Detailed information of amic_s0014.g29.t1 in Acropora microphthalma

Genomic Location: sc0000014_pilon:384687...503190
NR annotation: XP_044175116.1, LOW QUALITY PROTEIN: MAM and LDL-receptor class A domain-containing protein 2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B3EWZ6MAM and LDL-receptor class A domain-containing protein 2 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWZ5MAM and LDL-receptor class A domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q5VYJ5MAM and LDL-receptor class A domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MALRD1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000729 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00088
all species →		TrefoilTrefoil (P-type) domainDomainInterproscan
PF00040
all species →		fn2Fibronectin type II domainDomainInterproscan
PF00629
all species →		MAMMAM domain, meprin/A5/muDomainInterproscan
PF00057
all species →		Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000998
all species →		DomainMAM domainInterproscan
IPR002172
all species →		RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR036055
all species →		Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR023415
all species →		Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR000562
all species →		DomainFibronectin type II domainInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR000519
all species →		DomainP-type trefoil domainInterproscan
IPR013806
all species →		Homologous_superfamilyKringle-like foldInterproscan
IPR017957
all species →		Conserved_siteP-type trefoil, conserved siteInterproscan
IPR051560
all species →		FamilyMAM domain-containing proteinInterproscan
IPR044913
all species →		Homologous_superfamilyP-type trefoil domain superfamilyInterproscan
IPR036943
all species →		Homologous_superfamilyFibronectin type II domain superfamilyInterproscan
IPR035992
all species →		Homologous_superfamilyRicin B-like lectinsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23282
all species →		APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0014.g29.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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