Gene detail

Detailed information of amic_s0014.g171.t3 in Acropora microphthalma

Genomic Location: sc0000014_pilon:2623190...2634992
NR annotation: XP_029194659.2, LOW QUALITY PROTEIN: unconventional myosin-VIIa-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0014.g171.t3

ATGGAAAATCATTCCTCAGATGCGCTTAATGAAACATTGTCTGAAGTCCCACTGCCATACGCAtgccttgcgtggctcccagttcttggcctcgtggctgctgtgacagtagcaatcaacgctctcgccattattgtttacctgaaagaacagaatctacgcaagcgtaccatgtacttaataatgagccaggcacttgcagacatgtgtgttggaggaatctcgttacccattgatgtttccaattcgggcttttattgccgcctttggaagatcaacccttccccaaaggggatctggccaagtattttgattgcagtacttttcgtctttaatatggcttcagtgataaaccttgccgccatttctttggaacggacgcacgccacgtttcgaccgttgcagcatcgtgctgtcaagaagtggatctttaaagctgctaccgcagcagtttggattaccgctgtcctaagcgcatcttacatctacttggatttattctttgcattaaccggtcgcggcaagttttactcgtatttgtcaatattatcgtgttgtttctttattatcgtcgtttcctatacatcgatcgttgtcaaaacgtacggcggaaagcgtcttgaacgccacggtgcagtaaaccgagaaatgaagctcacaaaaacactgtttattgtgacagttgtatcctcggcgttgttgttaccatacattatttcctttttcctgatattttccaaacgaccgttttatgccttctccaatcaaaccctccatttgcgtttcttttttgttactttagcttattccaactctatggtcaatccaattttgtatgctctcagaattccagagttcaaaaaagctctgTCGAAATTTTTAGCCAGGATCCTCGACAAGAACAGAGATACCTTCAGTGCTGATCTTGTGGGGCTTGTCTGTGAGAGTAACATGGATTTTCTTTTCGACTTGTTCGCCAAAGAAATGTCAATGGGGGACGAAACTAGGAAGCGCTCTCCCACATTGAGTGCACAGTTCAGAAGATCCCTGGACATTTTAATGAAGATGCTCTTGGGCTGTGAGCCTTCGTTTGTTCGTTGCGTGAAGCCCAATGATTTGAAAAAGCCTATGATATTTGATCGTTACCTTTGTTGGCAGCAGCTAAAATACTCTGGAATGTTGGAGACAGTGAAAATTCGGAAAGCTGGTTTTTCTATTCGTTATACTTTTGAAGAATTTGTGAATAGATATCGCGTTGTTATGACGGATTTGAGGATTCCGGATAGTGAACTTCGAGAGATGTCCGAGGAGCTTGCCAAAAGTCTTTTTAGAGATGTTGAATGGACTATTGGTAACAGAATGATATTTTTGAAGGATCACCATGGTGACATTCTAGAGACAGCACGTGATGCCTTGCTGACCAATGCGGTAATTGTTCTTCAGCGGTCCATGAAGAGGTTTTTATGTCGTAGAAAACATCACAAACAGACATGCGCAGCTGTAATCATCCAAAAGTCCTGGAAATGTTATCGCGAGCAGAGAATTTACCACAAGATCTTAAAGGGAGTCACAAGGCTACAAGCCACTTGGAAAACTCGTCAGTTGTCCCTTAAGTTTAAGCGCTTCTTTGAGGATAAGCGAAGGACACAGCAGGAAAGACTGCAACTACTGGAAAACGagaaacagcagaaagagaaggaagagaaagaacaacgagagcaacagaaacaacaagaaaatgaAGCCAAACTGAAAAAGGCACAAGAGGCTGCAGCAACGCAAATTCGAGAGACGTTTAGTTTTATAACGAAAGAAGACAAACCTTTTGCTCAAGAAGCAGGGGAGACAATTGCAAAACAAGCGAATTCCACTTCGCCAGTACGTGGAGAGCGCGTGAGACCACGAAACGCCTCTTCAGTATACCAAGCTGGAGCAAGCCTTGTTGATGGAGCCCATCGTCCCAATGTGCTTAGCGGGCTTCACCACGCTACACCGTCACGTTCTTCAGAATTGGCATTGACTTTAACAGCACTTGTTCTCGGATTGGCATGTCAGGGATCCTCCAATGAAAACCAGGCGTCGTCTTCACGTGATGATGAACCGAAGCCAAGGCAGCCGACATTTGTGTCCCCCTTGAGAACGAAGCCCAAGGGCCCACAAGGATCCCTTAGATGGCGCTCTAGCCGATCGGATGAGTATGACCAATCCTAG

