Gene detail

Detailed information of amic_s0017.g162.t1 in Acropora microphthalma

Genomic Location: sc0000017_pilon:1709142...1714057
NR annotation: XP_015771508.1, PREDICTED: matrix metalloproteinase-25-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0017.g162.t1

CCACTAGGACAATAGACCGAAGTTATGACTATTGTTTCAGTTGATTGGGCAAGATGTTTTGAAAGGACTTTGAAAGGCTTTTACCGACTTCCGGCTCGAACATGCTAACGTAATTCCTTTGCAAGGAGTTATGAAGTTCGTTTACTTCAAAGTGATTAAAACTACATTATTAAATGCTAAGTAATGTTCGATCCAATATGACAGAATTTGCATGAACGCGATCATGTGTGACATAAAACATGAccgaaaacatttttcgggcttactttgcgattgcttaaatcgcaatcacaactgtgatgatcacttcttcagttcactcgtatgtccgcagttcacataatattCATGTGTGACATAAATGTTGCACATCTTTGCCTGACACTTGAGACAGTGTCTATCATATGCAATCGCAAGCCATGTTATTCTTGCGGAACCTTGATTGAGCCACAATTTATTTCTGATAGCACAACAAGCCGCTTCTTGCTCTTAATCCAACAGAAAAGTGAAAATTATATTCATGTTTGGACCTTTTAAAGTTAGGGTTAACCTTATAAGGATACTAAACTAATCTAACGAAAATCTGTCATCAGTTGGTGCTAGGCTCCAGGCGCCGTCTCTGGATTTTTGATGATTATCACCCTTTATTTCGCCGAATTATTTATGAAATCAGGCGATTAATTGAGTGAAAACGAGAGAAAAGTAATAGAAACAGTCAAGCCGACAATAGGTGGACAACAAAACACTTAAACTTGAAATCAGACACAGATACTTAGTCCAACATAACTAATTTTCTGCTCAGTTCTGTTGACCTCAATGTCGTCACAGGCACCCTTTGGGTCAACAACATCTTTCATGAGACGAATCAGCATGAATCAGGTGATTTCTCTAATGCACCATCTCCGACTTCATTTACCAAATATGGATGTATATCAAAAAAGTGAAAGAGTCCTTTTATAATGGAACACTCCCTTTCCGCTTTGACGGATATGATTTTGTATTTGCGGTGGTGTTAATGACAACGTTTATTTAGCTGTCATCCCTTGATATCACTGAGTCTCTCGTTAGGAATATAAAGAGTCCACATCTCTGGTAAAGCCAACAGTGTGAGGAACTGCCATCCACAAATCATCTAAGGATAAAGCAAAGTAATTGTGACCACTGCATTGGTATCTTCAAATATTTGAAAAGAATGGCGCACGGCGACAATTGTTGCTCTATGACAACAACTTCTTTCTCCATCTTCGTGGCAATTTTTTGCCTTGTTTGTGTGCAAAATCCTGTAGAGAGCAGCCCAGCTAACTCAAGGCTGGTAGCCGGAGGGATTGACTGGTTATCAAGATATGGATATTTAGTAAACGATGACCCGAGAACTGGAAATCTTAGAACTCAACAAGACTTGGAAAAATCCATCAAAATGTTACAGCGTTATGCAGGGCTTCCAGAAACAGGCCAAATGGACGCCGCAACCATCAAACTGATGGGTGAATCTCGCTGTGGTGTGGCCGATTTTGGAACGTCAGATGCAACCAAAAGGAGGAAGAAGCGGTACACTTTGCAAGGCACCACTTGGAAGAAAAATCAACTCACCTACAAAATCAACTCCTTCACAAGAGGCATTTCAGAAGCAAAACAGCGAGAAATCTTCAAGAAATCGTTTGATTTATGGTCCGGTGCCTCTAACATGAAAATCAAGGAAGCAAACAAATATGCTGAAGATAAAGACGTGGATATTCAGATTCATTTTCATACCGCGAATCACGGGGATGGCTATCCATTCGACGGAGAAGGAGGAACTCTGGCACATGCCTTCTACCCCCATCATAATAAGGGTCTCTCTGGTGATGCTCATTTTGACGATGATGAGAAATTCTCAACAGGAACCAGCAATGGAATTAATTTGGATTGGGTGGCCGTGCATGAGTTTGGACACAGTTTGGGCCTGGGACACTCCAATGTACGCGAATCAATCATGTACCCTTGGTACAAAGGCTATGTCCCAAACATTAAACTCACCGATGATGACATCAGAGGCATAAGGGCTCTTTATGGTAAACCTTCGAACCCACAACCTACAAATCACGTCACAGAGAAACCAACATCAACTAACACACCTCTACCTGGGGACAAAGATGTGTGCTCGATATCCTCTTATGACACGTTATTCTTGGCTCCAGATGGTAAAACATACGCAATAAAAGGTACTCAATACTGGATCATATCATCTGGGAGTGGCGCAGGTCTTGAAAGTGGGCCCCATAAAGTCACCGACTTGTGGAAGGAACTGCCTACGAAGATAGATGCCGCTTACAAAAGGAGTTCTTATCGACTGGTTTTCTTTAGTGGTTCCACATACTGGAAGTATTTCTATAACAGTCGCCAACAGAGGTATCAGATCGAAGAAAGGGCACGCCCCATTACTGAGTACGGGCTTACGGCAGATTTGGCCAACATGGATGCTGTGTTCACATGGAAAAGGAACAGCAAAACATACTTCTTCAAAGGAGACCAGTACTGGCGCTTTTATGGAGGAAGAATTGACTACGGCTATCCGAAGAGCATAAGTGTTTGGAAAGGACTACCTTCCAAAATTGATGCAGCCTTCAAATGGCGGAACGGCAAGTCGTATTTCTTTGTTGGGGAAAAGTATTACAGATTTGACGATTGGAACATTCAGGTAGAAGCTGGTTATCCCAAGAGTATTGCTATAAAATGGATGAGATGTGAGAAGGACAATGTTATGGCTGCCATAGTTCCAACCAATGCAACATCAGAGGGGAATGGAAAGGAATCGAATCCTACCGTGCAAAGCGCTGGTCAAGGATGTCCATGTCAGTGCTCCGCTGGTTCCACGTTATTCTCCAGCAGTACTGGCATTTTGTTCTCTTTCTTATTGGTGGTAGCTGCCAAAATGAACCTTTAAATTGCACATTTTCATCTAAATTATTGCTGTTTTATTTTTGTGTACATTTGTAATTGCAGCACAAGAACATTGAAAAACATTAATATATTGTATTGCAAGGTTTATATTTGAGACATTTTTTTAACCACAGACTCCAATGTGTAAATACTGTAGAGCTTTCACAGATGAAATAAAAACTTATGTTCCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U435	Matrix metalloproteinase-25 OS=Mus musculus OX=10090 GN=Mmp25 PE=2 SV=1
Q9NPA2	Matrix metalloproteinase-25 OS=Homo sapiens OX=9606 GN=MMP25 PE=1 SV=1
Q10739	Matrix metalloproteinase-14 OS=Rattus norvegicus OX=10116 GN=Mmp14 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000491 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00413 all species →	Peptidase_M10	Matrixin	Domain	Interproscan
PF00045 all species →	Hemopexin	Hemopexin	Repeat	Interproscan
PF01471 all species →	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021190 all species →	Family	Peptidase M10A	Interproscan
IPR018487 all species →	Repeat	Hemopexin-like repeats	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR000585 all species →	Domain	Hemopexin-like domain	Interproscan
IPR001818 all species →	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR036375 all species →	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR033739 all species →	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR002477 all species →	Domain	Peptidoglycan binding-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201 all species →	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0030574 all species →	Biological Process	collagen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0017.g162.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.