Gene detail

Detailed information of amic_s0014.g170.t1 in Acropora microphthalma

Genomic Location: sc0000014_pilon:2608577...2616909
NR annotation: XP_015759618.1, PREDICTED: uncharacterized protein LOC107338878 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0014.g170.t1

ATGATTGGAGAGTTGAAAGTTGGTGCCCGTGCATCTTTAGAAGATGATGGAATTAGATATTTGGATTATCAGCTGAAAGCTGACTTAAACCGTGACTATCCAGACTGGCAATTGCCAAGTCAAACATGGATGGTTCCAAATGTCTTTGAAATGAAAGGAGGTAGAGATAAAAAGGGGCAACTTGCAGAGGAAAAAATTTTTAACCTTCTTCATGACTTTGGAAACAATTGCAAAGAACCAATGTTTGTTGTGCATTCGTACAAATTTAGGGAGAAAATTGAAAATTGGCAAAACCTAAAATTTGATGAAAAGAAATATGTAATAGGAGAACATGATTTTGTGCTCATTCACAGGAACCATGGAGTCATATTTCTTCAAGTAAAGTCGAGCACAAAATGTAAGTCATTTGGAGAAGCCAATTCTCAATTGGAAAAAGACAAAAAGTCAATAAAGGTTTTTGCACAGGAAAACTTGAAGGGTGAGCTGCAGAAAAAAATGAATAAGGAATTGCATGGTGAACAGCATGCATATGTTGTGATGCCAGAGCTCGAGCGAGGTAACTCACCTCATGGGTCAAATGGAATATTCAAGGAAGATTGTGAAAGTGTTGGGGCATTTTCAAAGTGGTGGAAGGATAACATTCTACCAAGGACACATCCTGATCAGGAAGTATATGACTGCCTGGTGATGCGCTTTGTTGGGCTGGTTCATGGTACCCCTTACCCTTTAAGCTCCTCCATTGAGAGAAGCAATAAAGTGCTGGTGTGGAAAACAGCTGAGCAGTTGAAGGTCCTTCTTGGTTCACCAGAAGAGGCGTGGATCACAGGCCCAGCAGGAAGTGGCAAGACCTGGATTCTAATAGAGAAGGTGAAAGAACTTGGTGCAAGACAGAGAAAAGAAAGGATCCTTGTAGTTTGCTTCAACAAACCCCTCTCCAAGATGTTAAAGCAACAATTCAAAGATTTCAGGCGTGTGGTAATAGTTGTAAGATTTCAACAACTTCTCAAAGTAATTACTGGAAAAAGTTTTCATTCTGAACTAGAGAGAGAAGAAAACATCAATCTTGCTGTGAGGATTTTGGAGGGGAAGACACCCAAATTTGATCATATTTTTGTCGATGAGTGCCAGGATTTGATTGGTGACCAGTGGCCAGTTATTTTCCAAAAATTGTGGAAAGGCAATGACGATGATTCTGGGACCACAGAAGTCACTGGATACAAATACAAATGGTTCTTTTATGACACCAACCAATATGTGGGATGGTCAGGTGAGCGCTTCGAGAAACACAAGAAGGCCCTTAAAGATAGTTTCAAACTCGGCTATGTGCTTAGAAATACTGGCAACATCTTTGAACAGTCAAAAAAGTATTTACAACCCAGCTCTTACTGCCCTAAAGAAATCACACTGGGACACGAGGTACGCGGCTTGAATATTAAATGGGAAGCCTCCTTAGATGGATGGGTCGAAATTGGAGCACAATTAGTGGCTAAGTGCATTGCTGATCTCAGAAAGAAGAAAGTCTTAGAGGCAGATATATGTGTCTTGGTGCAGTGTGTAAAGTTAAGAGACCGCCTCAGCGCTGCGCTCAAAGAGCTACATGTGGACAACCACAATGCAGAGGAGCAGTTTGAAAGGAAGAAGAAGATGGTTGTGGTTGACAGTATCAGGCGGTTCAAAGGGCTAGAATCCAAAGTTGTAATTCTGTATAACCCTGACTTCACTGATAAATACAACAAGCACATCAGGGAACTGCTCTACACAGCAATTTCGAGATGTTCATGTTACTTAGTCATTATCACCAGCGAGGAAGGGCGGGATGCATTACAATCAGTCGATGGTGTCGAAGTAAAAGATGGAAAAAAACatgatgatgatggtgatgatgattctgattctgtttctgattctgatgttgagatggatgatgaggatgaccatgatgatgatgataaggatAGCGATGGCAGCGCACTTGAAATGGAGACGGAGGACAGTTTCAGAGATGAGGGATGTGACTCTTTAAAAGTTTCACAACAATAA

