Gene detail

Detailed information of amic_s0015.g64.t1 in Acropora microphthalma

Genomic Location: sc0000015_pilon:1032762...1036086
NR annotation: XP_015762603.1, PREDICTED: ELAV-like protein 1-B [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0015.g64.t1

CGCCATTTTGTCTTTCCATGCGGTTCGATAAAAGCTCCACGATCGATTTTGTTGATTTTATTCAGATGAAAAGTCTTTAACAGAAAGAAAATAATTAAAGCCAAAAGTCCCAGAAATCATTTTTCTGCTGCTTTCCTAAGGTACCTCTAACGGATCAAGTAAACCAAAATATTTGTATCTCTTGCTTAAAATTTATTTCTACTATGGCAGAAGAAGGATCCAACGCTGCTGAGCCCGAAAACAAGACCAACTTGATAATCAACTACTTGCCGCAGACCTTGACTGATTTAGAATTCAAGGCTCTCTTTCAGTCAATTGGCCCCACAAAGTCATGCAAAGTTTGCAGACACAGGTCAACCGGATACAGCTATGGCTTTGGCTTTGTGGAATATTTTACACCTGAGCATGCTCAGTTGGCTATTGATACCCTCAATGGTCACCAACTTCAAAATAAGTTCATTAAGGTGGCTTTGTCAAGGAAAGGAGGCGATAGAAACAAAGGAGCAAACTTGTACATTCGCAATATTCCAAAAACATGGACATCTGAGGATCTGAGGGAGCTTTTCAAGCCTTATGGTAACATTATTAACAGCAAGGTTCTGACAGAGCCAATGTCAGGTTCCTCAAAAGGTGTTGGGTTTATTCTGTATGATCTGAAAACTGAAGCTGAAGCAGCTATTGCTGCAGTGAATAATACCATTCCTACAGGATCCTCTGAGATAATGTATGTTCGTTTTGCTGATGACAACGTAACCAAAGTGAAGCCTCCACCAGGGGCTACAACACCTGAAGTCCCTCAGCGACCAAGTTTCAATCTTGGCCAACAACAACATCACCAAGGTGCGATAGGCCCCATGGGACAAGCACTAATAAATCGTCGTGCCAACCGATTCAATCCAATGTTTGCCGGACCCCAAATTCCACCACCATCATCGGGCTTCAACCAGATGCCAAATTCTGGTGCAAATGGTGCAGGCTTCACACTGTTTGTTTACAACATCGGAGCTAGTGCAACTCAAGCTTCAGTTTATAAACTCTTTTCACCATACGGTGAGGTAACAAAGATTAACGTCATGTGGGATTGGGAAAAGGGGCAGTGCAAAGGATTTTGTTTTGTTACCATGGCTACCTGGCAGCAAGCACAAGATGCCATTCGAGCATTAAATGGATATATTTATGACCAATATCCACTGCAAGTTAAGCTGAAAACCTAACAAGGGTACAAACTATGAACGTGTTCAATATCTTGGGCCACTTACTTTTGTGCATCATTGTGATAAAAGTTATCTTATTTTTTAGATGATAGTTTCCAGTGGAATTGAAGGTTGTGGTTTCCATGTAGATCGTTGGTGCTTTTGTTTTTGTAGTGGTTCAAATCGTTTGAAGTTGAACTACTGCAGTTTTCACAAATTATTCCACAGTTTGTTTTTTTTTCGCTGTTGTCGGAAAAAAAAAACAAAACGAAACAAAGCAGGATTCCCGATACCAGTTAGTTTGTTACATTCTACCTCTTCATGAAACGTTTTGCATGAAATGATCATGCTGTTTGCTTAGAATAAGAACTTCTTTCCAGTGTATTAATTTAATGTTCCTCTGCTTTGAAATGGATATTAATTTCTGAATTTTGGCAATTTGAGGGATCATGACCGTTACACATGGAAATGAGGTGTTTGCAAAGGAAGCCTTAAAGATTGAATGACACCTTATTCATTAACTTATATTACAATGTGCATTATCTTCAATCTGGTTCCGTGGATAGTGAATATAACAACGACACAAGATGATCATTTTCTAAACTACAGATGGTAATAAAAGCAGTTTTTAATAATGTTGATGTTAAAATTTAAAAGTACATTATTCCAAAGCAATGATCATTCCAGAAGGACAATGAAATAAATCCAAACTCTTCAGACCACAATATTGTTTTCCTTTGGACTTTACTTATTCTCAAGATGAGTGTGGAGGTTTGGACATAGTTATTATGTATATGCACAATGTAAGAAATGATTGTCATTTGACATGTTTTAGGTAGTACTGACAGCAAAACACAATGGATCTTGTAAACTATTCAGCCAACAGCAGTTTCATGAACAATTTATGCAGTTTAACAATAAAAATTATTTGCCTTTTCAGCAGAAGGGAAAAGTAAAAACAATGTCATCCTTCAACACTAAATTTCAAATCATGGTCTTTCCGTTCAATGTCTTGCATAGCTTTAGGCTGGAAAATTTCAATGCCTTTGGGTAGAAATGGCATAACAGTACTTTATGGAGGTTGTATTCTCTTGCATTGACAATGATTAGGTAGAGATTATCTTCagtgttctccctttttatcagcacaacagataaagcacttttcaaactggtagagcacttgtgggcatcacttattatgcctgcgcatagcattatatggaataggaataatttgcctcatttcagttcactttatacagatggttttgccttacttctttacaaatcagagattggtaacacgaatgtacagaatttcttttttcttataccagttaaattctcaacaattccaggccataaattattaggcagtaataataatttattgatgttagagacaaaaattgtactgatgactgcttcaaaaggagaacacCTGTCTGTGTGTTTTGTTGTTCTTAGGGTTATTTCTGTTGGAGGAATTACCAAATTTTCAGAAAAAAAGAACCACAAATGCAACAAGTCTTGTGATTGAAACAATCCCAATAAGAAAACCTACAATTCCCTTGTTCCTTGGATAGTTTTGTTCTCTATCAGAAAAAAAAAATTTTTCCTACACTTCGATATCTAAAGTATCATTAAGTTTAAGATTTTATTCTCAAAAGACCCATGAAAACTGCAAAGCATTTTTCAAAGTCATGAAGATAAGAGAAATTATTGGGGATGATGAGACAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14576	ELAV-like protein 3 OS=Homo sapiens OX=9606 GN=ELAVL3 PE=1 SV=3
Q91584	ELAV-like protein 3 OS=Xenopus laevis OX=8355 GN=elavl3 PE=2 SV=1
Q28GD4	ELAV-like protein 2 OS=Xenopus tropicalis OX=8364 GN=elavl2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001601 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002343 all species →	Family	Paraneoplastic encephalomyelitis antigen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10352 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13208	ELAVL2_3_4; ELAV like protein 2/3/4	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.