Transcript

amic_s0014.g171.t3

CATTGAAAGTTTCTCTCCAGCGGACCAACTTTCACCGTTAAAGACGCGATCCTCTCCCACGATTTCCGTGTTGAGTTTTGTCGCACCACTTGACAGCAACGCTACATCGAGGTTACACGATAAAATGGAAAATCATTCCTCAGATGCGCTTAATGAAACATTGTCTGAAGTCCCACTGCCATACGCAtgccttgcgtggctcccagttcttggcctcgtggctgctgtgacagtagcaatcaacgctctcgccattattgtttacctgaaagaacagaatctacgcaagcgtaccatgtacttaataatgagccaggcacttgcagacatgtgtgttggaggaatctcgttacccattgatgtttccaattcgggcttttattgccgcctttggaagatcaacccttccccaaaggggatctggccaagtattttgattgcagtacttttcgtctttaatatggcttcagtgataaaccttgccgccatttctttggaacggacgcacgccacgtttcgaccgttgcagcatcgtgctgtcaagaagtggatctttaaagctgctaccgcagcagtttggattaccgctgtcctaagcgcatcttacatctacttggatttattctttgcattaaccggtcgcggcaagttttactcgtatttgtcaatattatcgtgttgtttctttattatcgtcgtttcctatacatcgatcgttgtcaaaacgtacggcggaaagcgtcttgaacgccacggtgcagtaaaccgagaaatgaagctcacaaaaacactgtttattgtgacagttgtatcctcggcgttgttgttaccatacattatttcctttttcctgatattttccaaacgaccgttttatgccttctccaatcaaaccctccatttgcgtttcttttttgttactttagcttattccaactctatggtcaatccaattttgtatgctctcagaattccagagttcaaaaaagctctgTCGAAATTTTTAGCCAGGATCCTCGACAAGAACAGAGATACCTTCAGTGCTGATCTTGTGGGGCTTGTCTGTGAGAGTAACATGGATTTTCTTTTCGACTTGTTCGCCAAAGAAATGTCAATGGGGGACGAAACTAGGAAGCGCTCTCCCACATTGAGTGCACAGTTCAGAAGATCCCTGGACATTTTAATGAAGATGCTCTTGGGCTGTGAGCCTTCGTTTGTTCGTTGCGTGAAGCCCAATGATTTGAAAAAGCCTATGATATTTGATCGTTACCTTTGTTGGCAGCAGCTAAAATACTCTGGAATGTTGGAGACAGTGAAAATTCGGAAAGCTGGTTTTTCTATTCGTTATACTTTTGAAGAATTTGTGAATAGATATCGCGTTGTTATGACGGATTTGAGGATTCCGGATAGTGAACTTCGAGAGATGTCCGAGGAGCTTGCCAAAAGTCTTTTTAGAGATGTTGAATGGACTATTGGTAACAGAATGATATTTTTGAAGGATCACCATGGTGACATTCTAGAGACAGCACGTGATGCCTTGCTGACCAATGCGGTAATTGTTCTTCAGCGGTCCATGAAGAGGTTTTTATGTCGTAGAAAACATCACAAACAGACATGCGCAGCTGTAATCATCCAAAAGTCCTGGAAATGTTATCGCGAGCAGAGAATTTACCACAAGATCTTAAAGGGAGTCACAAGGCTACAAGCCACTTGGAAAACTCGTCAGTTGTCCCTTAAGTTTAAGCGCTTCTTTGAGGATAAGCGAAGGACACAGCAGGAAAGACTGCAACTACTGGAAAACGagaaacagcagaaagagaaggaagagaaagaacaacgagagcaacagaaacaacaagaaaatgaAGCCAAACTGAAAAAGGCACAAGAGGCTGCAGCAACGCAAATTCGAGAGACGTTTAGTTTTATAACGAAAGAAGACAAACCTTTTGCTCAAGAAGCAGGGGAGACAATTGCAAAACAAGCGAATTCCACTTCGCCAGTACGTGGAGAGCGCGTGAGACCACGAAACGCCTCTTCAGTATACCAAGCTGGAGCAAGCCTTGTTGATGGAGCCCATCGTCCCAATGTGCTTAGCGGGCTTCACCACGCTACACCGTCACGTTCTTCAGAATTGGCATTGACTTTAACAGCACTTGTTCTCGGATTGGCATGTCAGGGATCCTCCAATGAAAACCAGGCGTCGTCTTCACGTGATGATGAACCGAAGCCAAGGCAGCCGACATTTGTGTCCCCCTTGAGAACGAAGCCCAAGGGCCCACAAGGATCCCTTAGATGGCGCTCTAGCCGATCGGATGAGTATGACCAATCCTAGATGACGGCTAAACCACGAAGAAAGAATACTCAAGATTGGTCAGCAAAGAACAAGCTGAAATATCAATATCCAGTGGCCTAGCAGGGATTAAAGTTCTGAAGAAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29P71	Myosin-VIIa OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=ck PE=3 SV=1
Q13402	Unconventional myosin-VIIa OS=Homo sapiens OX=9606 GN=MYO7A PE=1 SV=2
P97479	Unconventional myosin-VIIa OS=Mus musculus OX=10090 GN=Myo7a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000878 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051724 all species →	Family	Actin-based Motor Myosin	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46049 all species →	AGAP003327-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0014.g171.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.