Gene detail

Detailed information of amic_s0017.g55.t1 in Acropora microphthalma

Genomic Location: sc0000017_pilon:689697...720531
NR annotation: XP_029189362.2, fibropellin-1-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0017.g55.t1

ATGATGCAGTCAACCTGTTGGATTAGTTTGGTAACAGTATTAGTTTTGAATTTGTCACATCTCCACGTTAGCCATGCAAAGGGAACCTTGTCAATTCAGTTTGTGGATTACAATAACCCAAGTTCACGAGACAATGCGGGTTATTGCTGCGATTGTTGTAGCTTCTTTGGCTATTGCCCTAATAAATGTGATAACTTCTTCAGACTTTACGCAGTGCCATACCCTGTGAACCATTATGGTGTCTCGAGTGCTTGGAATCACTGGGAGACACATGTTATGAGTGGAGGTGATAGTTTTTCCTTTCCTGGTTATGGTCAGTCTCTTGGTAATCATAACAACCCTGTGACGTATCACTTCAATGGAAGGTGGCAGGGAGCATTTGGTGTTATTTTGAAAGTATGGGATGATGACAGTGGGAATATCTTTGGCATTGGTAGAGCTGATGATCTTGTTGATGAAATTTTTGCAAATGTGCCTGGTGTTCCTGCTCAAAAAAATCAACAAAGTGCTGTGGCAAAGAGTGTGACGTTGAATGGTCGAAGATCTACCACCAGAATTTTAGTCCGTGTTTATTGTGATGCTAATTATTATGGCTCGGATTGTAACACATACTGCGTTGGAAGAGATGATGCTGGTGGTCATTACAGATGTGATGAGAACACAGGAAACAAAATCTGTTTGGCTGGATGGATGGGATCCAGCTGTCTTACTGCAATTTGTAAGACTGATTGTGATCCAATCCATGGCTCCTGCACAACACCACACACTTGCATCTGTGCCAGTGGTTGGACTGGGTTAAATTGTGATAGATGCATAAAGAAAGCTGGTTGTTCGGCAGTGCATGGTGACTGTGATCAAGGAAATGACTGTGTTTGTCGTCCTGAGTGGACAGGTCCCAATTGTGATCAAGACTTGAATATGTGCCGTGATTCCCAATTGTGTAAGAATGGTGGGACATGCATTAACACAGACCCTGATCAGCACAAGTGTGATTGTCCTCCTGGTTATACTGGCGTCGATTGTGCAAAAGAAATCAACCTCTGTGCTCCGAGTCTTTGTCAAAACAATGGAACTTGCACCAACTTCAGAACCTACTACACTTGCACTTGTCCAGCTGGATTTGAGGGAGCTAACTGCCAGACAGACATTGATGATTGTAAGCAAGCCAAATGTAGAAATGGAGCAACATGCAAGGATGCAGTAAATGATTATCAGTGTGAATGCGTGGCAGGATTCACAGGGCGCAATTGTGAAATTAACATTGATGAGTGCCAAACAGCCCCTTGTAACAACAATGGAACCTGTATTGATCAAGTGAATGGTTACAGATGCAATTGTCTTCAAGGATTCAGTGATTTCAATTGTTCCACCAACATAGATGACTGTAATTCCACCCTCTGCAGCAATGGAGGCTCCTGTGTGGATGAGGTGAACAACTTCCATTGTGTGTGTCCTGCTGGGTATCTTGGTAGGACTTGCAGCAATGCAACAGATGAATGCTCGACTTTGCCTTGTAAAAATGGTGGAAGTTGCTTGGATTTGCATCGGGATTATAACTGTACATGCCCAGCTGGTTTCACAGGCAAGGATTGTGAAACTAACATCAATGACTGCATATCACCAACACAGTGTAACCAGGGTGTCTGCCGTGATGGTATCGACAATTTCACTTGTGTCTGTCACAGTGGATTCACAGGAGCGCTTTGTGACATAAATGTAGACGAGTGTCTTGATCATCAATGTCAAAATGGAGCCTCGTGTAATGATGGCATTGCTCAGTACACCTGCACATGCGCTAATGGATTTGATGGGCCTCTGTGTAGTAACAATATCAATGACTGCGCATCAGCCTTGTGCATTAACAATGCTACATGCGTGGATAAGATTGCTGATTACGCCTGTAACTGCAGCCTTGGTTTCACTGGTCGACACTGCGAGATACCCATTGATTACTGTGCTTATCAGGGCTGTAACAACAGTGGCACGTGTGTTAATGAACGAGGCTATAGACGGTGTCTTTGCCCGCCAGGGTTCAATGGCTCCAGTTGTGAAATAACACCTTGCATGATGAATCCCTGTTTTAGGGGCACGTGTCATATGCTTTCTGATCTCAGATACAAGTGCCGATGTAGTCGAGGCTTCACCGGAATGCATTGCGATGTTGATATCGATGACTGTGATCCAAGGAACAGCAAATTTATAGTGGAGGATCAAGTAGCTCCTGTTTTTTGTGGACAACATGGGAAGTGTATCGATGGACTTAATGAATATTCGTGCTTGTGTGACAGAGGGTGGACTGGAAAGGAATGTACAGTTGATATTGATGAGTGCTCTCCAAATCCGTGTAAAAACAATGGAGATTGTGTCCAGACATTCAATGCCAGTTATCTTTGTGGTTGTAAAGCTGGATACACTGGAGTAAACTGCACAGAAAATTCATCATGGTGTGAGGGTCCCAGTCCATGTTTCAACGGCAACTGCACTGATGTGGGTGATAACTACACGTGCGCTTGCCTCCCAGGTTATACAGGTCAGCGGTGTGAAACAGATATTAACGAGTGTGAATCGTCGTCGCTGTGTGGTGTCGGTGCAAACTGTTTGAATCTCCCCGGTAACTTTGTTTGCAAATGCGAAGTCGATTTCACAGGAGAACTTTGCAATACACGAATCAATGACTGTGAACCTCACCCTTGTCTCAATGGAGGAACCTGTGTCGACGGCGTGAGATCCTACACATGTAATTGCTTTCCAGGGTTTTATGGCGACAGATGCCAGCAAGGTCAAGATGTCAATGAATGCCAGACAGGGCAGGCTGTTTGCGGAGCGGGAGAAGAATGCGTCAATAAATTGGGCAGCTATGATTGTGTATGTCCTGTAGGAACCACAGGCCCTGAATGTTCAATAAATATTGATGACTGTGTAAGTTCACCTTGTCAGCATGGCGCCATTTGTACCGATCTAGTAAATGATTATTCTTGTGAATGTTGTCCTGGTTGGAATGGCAAGAACTGTGACTTATTTGACAATAAAGAGGATGTTTGTGGCTGTGAAAGTGGGACTTGTGACTGCAACAAACAAACACAGACCAGTTTTTGCAAGTGTTTCCAAGGATTTGAAGGTGACAAATGCCAAACAAATTCCACTGCGGCACAAATTCAAAGACAGAGAGCTGAAGCTCTCCAACGAGAGCagcaacaagaaaaagagaaattagaaaaggaaaaagCTGTCAGGAACAGAAATATTGGTATCGCTGTGGCGTTTTCCATTTTGGGTGTAGTAGCAGGAGCAGTGGTCATGTGGTTTTACATGAAGAGGAAGTCAGCAGGACCCAGACCTCAGAGATTTGGCTTTGATGGTGTTGAGAAGGTCAATTATGCGGGCGGTGAAATGATGTACACAAACCCAGCTTACAGCACAGCTGGCGACGAGGGCACGGTCACTTTTGAGCCTATGCCAAAGCTCTGA

