Genomic Location: sc0000017_pilon:1482708...1497742
NR annotation: XP_029201964.1, exportin-1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0017.g134.t1 |
| Transcript |
| amic_s0017.g134.t1 |
| Protein |
| amic_s0017.g134.t1 |
| UniProt accession | Description |
|---|---|
| Q80U96 | Exportin-1 OS=Rattus norvegicus OX=10116 GN=Xpo1 PE=1 SV=1 |
| Q6P5F9 | Exportin-1 OS=Mus musculus OX=10090 GN=Xpo1 PE=1 SV=1 |
| O14980 | Exportin-1 OS=Homo sapiens OX=9606 GN=XPO1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004289 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18787 all species → | CRM1_repeat_3 | CRM1 / Exportin repeat 3 | Repeat | Interproscan |
| PF08389 all species → | Xpo1 | Exportin 1-like protein | Repeat | Interproscan |
| PF08767 all species → | CRM1_C | CRM1 C terminal | Repeat | Interproscan |
| PF18777 all species → | CRM1_repeat | Chromosome region maintenance or exportin repeat | Repeat | Interproscan |
| PF18784 all species → | CRM1_repeat_2 | CRM1 / Exportin repeat 2 | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR040485 all species → | Repeat | Exportin-1, repeat 3 | Interproscan |
| IPR013598 all species → | Domain | Exportin-1/Importin-beta-like | Interproscan |
| IPR014877 all species → | Domain | Exportin-1, C-terminal | Interproscan |
| IPR041123 all species → | Repeat | Chromosome region maintenance repeat | Interproscan |
| IPR041235 all species → | Repeat | Exportin-1, repeat 2 | Interproscan |
| IPR045065 all species → | Family | Exportin-1/5 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11223 all species → | EXPORTIN 1/5 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005049 all species → | Molecular Function | nuclear export signal receptor activity | Interproscan |
| GO:0000055 all species → | Biological Process | ribosomal large subunit export from nucleus | Interproscan |
| GO:0000056 all species → | Biological Process | ribosomal small subunit export from nucleus | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006611 all species → | Biological Process | protein export from nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14290 | XPO1, CRM1; exportin-1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |