Gene detail

Detailed information of amic_s0014.g131.t1 in Acropora microphthalma

Genomic Location: sc0000014_pilon:2073928...2085087
NR annotation: XP_044174879.1, LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0014.g131.t1

ATGGCAGTCGATGTGTCTCAGTTTGTAAAGAATACGCTGTCCCTTCTAACTTTAGAGAGGAATGCCGAAATAGAAGAAACCAAGTCTCTTCATGAAAATATAAGCCCAAAGGAACTTCAGAAAAGAGGTGTTTGTCTCTTGAAACTTCGAATTCGGAGCCGCAGAACTGGTTTATATGGAAGGCACCTTCTGACGTTGGAGCTTTCCAAGGCGACGAGCCCAGATGGAAAACTTCCCTCGCATTCGTTGACACCTGGAGATATAGTGGGTCTAAGCTGGTTGAATGCGGTGGAAAAGCAAAGCGATACTTCCTCAGGAATAATCAGCCGTGTCACTCAAACAGCCATCACCGTAGCATTTGATGAAACTGCTGACAGCCTGGCGTTTGATGATGATGGGCCATTTAAACTTATCAAACTGGCCAATGATGTCACACACAGACGGATCAAAAGTGCTCTTGATGCATTAACCAAATACAGAGATGGGCCAGCTGTGCATTTAATTGATATTTTGTTTGGGAATGTGTGCACTGGTCCTTCCCTACAAATAAGACCTTACACAGATGGAACAGGAGAGACTTGTGATTACTTCAACCCTGACCTTGATAAGTCGCAGAAAGAAGCTGTAAATTTTGCGCTGTGTCAAAGAGAACTAGCCATTGTTCATGGACCCCCAGGAACTGGAAAAACAACCACTGTAGTTGAGATTATCTTGCAAGCAGTCAAGAAACTAAACATGAAGGTTTTGGCCTGTGCACCATCCAATGTTGCAGTTGATAACCTGGTTGAAAAATTGTTGAAAGGAAAAGTCAAGGTTGTTCGACTTGGCCATCCAGCTCGCCTGCTCAGTGTTGTCCAAGAGCATTCACTTGATGCACTGTTGTCTGTTTCTGAGGGAACTGCAATTGTGCGTGATGTGAGAAAAGACATAGATGACACACTGAAAAAAGTTGGAAAATCAAAGAACCCATCTGAAAAGAAACATTTCAAACAAGAAATAAAATCTTTGCGAGAAGAGCTCCGACAAAGAGAGGACAAGGCTATCACAGAAATCCTTACTAAAGCTGATGTTGTCCTTGCGACCAATACCAGTGCGTCAATGGATGGCCCACTTAAACTTATCAAGCGGGACCACTTTGATTTAGTTGTCATTGACGAGGCAGCTCAGTCACTGGAGGCAGCCTGCTGGATACCCTTACTGTGGGCTCCAAGGTGTGTGCTTGCTGGAGATCATCTGCAGTTACCACCCACTATAATCTCAAAGGACGCAGCTAAAAAGGGACTACAAGTCACGCTAATGGAGAGACTCATTAAATTGCTGGGAGATGATGTTGTGCGCATGCTAACTACTCAGTACAGGATGAATGAAGCAATCATGAAGTGGTCTTCAGAAAAACTTTACGAGGGTCGACTTCAAGCGCACGCATCCGTAAAAAATCATCTGTTGAAAGACCTGCCTGGTGTACAGGAAACCGATGAGACGATGCATCCGCTTCTCTTGATTGACACTGCCGGATGTGACGTCAGTGAAAACGAGGTGGAAGATGAGGTCTCCAAAGGGAATAAAGGCGAGGCTGACATTGTTGCTGCACATGTCACTGCACTTATTTCCGCTGGACTTCAGCCATGTGATATCGCTGTCATTGCACCCTACAATCTTCAGGTGGAACTCTTGAGATTGCGCCTATCTTCTCAATACCCAACGCTGGAAATCAAATCTGTGGATGGATTTCAGGGAAGAGAAAAAGAAGCGGTGGTCATTTCACTGGTTCGCTCAAATCCAAAAGGGGAAGTCGGTTTTTTAGCGGAACACAGGCGAATCAACGTGGCTATAACACGCGCTCGGCGCCATCTTGCAGTTGTAGCAGATTCTGAGACCGTTGGCCACGATGACTTTTTAAAATCTCTGATGGATTACATGAGTAGTTATGGAGACGTCCGCACTGCGCATGAGTACGTAGACGATTCGCCACCGAGTCTTGATGCTTCAAACCTCGCTTTTGAGAATGGAGATGCGTTCTTGTCTAAATTTACTAAGACCAACAAGAAGCGGGAAAAGGTGTCAGATGTGAAGAAAACTGATAAGAAAGTGAACAAAGACTTGAGGATTAAACGAAGCGACCGAAGAAACGGGACAAATGACTGTATTGCAGCGAAAGTAAGTAATGAAGCGAATGAATTGGATGCGTCGCCTTCCTTGGCTAAAGACTCTGTTTCTGTTGAAGCTTCATCTTGCAAATCCAGGAACAGTAACGAGAGATTTCGACAAGCTAGGTCGTCGAAAGGTTCTGTAAATTCAAAATACAAGCAGGAATTGGAAACTATTGAGAAAGAAATCTTGGAATTTGTGAAAGATGCGTCGAAGTTGGAACTCCAATTTCCGAAGACTTTGAACTCACAGCAACGATTTGATGTGCACTGCATTGCTGAAAAACTGAAACTTGCCCACGAAAGCAAAGGGGAAGGAACAGAGAGACACATTGTGGTCAGAAAAGTCATAGAGCCAACGCCTAAAGGCGAAGAGAAAGACGACGAATTGTTGAGCACTTGCCCTTTGTGCAGGAAGCGAGTACCAAAAACCAATCTTGAACTTCACTCTTTGCGTTGTGAACAAATATTAAAGTCAAAAGCCGCTAAAATGGAGAAAGCAGAGTGTGAGAACTCTTCAGTTCCTCAAGCAGCCTTGAAACCACCTAAAACACAAGCGAAACCCAAACCTTCTGTATCAAAACAGCAAGGAGAAGAAGATTTCGACAAGTTGTTAGCTTCTTTCACCAAACTGGACTCGCAGTGCGCTTATGATGCGTGTAAACAGAGTGTGAGAACTCTGGGACAGACGTGTCAGTGCTGTAAGAAGATTTACTGTTTGTCGCATCATATACCCGAAGTTCATGGCTGCGGAGAAGAAGCCAAGCGCCGGGCCAGGTATCTTGCTAGAAATCCGCCAAGGCCTAAGCCCATGACTTCTGACGCTACTCGGAAAGCGCAGCTTCAGAGAAAACTGGACAAGAAGCTCGATGGATTGTCTGAAAAACGTAAAGCTAAACAAAAAGGAGGAAAGAATAAGTGA

Transcript

amic_s0014.g131.t1

AGAGAGTTCACAGCCAGGTTTACACAAGGGTGAGGATGTTAAAAGTACACTATAACTTCGGATACATGAAGCTATTATTTTGAAATCATACGTTGTTTACGACGCATTTCGTGACCTAACATGGCAGTCGATGTGTCTCAGTTTGTAAAGAATACGCTGTCCCTTCTAACTTTAGAGAGGAATGCCGAAATAGAAGAAACCAAGTCTCTTCATGAAAATATAAGCCCAAAGGAACTTCAGAAAAGAGGTGTTTGTCTCTTGAAACTTCGAATTCGGAGCCGCAGAACTGGTTTATATGGAAGGCACCTTCTGACGTTGGAGCTTTCCAAGGCGACGAGCCCAGATGGAAAACTTCCCTCGCATTCGTTGACACCTGGAGATATAGTGGGTCTAAGCTGGTTGAATGCGGTGGAAAAGCAAAGCGATACTTCCTCAGGAATAATCAGCCGTGTCACTCAAACAGCCATCACCGTAGCATTTGATGAAACTGCTGACAGCCTGGCGTTTGATGATGATGGGCCATTTAAACTTATCAAACTGGCCAATGATGTCACACACAGACGGATCAAAAGTGCTCTTGATGCATTAACCAAATACAGAGATGGGCCAGCTGTGCATTTAATTGATATTTTGTTTGGGAATGTGTGCACTGGTCCTTCCCTACAAATAAGACCTTACACAGATGGAACAGGAGAGACTTGTGATTACTTCAACCCTGACCTTGATAAGTCGCAGAAAGAAGCTGTAAATTTTGCGCTGTGTCAAAGAGAACTAGCCATTGTTCATGGACCCCCAGGAACTGGAAAAACAACCACTGTAGTTGAGATTATCTTGCAAGCAGTCAAGAAACTAAACATGAAGGTTTTGGCCTGTGCACCATCCAATGTTGCAGTTGATAACCTGGTTGAAAAATTGTTGAAAGGAAAAGTCAAGGTTGTTCGACTTGGCCATCCAGCTCGCCTGCTCAGTGTTGTCCAAGAGCATTCACTTGATGCACTGTTGTCTGTTTCTGAGGGAACTGCAATTGTGCGTGATGTGAGAAAAGACATAGATGACACACTGAAAAAAGTTGGAAAATCAAAGAACCCATCTGAAAAGAAACATTTCAAACAAGAAATAAAATCTTTGCGAGAAGAGCTCCGACAAAGAGAGGACAAGGCTATCACAGAAATCCTTACTAAAGCTGATGTTGTCCTTGCGACCAATACCAGTGCGTCAATGGATGGCCCACTTAAACTTATCAAGCGGGACCACTTTGATTTAGTTGTCATTGACGAGGCAGCTCAGTCACTGGAGGCAGCCTGCTGGATACCCTTACTGTGGGCTCCAAGGTGTGTGCTTGCTGGAGATCATCTGCAGTTACCACCCACTATAATCTCAAAGGACGCAGCTAAAAAGGGACTACAAGTCACGCTAATGGAGAGACTCATTAAATTGCTGGGAGATGATGTTGTGCGCATGCTAACTACTCAGTACAGGATGAATGAAGCAATCATGAAGTGGTCTTCAGAAAAACTTTACGAGGGTCGACTTCAAGCGCACGCATCCGTAAAAAATCATCTGTTGAAAGACCTGCCTGGTGTACAGGAAACCGATGAGACGATGCATCCGCTTCTCTTGATTGACACTGCCGGATGTGACGTCAGTGAAAACGAGGTGGAAGATGAGGTCTCCAAAGGGAATAAAGGCGAGGCTGACATTGTTGCTGCACATGTCACTGCACTTATTTCCGCTGGACTTCAGCCATGTGATATCGCTGTCATTGCACCCTACAATCTTCAGGTGGAACTCTTGAGATTGCGCCTATCTTCTCAATACCCAACGCTGGAAATCAAATCTGTGGATGGATTTCAGGGAAGAGAAAAAGAAGCGGTGGTCATTTCACTGGTTCGCTCAAATCCAAAAGGGGAAGTCGGTTTTTTAGCGGAACACAGGCGAATCAACGTGGCTATAACACGCGCTCGGCGCCATCTTGCAGTTGTAGCAGATTCTGAGACCGTTGGCCACGATGACTTTTTAAAATCTCTGATGGATTACATGAGTAGTTATGGAGACGTCCGCACTGCGCATGAGTACGTAGACGATTCGCCACCGAGTCTTGATGCTTCAAACCTCGCTTTTGAGAATGGAGATGCGTTCTTGTCTAAATTTACTAAGACCAACAAGAAGCGGGAAAAGGTGTCAGATGTGAAGAAAACTGATAAGAAAGTGAACAAAGACTTGAGGATTAAACGAAGCGACCGAAGAAACGGGACAAATGACTGTATTGCAGCGAAAGTAAGTAATGAAGCGAATGAATTGGATGCGTCGCCTTCCTTGGCTAAAGACTCTGTTTCTGTTGAAGCTTCATCTTGCAAATCCAGGAACAGTAACGAGAGATTTCGACAAGCTAGGTCGTCGAAAGGTTCTGTAAATTCAAAATACAAGCAGGAATTGGAAACTATTGAGAAAGAAATCTTGGAATTTGTGAAAGATGCGTCGAAGTTGGAACTCCAATTTCCGAAGACTTTGAACTCACAGCAACGATTTGATGTGCACTGCATTGCTGAAAAACTGAAACTTGCCCACGAAAGCAAAGGGGAAGGAACAGAGAGACACATTGTGGTCAGAAAAGTCATAGAGCCAACGCCTAAAGGCGAAGAGAAAGACGACGAATTGTTGAGCACTTGCCCTTTGTGCAGGAAGCGAGTACCAAAAACCAATCTTGAACTTCACTCTTTGCGTTGTGAACAAATATTAAAGTCAAAAGCCGCTAAAATGGAGAAAGCAGAGTGTGAGAACTCTTCAGTTCCTCAAGCAGCCTTGAAACCACCTAAAACACAAGCGAAACCCAAACCTTCTGTATCAAAACAGCAAGGAGAAGAAGATTTCGACAAGTTGTTAGCTTCTTTCACCAAACTGGACTCGCAGTGCGCTTATGATGCGTGTAAACAGAGTGTGAGAACTCTGGGACAGACGTGTCAGTGCTGTAAGAAGATTTACTGTTTGTCGCATCATATACCCGAAGTTCATGGCTGCGGAGAAGAAGCCAAGCGCCGGGCCAGGTATCTTGCTAGAAATCCGCCAAGGCCTAAGCCCATGACTTCTGACGCTACTCGGAAAGCGCAGCTTCAGAGAAAACTGGACAAGAAGCTCGATGGATTGTCTGAAAAACGTAAAGCTAAACAAAAAGGAGGAAAGAATAAGTGAATAACAGTTTGAGCAGTGCTCTCAAACAAAATCCATCGATGCTTCAGTAACTTGAAGTTTAATATGAAATATGAGATTGCAATTTTAGTTCCCCTTTCCCTTGTGAAATTGATAGTCAAAATAGACGCACATTAGAATACAGTTGTAATATAGTGAGGGGGTTGTTAAGAAGGGATAATAAAACGGCCTTGAACTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P38935	DNA-binding protein SMUBP-2 OS=Homo sapiens OX=9606 GN=IGHMBP2 PE=1 SV=3
P40694	DNA-binding protein SMUBP-2 OS=Mus musculus OX=10090 GN=Ighmbp2 PE=1 SV=1
Q60560	DNA-binding protein SMUBP-2 OS=Mesocricetus auratus OX=10036 GN=IGHMBP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01424 all species →	R3H	R3H domain	Domain	Interproscan
PF01428 all species →	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF21138 all species →	SMUBP-2_HCS1_1B	Helicase SMUBP-2/HCS1, 1B domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000058 all species →	Domain	Zinc finger, AN1-type	Interproscan
IPR035896 all species →	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR036867 all species →	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001374 all species →	Domain	R3H domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR004483 all species →	Family	Helicase SMUBP-2/Hcs1-like	Interproscan
IPR048761 all species →	Domain	Helicase SMUBP-2/HCS1, 1B domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19036	IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2	EC:5.6.2.5 EC:5.6.2.3	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.