Gene detail

Detailed information of amic_s0015.g75.t1 in Acropora microphthalma

Genomic Location: sc0000015_pilon:1168479...1186561
NR annotation: XP_029200438.1, CCR4-NOT transcription complex subunit 2-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0015.g75.t1

ATGGCTCATCATCGCCCTTTGGGTGATCCATTACCTGGAATAAACCAGTATACATTTCCTCCTCGAAAAGGACAGCAGGACTTATCTCCAGGTGGTAGAAAAAACATGGCAGCAATCGGTTCCATGAGAAAAAAGCTATCTGGCTTTAGTGAAGAGGGTGATGATGATTATGGATCTGCTGGGATGTATTTCAACCCTTCTATGTTTCCTCCACACCGATCAGACAAGGAGGCTCATCTTGGAGGTCTATATGGTACACCATCAGGGATGCAGTCACCAGGACCCCATCAGTCGAATTTCTACAGCTCAGGTCTCCCTAGTTCAGGCCTTCCTCCAAGTGTTAATTCTATGCAAGTTCCACCAAATACTCCCAGGGGAATGTCATCTGCACAGTTTGGTAGAAGTCTGTCACATCCTGGACCCACCCATTCCACATCGACAATGTCAGGTAGCATAACAACTCCAGGGGTACCAAGTGTTCATAACATGGGAGGATTACAGGGTGGAAACCTGTCTTCACAGTCAGCAAGTCGTGGAATTTTATCCATGGGTCCAAGAGGTGTGATGGGGCAAATGCCTCCTGGTTCAGGCCATCTGGGAAGCCAAAGTGGGCTCAACAATCTGCCAAAGACCAGTAGAGCAATATCTCTGCCATCGTCATTATCAAGTGGCACATCCAGAAGTTCTCCTATTCCCACTATTGGAATGACACTGTCACAGGCACCCCAGCAGCAACAAACGCATCAAGCAAGAGACTTTAACCTTGGGGGTTCTAGCACAAGTTCTGTGACTGGTGCCATGTCAAGTTTTGGTCTGTCAAGAAGTCAGTCTACTAGTGGATCCTCCCAGGGTATGAGTGGTCCTAGCCTTCCTCTATTCTCTGGAACATTTGCACCTCCTGGTGCTCCAGATTCACCAAAATCTCTTCGGCATATTTTCTCTGGAGCAGGGCAAGGTCTTTCGGATGCTCAAGGTAATAACTCTGTTGGCTTAGACCTCTCTGAGTTTCCTGCTCTGGCAAACCGAAGCCGCCTCGAGAGCCTGAGTCGTGTTGAAGGTGTGCCGCGACTGGAGAGTATAGGAGGTGTAAGTGCACCCCCTGGCAGCATACCTAGCAGGCCTAGCTATGGTGTGGTATCGAAGCCCGCGGAGCCTCAACCGGATTTCTCCATCCACAATGAAGATTTTCCAGCACTCCCTGGTTCAAGTAATTTCAAGTCAGAAAACAACACAGAAAGTTCCACATCTCAGGATCCTTCCAAACAACAGGCCATGAGTACAAGTTCAAGTGTATTTCCTGGAACAGATCTTCGTGGTGGAGCCTCTTATGAACAAGCTTTAAAGGATGTGGCTAAGGATGCGAGATTTATAGCGGGAGAGTCGAAATCGAACTCGTCAAATCACAAACAACCGCTGAGAGGAATCCAGACATCACCATCAGGTATGATCTCCAATATACCCAAAGGAATGGTTACGGATCAGTTTGGCATGATAGGACTGTTAACTTTCATCAGGGCTGCAGAAACGGAACCTAATCTTGTAACGTTAGCGCTTGGAAGCGATCTGACCACGCTTGGACTTAATTTGAATTCCCCAGAAAGCCTGTATCACACATTTGGCTCGCCCTTCGCAGATAGTCCTTGTAGACCACATGAAATAGATTATCATGTTCCGTCGGAATACCGGATAAACTCGTTCATTAGGGATAAGCTTGCCCCCATAAAACCCAGCCGATACAGTGAAGATTTACTCTTCTATCTTTACTATACCAATGGAGGAGATATTCTACAATTGGCTGCTGCGGCTGAACTGTACGCGCGTGACTGGCGATACCACAAAGAGGAGAGGCTGTGGTTAACGCGTGCACCAGGCGTGGAACCTCAGCTGAAAACGAGCTCTTACGAACGAGGAACCTATTACTTCTTCGACTGCTCAACGTGGAGAAAGGTGGCAAAGGAATTTCACTTGGAGTACGACAAGCTTGATGACAAGCCCACCTTGCAATCCGTCACAGCATAA

