Detailed information of amic_s0017.g121.t1 in Acropora microphthalma

Genomic Location: sc0000017_pilon:1378629...1404997
NR annotation: XP_029189284.2, E3 ubiquitin-protein ligase UBR2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IWV8E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens OX=9606 GN=UBR2 PE=1 SV=1
Q6WKZ8E3 ubiquitin-protein ligase UBR2 OS=Mus musculus OX=10090 GN=Ubr2 PE=1 SV=2
Q8IWV7E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens OX=9606 GN=UBR1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003166 (this species only)
Ubiquitin familyE3|E3 activity|N-domain · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity|UBR-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02207
all species →		zf-UBRPutative zinc finger in N-recognin (UBR box)FamilyInterproscan
PF18995
all species →		PRT6_CProteolysis_6 C-terminalDomainInterproscan
PF02617
all species →		ClpSATP-dependent Clp protease adaptor protein ClpSFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042065
all species →		Homologous_superfamilyE3 ubiquitin-protein ligase ELL-likeInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR039164
all species →		FamilyE3 ubiquitin-protein ligase UBR1-likeInterproscan
IPR003126
all species →		DomainZinc finger, UBR-typeInterproscan
IPR014719
all species →		Homologous_superfamilyRibosomal protein bL12, C-terminal/adaptor protein ClpS-likeInterproscan
IPR044046
all species →		DomainE3 ubiquitin-protein ligase UBR-like, C-terminalInterproscan
IPR003769
all species →		DomainAdaptor protein ClpS, coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21497
all species →		UBIQUITIN LIGASE E3 ALPHA-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071596
all species →		Biological Processubiquitin-dependent protein catabolic process via the N-end rule pathwayInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0030163
all species →		Biological Processprotein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0017.g121.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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