Gene detail

Detailed information of amic_s0017.g13.t1 in Acropora microphthalma

Genomic Location: sc0000017_pilon:125667...151925
NR annotation: XP_029182375.2, mitochondrial basic amino acids transporter-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0017.g13.t1

TCTACCCAAAGATTAAAGGCCAAAATTTTGATTTGTTTTTTGTGGTAACTGCTAAAAATGAATCTGCCATAGGGATTTGATGAAAGATAAACGAATTAACTAATGATACTTCTACTCGGAGGATGGAAATTGCCCGTGAGTTCATCGCCGGGTGGTTTGCTGGCTGCGCAGGAGTTATTGTTTCACAGCCATTAGACACCATCAAGGTCAGATTGCAAGTGTTGAATTCAGCCAACCAGCAAGTTCCTCTCGGTACATACTCCTGCTTCACAAATATCATCAAGAATGAAACGGTATTTGGTTTGTTCAAGGGAATGGCTCCACCCTTGGCAGCCGTCGCGCTGCAAAATGCCATTTTATTCGGTGTGTATGGTAATGTGTTGAGCTTGTTAGCGACAAAGCCTGATCAGAAACCTTCGCTTTCTCACATCTCTGTCGCCGCTGCTGCTTCTGGAGTGGCCCAACTCTGGGTCGTCTGTCCCATGGAACTTGTCAAGATTAAACTTCAGATGCAAACAGAAGCGAAACGAACAAACTCGACGCGATATCGTGGCAGCATGGACTGCGTTCGCAAAATTTACAAGTCAGCTGGAATTAAAGGCATATTTCAAGGCTTCTCACCTTCAATGGTTCGTGACGTTCCTGGATTTGTCGTCTACTTTGGTTCGTACGAGATCCTCCTCGATCTCTTGATCCAGAGGAGGTCACGTGGAGACGCAAGTCCGCTGGCTTCAATTTTCGCGGGGGGTGTGGCGGGAATGCTCTCTTGGGCAGCGACATTTCCTTTTGATGTGGTAAAATCGCTGATGCAAGCAGACGGAAATGATGGCAAATTCGTATACAAGGGAGCTAGGGATTGCTTTGTTAAAACCTACAGAACAGGAGGCATTAGACTTTTATTCGCTGGTTTGGTGCCAAGTCTTTTAAGAGCGTTTCCAACCAATGGAATCATTTTCCTTGTTTACAATTTTGTTTCTAACTTTTACTCAGAAAGGTTGACGCAAATGAACGCGAATCTAAATTGAAATGAATTTGCTTTTTTTCTTATGCTCTTAAAAATCTTATTTTCCTAATTTTTAGCAAAAACTTTTGGAGGGATTCTTTTGAAATCTCATGTTGCCCAAAGGGTATTTTCTTGAAAATGCAAGACAAAGATGTTGGAatatatttatgtttcttatcaatttatttatttcttCTTAAGTGATACTTGCAAATGAGCAACATGATTCTTTGAAGAACTGTAGTCGCGTATCATTGATTCCTTCAGTTTCATAAAGTATTATCGATGAGAGAGACAGGATTCTGGAATCGTAAAAAGTTGATACTGGCGCGTATTTTTGTGGCAGAACTCGTTAAAAATTAAAAGAGAATATTTCAGGTGTAAGCTGAAGCGTTTGGGTCATTGATTTAATGAGCTTATTTAATGACGTAATTTCAAAACATAAGTACAAATCATTTGTATCATAGAGCAATTGTTCTAATCACCAAGTCACACTGTCGTTACATTTTAATTTGCGAGCTGGAGAGatagggagtttaagaaataacgacggacggcaacgacaacgtcaacaccacaaatcaatgatttgattggttgaatgaggaaaaaacgtcgtattgcaagtgccacacgctttttggcgcaatctttttacTTCTTATGCGAAGTCTCGTTCATGATGCATGATTAAGGATGGAAAATAACGAGAAAAAATTCCTTGTGGATGAAGTTGAACCTCGAGTCGTAAAATGCGTGTTAGTTGGTGATGGGGGAGTTGGAAAAACTTCCCTTCTTGTAAGTTACCTAACCAACGGATTTCCTAACAACTATATTCCCACAGCGTTCGATGATTACAGCGtttcagtGAAAATCGACAGGGTGCCTTATACTTTGCAATTTTGCGACACGGCTGGACAGGAAGACTTTGATGTTTTGCGACAGCTCTGTTACCCAGCTACCGACGTCTTTATTGTTTGTTTCTCCGTGGTTTCCCCAACGTCATTTGCAAACGTTGGAGACAAATGGCTTCCAGAAATCCGTCGCTATTCAAGGAAGGTGCCCATTGTTCTCGTTGGGACTCATTGCGACTTAAGAACCGACGTTCAAGAACTAATTCGGCTGTCAGACATTGGACTGGAGCCAATAACTAGGCAAAAAGCCGAGAATTTGGCAAAACGCAAAGGAATTGAATGTTACATTGAAACATCGGCCGTAACCCAGAAGAACATGAAATCCGTTTTTGATGAAGCAATTATTAACGGATTAAGACCACCTACGACTTCAAGGAGATCCGATCTCAAAGGTTGCGTTTGTTCTGTAATGTAGCATGGTTTGTGCGTTATTTCATTGTCTAATTTCAGCCTTGGCCCATTCCATATTTTCAGCGTGATGGTACAGACTTCAGCATTTTTGGTGATGTCATCATTATTTATAGCATATTACAGTTCATCGATGAAGGGACGCCATGCACATTTCCAAATTGTTGACTTGTTTTGTAGCAAAGCGAGAGGAAAAAGTCGAGTGCTGTCGAGCATAAAATTTACAGAAAAAGAAAGAAAATTGATTTTGCGTCATCACGCCCCAAGGAATATTCGCGAATAGTAAGATCGCCATTCATTGCAAGCTACGGTAATTGGTTAGTGGCCAATCAACTGGAGAAGACTTCTTGTGATCATGTGTTTGTAATAATTTTGTTTCTTGACCTGTTTCACCATCTTTAATGAGATTAACAACACAAATGCCTTCGTTGCTGTCAATGCAaaatcgtgttgaagatagtatacaactatgttttttccaaggggaggtgaatagtggtggatatataccgagacgcgaagcgtcgaggtatatatccaccgctctgcaccgaccctgaggTTTAACAACACAAATGCCTTCGTTGCTGTCATTGCAAAATCGTGTTGAAGATAGAACGAATTATTCAACTCACACCATGCAAACAAAAAGTGAAAAAAATATTAGTCGCGAACATGGAGAGACAAGACTGATGACGGAACGAGAAGACTTCGAATGAAGTGTCGTTATTTATATTTTCATGAAATGGAAACAGTGGAATATAATTCAGATACATAAGACAGATATAGATATAAAGGTTTTATGGAAGACACTACGTTTTGAAGAACAAAAGTAAAATAAATTATGACGAAGAAATGGTAGTCCTGTGGCGCTGTAACTGGCAAGATCATCGGTTTGCGGTTGAGAATGGAATGAGAGTTCAAACTCTGTCCGCAACTTCGCCCTTGGGTTGCATGCTCATGTTGAAAGGGGAGTAGTTATCTCGCCATCAGAAAGTTTCCGCACCAGTCATTTCGTCCTAAAGAGTTGTTCGTTCGTGTACCGCGAACGCTGAAGGAGCTTGATACAGTTGCAGTGGCGAAATGACCAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CFJ7	Solute carrier family 25 member 45 OS=Mus musculus OX=10090 GN=Slc25a45 PE=1 SV=1
Q08DK7	Mitochondrial basic amino acids transporter OS=Bos taurus OX=9913 GN=SLC25A29 PE=2 SV=1
Q8N413	Solute carrier family 25 member 45 OS=Homo sapiens OX=9606 GN=SLC25A45 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15101	SLC25A2_15, ORNT; solute carrier family 25 (mitochondrial ornithine transporter) member 2/15	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.