTCACTTCGTCCCTTGaagaaacagcagccatctttgtgtccagaacgaatctttcgagaatatctcttttttaatgaaaacgctttcttttgtttcggataaaaaTAAGTGGGCTGAACAAGTTAGTGAATCGGCCCGAAACATGTATATAGTAAGTTAAAAGATGAAAAGCAATGAATGTTCTGTTGAACGAAATATGAACTCAGGGACAAGCCAGTTTCGATCTTTCCAACATAGTTGTCCATCAAACGTTTTGTGTGCAGCGTACCCATTTATATTAAAACGTAACCGCAGATTCAGAGCTTGTTCATCTTGAGCTTGTCCGTTTGGTGTTGTCGATTCAAACCACGTAATATTCTCAACAATCATTTATGAATACGCACGTGCATAGTATGAAGTTTTTCAGAAACGGTTCCCGGGAGACGTCACGCGATCTCACCAGGAAGGACAGAATTTTCCCGCCAGTGGCCTGCACGCATGCTCTCCTGTTCACACTCAAAAAATTAGGGGCTTGCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCC6	Putative GTP-binding protein 6 OS=Xenopus laevis OX=8355 GN=gtpbp6 PE=2 SV=1
O43824	Putative GTP-binding protein 6 OS=Homo sapiens OX=9606 GN=GTPBP6 PE=1 SV=4
Q3U6U5	Putative GTP-binding protein 6 OS=Mus musculus OX=10090 GN=Gtpbp6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003983 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13167 all species →	GTP-bdg_N	GTP-binding GTPase N-terminal	Family	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF16360 all species →	GTP-bdg_M	GTP-binding GTPase Middle Region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016496 all species →	Family	GTPase HflX	Interproscan
IPR030394 all species →	Domain	HflX-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042108 all species →	Homologous_superfamily	GTPase HflX, N-terminal domain superfamily	Interproscan
IPR025121 all species →	Domain	GTPase HflX, N-terminal	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR032305 all species →	Domain	GTP-binding protein, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10229 all species →	GTP-BINDING PROTEIN HFLX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0014.g104.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.