Gene detail

Detailed information of amic_s0014.g148.t1 in Acropora microphthalma

Genomic Location: sc0000014_pilon:2258627...2270800
NR annotation: XP_029186933.2, beta-hexosaminidase subunit beta-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0014.g148.t1

ATTGATTAAGTCTGTACCAGCACATTAAACATGCGTAAAATACATTGTAAGTGCACAATAATATCTTGGTGGTCCAGATGGGAAAAAACAACTGATAAGAGCGATTGTCCACCCCCTCCTCTTATGTTAAATAATGCTAAAGAAAATAACGCAATCTCGCACGTGACTACTTTATAGATTCTCGTGAAGATCACTTGACAATCAAAAATCGAAACCGTCCCGTTGAGGAAGAAGGTGAAGATCATGGTTCGAGCGATTATCCTTCTGAGCTGCGTTGTGTTCGCTTGCAATGCTGTTCAAAGGTTTCCAAAACTCTCAGACCCCTTCGCTCTAGGTGGTTTAGGATGGGAACTAGAAGAACTCCAAGTTGAAGACTACGTCAAAGGTTCTGTCTGGCCGAAACCACAAGGAGAAACACAAAATGGGAGCGTTTACTCGTTGAGCTCGGAAACGTTCAAATTTAGCATAACTGCGCAAAGCAGCGATGTGCTTGAGGATGCTATAAAGCGTTACAAACAGTTAACGTTTCCTGAAGACTTCCGTGAGATAAAGACAAATTTGCCTCAAATTACGCAACTCACGATCGAAGTGATAGACAAATACGAAAATCTCACTCTGGATTCCGACGAAAGCTATAAATTGACCGTCGTCTCCCCCACGTCATCCCTTATTTCTTACACTGTCTGGGGAGCATTACGAGGGCTTGAGACATTCAGCCAAGTGGTCTATCAGGATCCAAATGGTTATTATCTTGCCAATGGAACACAGATTGACGACTATCCCCGGTTCAAACACAGGGGATTCTTGATTGACACCTCACGGCACTTTGTGAATGTACCTGTAATTCTTAAGTTCTTGGATGCTTTGTCATATAGTAAATTTAATGTTCTTCATTGGCACATTGTGGATTCCCAATCCTTTCCATTTGTGAGTGAGACATTCCCACAGTTGAGTAATAAGGGTGCATGGAATAACAAAACTCATATTTACTCCAAACACGATGTTGCGAAGATCTTAGAGTATGCAAGGTTGAGAGGAATTCGAGTTGTGCCAGAGTTTGACACCCCGGGTCACACTCTCTCTTGGAGGAGTATAACTAATCTGTTGACTCCATGTTACTCAGGGGGAAAACCATCAGGAGCACTTGGTCCTATCAACCCAACAATAGAATCCAATTATGATTTCCTTCAAAAATTTTTCACGGAAGTTGCTGAGAGATTCCCTGACAATTATGTCCATCTTGGTGGTGATGAAGTCCCCTTCAGTTGCTGGCAGAGCAACCCAAACATCACAGCTTGGATGAATATGATGGGATTCAAACAGAACTATTCTCTGCTGGAGCAGTACTATGAGCAAAAACTTCTTAAGATCGTCGGTGACCTCAAAAAACAGTACATCATCTGGCAAGAGGTAGTTGATAATGATGTGCAAGTTGATCCAAAAACTGTTGTTAATGTGTGGAAGAGTGGCTGGCAGAATGAGATGGCTAAAGTGACTGCAAAGGGTTTAAAGACCATTCTGTCATCCTGTTGGTACTTAAACTACATTTCATATGGACAAGACTGGACAAAGTACTACAAGTGTGATCCTACAGATTTCACAGGTACGGATGAGCAAAAGGAGTTGGTCATTGGTGGAACTGGCTGCATGTGGGGAGAATGGGTCGATGGCACAAACCTGCTCACAAGGACCTGGCCTCGTGCATTAGCTGTGGGTGAAAGATTGTGGAGTAGTGAAAGCGTAACAGATCTCACAGATGCAGAGAACAGATTGTGGGAACATCGCTGCCGCTATGTCAGGCGCGGTATTCCAGCCGAGAATGGAATCCAGTCCAAATACTGCCGTTACGAATGGCCAGGCTTCTGAAAGAAAGGCCCATTTTGATCAATGAGTGTCATTTGAATTTATTTTTGTACCGAGGAATCATTCAGTTTTGGTTTTTGTCGCCCGGCGGATAGAACTGTAGTTCAAATTGTTTTTAAGTTAAATTCCGATTTTGTATTTTCCTAGAAATGCATGACCCGTGTAAACAGTGCTTTGTCGCGATATGATCGTCCTTCGTAGGAGAATCGGCTCAGGAGAGTTGCAACCAGTGGCCATAAAAATGAACACCATCTAAACTGCTCCCCAGCTAAAAATATACCATAATAATCGACCTAGAATAAAGTAAACATCCCACACACAGTACCTACTGCAATTAATAAGAATAATCCCTTGATATCTATGGACCATTGCTAAGGTACAAGACTTGAACTTCGTGTCGTGAAAGTTAACCTCGAAATGATGGCTTTTGCCAAACATTATGGGAAAACTTATCCTATTTATTCCTTGTTATTGCAAAACGAAAATTGGGTAAAGGAGGAAAATAAGATGGCAGGCGGGGTTACTTTGCTTCCAGAGCCCTCTGGAGGCTCGCGCCGGCGGCCCACTCTCACGAAGCCTTTGTGTGCGTACCTAAAACAGAAAACCACGCTACGTCCTTGAACTCTACCTTTTTTCATTTTCTTTTTACTTATCTACCAGGCGTTATGTTGAACTACAGCAAGCAGTTTTCTACAGACACCACTATGCACGCAGCGGAGAGCACACTCCTTGCGGCCCCAACTACACACGTACGCACGCGTACTTCTCCTTATACGATTAAGAGGACTCCGTCTCTAATGTCCTTCACTGTTTGGCGGTGTTATCCTGTCGTGCGATGCCTTTAGTTAATAATGTATGTCTAAATATTGATTCAGTTTGGCGCTATTGCGTGGGAAAATGAAATATGGCTAGCCTGGGAAATGAGCCTTAGGGTTTCCTCTGAAGCTAACAACACGTGCTTTTGTTACCACCTCAGACAGTTGCCCGAATCTTCCAATATTTCCAGCTTACTTTTCAAAAATCTAGTTATTTTTTAAAGTCATGTTTACTGATGATGATAACAAATTGTTTTCAAGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49614	Beta-hexosaminidase subunit beta OS=Felis catus OX=9685 GN=HEXB PE=2 SV=2
P07686	Beta-hexosaminidase subunit beta OS=Homo sapiens OX=9606 GN=HEXB PE=1 SV=4
P20060	Beta-hexosaminidase subunit beta OS=Mus musculus OX=10090 GN=Hexb PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001007 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF14845 all species →	Glycohydro_20b2	beta-acetyl hexosaminidase like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR025705 all species →	Family	Beta-hexosaminidase	Interproscan
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR029018 all species →	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan
IPR029019 all species →	Domain	Beta-hexosaminidase, eukaryotic type, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600 all species →	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004563 all species →	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0006689 all species →	Biological Process	ganglioside catabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030203 all species →	Biological Process	glycosaminoglycan metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12373	HEXA_B; hexosaminidase	EC:3.2.1.52	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.