Transcript

amic_s0014.g170.t1

CAAGAGGGTTTATCCGGGACAAAAGACATTTGGGAAGGCACAGAAGCAATGATTGGAGAGTTGAAAGTTGGTGCCCGTGCATCTTTAGAAGATGATGGAATTAGATATTTGGATTATCAGCTGAAAGCTGACTTAAACCGTGACTATCCAGACTGGCAATTGCCAAGTCAAACATGGATGGTTCCAAATGTCTTTGAAATGAAAGGAGGTAGAGATAAAAAGGGGCAACTTGCAGAGGAAAAAATTTTTAACCTTCTTCATGACTTTGGAAACAATTGCAAAGAACCAATGTTTGTTGTGCATTCGTACAAATTTAGGGAGAAAATTGAAAATTGGCAAAACCTAAAATTTGATGAAAAGAAATATGTAATAGGAGAACATGATTTTGTGCTCATTCACAGGAACCATGGAGTCATATTTCTTCAAGTAAAGTCGAGCACAAAATGTAAGTCATTTGGAGAAGCCAATTCTCAATTGGAAAAAGACAAAAAGTCAATAAAGGTTTTTGCACAGGAAAACTTGAAGGGTGAGCTGCAGAAAAAAATGAATAAGGAATTGCATGGTGAACAGCATGCATATGTTGTGATGCCAGAGCTCGAGCGAGGTAACTCACCTCATGGGTCAAATGGAATATTCAAGGAAGATTGTGAAAGTGTTGGGGCATTTTCAAAGTGGTGGAAGGATAACATTCTACCAAGGACACATCCTGATCAGGAAGTATATGACTGCCTGGTGATGCGCTTTGTTGGGCTGGTTCATGGTACCCCTTACCCTTTAAGCTCCTCCATTGAGAGAAGCAATAAAGTGCTGGTGTGGAAAACAGCTGAGCAGTTGAAGGTCCTTCTTGGTTCACCAGAAGAGGCGTGGATCACAGGCCCAGCAGGAAGTGGCAAGACCTGGATTCTAATAGAGAAGGTGAAAGAACTTGGTGCAAGACAGAGAAAAGAAAGGATCCTTGTAGTTTGCTTCAACAAACCCCTCTCCAAGATGTTAAAGCAACAATTCAAAGATTTCAGGCGTGTGGTAATAGTTGTAAGATTTCAACAACTTCTCAAAGTAATTACTGGAAAAAGTTTTCATTCTGAACTAGAGAGAGAAGAAAACATCAATCTTGCTGTGAGGATTTTGGAGGGGAAGACACCCAAATTTGATCATATTTTTGTCGATGAGTGCCAGGATTTGATTGGTGACCAGTGGCCAGTTATTTTCCAAAAATTGTGGAAAGGCAATGACGATGATTCTGGGACCACAGAAGTCACTGGATACAAATACAAATGGTTCTTTTATGACACCAACCAATATGTGGGATGGTCAGGTGAGCGCTTCGAGAAACACAAGAAGGCCCTTAAAGATAGTTTCAAACTCGGCTATGTGCTTAGAAATACTGGCAACATCTTTGAACAGTCAAAAAAGTATTTACAACCCAGCTCTTACTGCCCTAAAGAAATCACACTGGGACACGAGGTACGCGGCTTGAATATTAAATGGGAAGCCTCCTTAGATGGATGGGTCGAAATTGGAGCACAATTAGTGGCTAAGTGCATTGCTGATCTCAGAAAGAAGAAAGTCTTAGAGGCAGATATATGTGTCTTGGTGCAGTGTGTAAAGTTAAGAGACCGCCTCAGCGCTGCGCTCAAAGAGCTACATGTGGACAACCACAATGCAGAGGAGCAGTTTGAAAGGAAGAAGAAGATGGTTGTGGTTGACAGTATCAGGCGGTTCAAAGGGCTAGAATCCAAAGTTGTAATTCTGTATAACCCTGACTTCACTGATAAATACAACAAGCACATCAGGGAACTGCTCTACACAGCAATTTCGAGATGTTCATGTTACTTAGTCATTATCACCAGCGAGGAAGGGCGGGATGCATTACAATCAGTCGATGGTGTCGAAGTAAAAGATGGAAAAAAACatgatgatgatggtgatgatgattctgattctgtttctgattctgatgttgagatggatgatgaggatgaccatgatgatgatgataaggatAGCGATGGCAGCGCACTTGAAATGGAGACGGAGGACAGTTTCAGAGATGAGGGATGTGACTCTTTAAAAGTTTCACAACAATAATGAAAGACATGATTACCAGAAAAAAAAGTGTAGTTTGAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002781 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13538 all species →	UvrD_C_2	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027785 all species →	Domain	UvrD-like helicase C-terminal domain	Interproscan
IPR000212 all species →	Family	DNA helicase, UvrD/REP type	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070 all species →	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0014.g170.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.