Transcript

amic_s0015.g75.t1

CACGAACCATCACAACTTTTTATATAGAAAAAAGTACGAAATTGCGGCCAAAATTGGCAACAAAATAGAACACGGAAGTTGATTTTGTTTTTCATAATCCAGTCAGGTGCAAGTATTTCATTTTCCATTTCTGTGATACATGGCTCATCATCGCCCTTTGGGTGATCCATTACCTGGAATAAACCAGTATACATTTCCTCCTCGAAAAGGACAGCAGGACTTATCTCCAGGTGGTAGAAAAAACATGGCAGCAATCGGTTCCATGAGAAAAAAGCTATCTGGCTTTAGTGAAGAGGGTGATGATGATTATGGATCTGCTGGGATGTATTTCAACCCTTCTATGTTTCCTCCACACCGATCAGACAAGGAGGCTCATCTTGGAGGTCTATATGGTACACCATCAGGGATGCAGTCACCAGGACCCCATCAGTCGAATTTCTACAGCTCAGGTCTCCCTAGTTCAGGCCTTCCTCCAAGTGTTAATTCTATGCAAGTTCCACCAAATACTCCCAGGGGAATGTCATCTGCACAGTTTGGTAGAAGTCTGTCACATCCTGGACCCACCCATTCCACATCGACAATGTCAGGTAGCATAACAACTCCAGGGGTACCAAGTGTTCATAACATGGGAGGATTACAGGGTGGAAACCTGTCTTCACAGTCAGCAAGTCGTGGAATTTTATCCATGGGTCCAAGAGGTGTGATGGGGCAAATGCCTCCTGGTTCAGGCCATCTGGGAAGCCAAAGTGGGCTCAACAATCTGCCAAAGACCAGTAGAGCAATATCTCTGCCATCGTCATTATCAAGTGGCACATCCAGAAGTTCTCCTATTCCCACTATTGGAATGACACTGTCACAGGCACCCCAGCAGCAACAAACGCATCAAGCAAGAGACTTTAACCTTGGGGGTTCTAGCACAAGTTCTGTGACTGGTGCCATGTCAAGTTTTGGTCTGTCAAGAAGTCAGTCTACTAGTGGATCCTCCCAGGGTATGAGTGGTCCTAGCCTTCCTCTATTCTCTGGAACATTTGCACCTCCTGGTGCTCCAGATTCACCAAAATCTCTTCGGCATATTTTCTCTGGAGCAGGGCAAGGTCTTTCGGATGCTCAAGGTAATAACTCTGTTGGCTTAGACCTCTCTGAGTTTCCTGCTCTGGCAAACCGAAGCCGCCTCGAGAGCCTGAGTCGTGTTGAAGGTGTGCCGCGACTGGAGAGTATAGGAGGTGTAAGTGCACCCCCTGGCAGCATACCTAGCAGGCCTAGCTATGGTGTGGTATCGAAGCCCGCGGAGCCTCAACCGGATTTCTCCATCCACAATGAAGATTTTCCAGCACTCCCTGGTTCAAGTAATTTCAAGTCAGAAAACAACACAGAAAGTTCCACATCTCAGGATCCTTCCAAACAACAGGCCATGAGTACAAGTTCAAGTGTATTTCCTGGAACAGATCTTCGTGGTGGAGCCTCTTATGAACAAGCTTTAAAGGATGTGGCTAAGGATGCGAGATTTATAGCGGGAGAGTCGAAATCGAACTCGTCAAATCACAAACAACCGCTGAGAGGAATCCAGACATCACCATCAGGTATGATCTCCAATATACCCAAAGGAATGGTTACGGATCAGTTTGGCATGATAGGACTGTTAACTTTCATCAGGGCTGCAGAAACGGAACCTAATCTTGTAACGTTAGCGCTTGGAAGCGATCTGACCACGCTTGGACTTAATTTGAATTCCCCAGAAAGCCTGTATCACACATTTGGCTCGCCCTTCGCAGATAGTCCTTGTAGACCACATGAAATAGATTATCATGTTCCGTCGGAATACCGGATAAACTCGTTCATTAGGGATAAGCTTGCCCCCATAAAACCCAGCCGATACAGTGAAGATTTACTCTTCTATCTTTACTATACCAATGGAGGAGATATTCTACAATTGGCTGCTGCGGCTGAACTGTACGCGCGTGACTGGCGATACCACAAAGAGGAGAGGCTGTGGTTAACGCGTGCACCAGGCGTGGAACCTCAGCTGAAAACGAGCTCTTACGAACGAGGAACCTATTACTTCTTCGACTGCTCAACGTGGAGAAAGGTGGCAAAGGAATTTCACTTGGAGTACGACAAGCTTGATGACAAGCCCACCTTGCAATCCGTCACAGCATAATTGTGTCAGTTATATTTGCTGGAATGGTGTGCACTTTTCTGTTATCATTTTTTAAACCTGGAAGTGTTTGTAGGGGAACTAAAATGCCAAGTAAATTTGACGTTTAGAAATTGTCGGCTTATGGTCCCTCCCTTGGTTTCTAAGCAGTGAATGGCCTTAAAGTGCATTTGTTTTGAGTAGTTGTATCTCTAGTCAGACCTTAAAGTAACGGAAAGTGCTCGTGAAGAGTGTTCGTAACCGAAGATTTCATGTCCAACTTTTTCCAACAGTGATTCTTatgggccatttttgaatttacgttattctctatatcaaagcaagtctgattgcgaacttatgaatatcagttttcattcctactggaagtagaactgcttgccataacaaaggttttgcccttggactctctttgacaacgatagtaaggggaactcgaaaagtggcGGTGTTTATGATATTGTAAAGAAGAGCTGTTGTCGGTCCCATTACTTTGCGAGCCAGGTCGTTTCTTTCCTGGGATGTTGGTCGTGTAATGACGATCCTTTTTAATTTCGTCATTCGCCGATTGATTTTTCTTTCGTTTGATTTGTTTGGATGCTAATCGTAGTTTGCAACCAACAGCAGCACTACATTCCAGCTTTACCCTTTAGACAGGCGCTAAAACTGTATACTTTTAGTTGCTAATATACTTGGATTGGTAGACTTCGTAAAAGTCCTTTCTTTTCTTCTGGTTTTGCGTTGTTTGGTTTTTACTTGTACTTTCTTGTTTCTATTAGTGGTGGAGCATTTTCCGTCTTGGATATTATCTTCGACAATTGTTAAGGATTTGTAAAAAGCGATCCGAGATGTAAAATACGGAATTTCATTAAAGAGAGACTTTTAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C5L3	CCR4-NOT transcription complex subunit 2 OS=Mus musculus OX=10090 GN=Cnot2 PE=1 SV=2
Q9NZN8	CCR4-NOT transcription complex subunit 2 OS=Homo sapiens OX=9606 GN=CNOT2 PE=1 SV=1
Q94547	Regulator of gene activity OS=Drosophila melanogaster OX=7227 GN=Rga PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003216 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04153 all species →	NOT2_3_5_C	NOT2/NOT3/NOT5 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007282 all species →	Domain	NOT2/NOT3/NOT5, C-terminal	Interproscan
IPR040168 all species →	Family	Not2/Not3/Not5	Interproscan
IPR038635 all species →	Homologous_superfamily	CCR4-NOT complex subunit 2/3/5, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23326 all species →	CCR4 NOT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0030015 all species →	Cellular Component	CCR4-NOT core complex	Interproscan
GO:2000036 all species →	Biological Process	regulation of stem cell population maintenance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12605	CNOT2, NOT2; CCR4-NOT transcription complex subunit 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.