Gene detail

Detailed information of amic_s0015.g102.t1 in Acropora microphthalma

Genomic Location: sc0000015_pilon:1670845...1673595
NR annotation: XP_029188470.1, early growth response protein 1-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0015.g102.t1

CAAAGCTCTACGAAGCAAAGGAGTGAATCCCGACGGAAAACACCGAACCAACCGAAGCTTAAGCGAGTCGTTGTTATTGCTGGCCAATAACTCGACTATACCGATAACTGTTGATCAGTTTTACAACACACAAAACAAAAAATCCCGAAGAATTTCAATCGTTTGGAGAGCCGAAAGTTGAACAAATATACCATGATGATTACCATGACTGAAGCTTTGGATAGTCTTGCTCAAGTTGCCACCGATCAGCTTTTTGGTTTCGACACAGCCAGTCTTTTGACGCCTCAGTTAGCCCGCCAAGTCCCTCAACTGAATGCCGAAGACTTTTCATTCGTTCAGGCTGGCATGGATGAACCAACCAACATTTTTGGTGAGCCGGTTGATTTCCACGGCCCTTCTTCTGTTCCAGGAGATCTTGACTTGGATTACACTGTTCCGGACGTCAAACAAGAGGGTGCCAACCATAACATTAAAGCATGTCAGCAACGACTGGCACATTTCAAGGTTCCAAGTCTACATGATGTTATATCTGGTCCTTCTGGCTCAACTCCTCCACCTAACGGACAGGGGTCTCCCTATAGTTCACCAGCACACAATCTTTGGATTCCCGACCGCACAATTCTCACACCTTTAGCTGGAACAACACCTTGGAGTTCATTCTTCCAAGATCCAAAACTTCCAATGCCACTTGAAACCAGTACAGGGCCAAGCAAGGTATTGACACCCACTCCACAAGATCTCCAACAAGAGCAGGTTCCTGTCTCCTCTAGCAACAACCTCTCTGGGATGGCTAAACTCCCATCACAGGGAAATATGTACCAGCGACCCATGCAGCAGCAAGTGAGCTCATCATCACCAATGTTTATGCAAGCTACAGCTACTCTGAACATGAAGTGGCCAATCATCAGTGGCCCTTCTTTTCCTACTCCCATGTCCCCTGACACAATGATGGACAAGTTGCTCTTGCAGACAGCATCTCAGCCAGATTTCCTTGCCACACCAAGTAAGCCTGTACAGAGAGGTCGCCCTGCAAAAGCAGGTAATGCTTTACTAAAAGCAAAGCGTACCAATCCCACTGATGGCCGCTCAAGGACACCACCAAGTGAGAGACCTTATGCTTGCCCAGTTGAAACCTGCCCAAGGAGGTTTTCAAGGTCTGATGAACTGACCAGGCACATGCGAACCCATACTGGACAGAAACCATTCCAGTGCCGAATTTGCATGAGGAACTTCTCGCGCTCAGACCATTTGACCACCCACATCCGCACCCATACAGGAGAAAAGCCATTTGCCTGTGAAACCTGTGGCCGGCGATTTGCACGATCTGATGAACGCCGGCGCCACATGAAAATCCACCTGAGAGAACAAGCAAAGAAAGAGGAGGAGGCAAGAAAAGCTGTGGCCTCTCAATCCAATGGAACTGTTTCACCCATTCACTGCAGGTCTCCTCAGTCCACACCCTCACCTATTCAGGTCCCAGTGACCTCGGTGAATTCTTTCTAAGAAGCTTCTTGCAAACGGCGCTGGCGCTGTAAGAACATTTTGATCTTGAAGAACACTACTTTGTTGACAATTTGTTAATATTTAACAAGAATTTTTAAAGAAGGCTGGTCCTCTGTAAATACTTTTGTTGACAAAATTTGTTTCAAGGTACTGCAAGTACCCCAAATTTGTCCACCAAGGACTTATGTTCCACATATAGAAGGCATGAATACAGCTGGTTTCTGTGTTTCTATGGCTTCTATTATTTTTCATAAAGAAAATAGATTTCAGTTCTAGCAAAATGACAGTCAGTGTTTTACAGTGCAGTGCACATTGGTGTGTCCAGGAAAAATCTTGTTATTTAAGTTCATAATATTCAGAATTAGGCTGGTCCTAATGTACATATTTTGTCAGAGACATTTTAAGGCACGGACAGTGTCCAAATGGTACTAGGGACCTATTTTTCATACATTGAAGAAAATAATACAGGAGGTTTCTGTATTCAACTTAAGTGTTAAGATATTTTACATTTAGATATATAGTGTTTTTGTCAGATTGTTCTCCTTGGTACATAAGGTGTGAAAATTAGTGTTATGATTATCACAATAATAATTATTAATGTCATTAGCAGGGCTGTTTTCATCATTAATTTACAGATTCATAGCTAATTAGTTCTTTTTTTTAATTTGTAACTACACAAGGGTTAAACCCAGTTGTACAAACATTTAAAGATTTATGCCCATTTGTCAAGGAGAATAATTTTTTTCAAATTTCAGAGAGTATTACAACCAAAGTTAAAGTCAAGCTGGTCATTGACTATATAATTGCAGTGCTGGTCACTAAAATGATAAAAATAAAGCTGAAAATTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4II20	Early growth response protein 1 OS=Xenopus tropicalis OX=8364 GN=egr1 PE=2 SV=2
P26632	Early growth response protein 1 OS=Danio rerio OX=7955 GN=egr1 PE=2 SV=2
Q6NTY6	Early growth response protein 1-B OS=Xenopus laevis OX=8355 GN=egr1-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006020 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235 all species →	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09203	EGR1; early growth response protein 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.