Transcript

amic_s0017.g55.t1

GGATACTAAAGAAAACAAACGATCGCGGAAAACGGATATGTGGCAGTACTAACTTGCTCAATATTTTTATACGGAGTATTTTGTACGTGTCGAGTTGTTGTGCCAACTAGTATTTCACTGCCCATCAGCTGAAATGATGCAGTCAACCTGTTGGATTAGTTTGGTAACAGTATTAGTTTTGAATTTGTCACATCTCCACGTTAGCCATGCAAAGGGAACCTTGTCAATTCAGTTTGTGGATTACAATAACCCAAGTTCACGAGACAATGCGGGTTATTGCTGCGATTGTTGTAGCTTCTTTGGCTATTGCCCTAATAAATGTGATAACTTCTTCAGACTTTACGCAGTGCCATACCCTGTGAACCATTATGGTGTCTCGAGTGCTTGGAATCACTGGGAGACACATGTTATGAGTGGAGGTGATAGTTTTTCCTTTCCTGGTTATGGTCAGTCTCTTGGTAATCATAACAACCCTGTGACGTATCACTTCAATGGAAGGTGGCAGGGAGCATTTGGTGTTATTTTGAAAGTATGGGATGATGACAGTGGGAATATCTTTGGCATTGGTAGAGCTGATGATCTTGTTGATGAAATTTTTGCAAATGTGCCTGGTGTTCCTGCTCAAAAAAATCAACAAAGTGCTGTGGCAAAGAGTGTGACGTTGAATGGTCGAAGATCTACCACCAGAATTTTAGTCCGTGTTTATTGTGATGCTAATTATTATGGCTCGGATTGTAACACATACTGCGTTGGAAGAGATGATGCTGGTGGTCATTACAGATGTGATGAGAACACAGGAAACAAAATCTGTTTGGCTGGATGGATGGGATCCAGCTGTCTTACTGCAATTTGTAAGACTGATTGTGATCCAATCCATGGCTCCTGCACAACACCACACACTTGCATCTGTGCCAGTGGTTGGACTGGGTTAAATTGTGATAGATGCATAAAGAAAGCTGGTTGTTCGGCAGTGCATGGTGACTGTGATCAAGGAAATGACTGTGTTTGTCGTCCTGAGTGGACAGGTCCCAATTGTGATCAAGACTTGAATATGTGCCGTGATTCCCAATTGTGTAAGAATGGTGGGACATGCATTAACACAGACCCTGATCAGCACAAGTGTGATTGTCCTCCTGGTTATACTGGCGTCGATTGTGCAAAAGAAATCAACCTCTGTGCTCCGAGTCTTTGTCAAAACAATGGAACTTGCACCAACTTCAGAACCTACTACACTTGCACTTGTCCAGCTGGATTTGAGGGAGCTAACTGCCAGACAGACATTGATGATTGTAAGCAAGCCAAATGTAGAAATGGAGCAACATGCAAGGATGCAGTAAATGATTATCAGTGTGAATGCGTGGCAGGATTCACAGGGCGCAATTGTGAAATTAACATTGATGAGTGCCAAACAGCCCCTTGTAACAACAATGGAACCTGTATTGATCAAGTGAATGGTTACAGATGCAATTGTCTTCAAGGATTCAGTGATTTCAATTGTTCCACCAACATAGATGACTGTAATTCCACCCTCTGCAGCAATGGAGGCTCCTGTGTGGATGAGGTGAACAACTTCCATTGTGTGTGTCCTGCTGGGTATCTTGGTAGGACTTGCAGCAATGCAACAGATGAATGCTCGACTTTGCCTTGTAAAAATGGTGGAAGTTGCTTGGATTTGCATCGGGATTATAACTGTACATGCCCAGCTGGTTTCACAGGCAAGGATTGTGAAACTAACATCAATGACTGCATATCACCAACACAGTGTAACCAGGGTGTCTGCCGTGATGGTATCGACAATTTCACTTGTGTCTGTCACAGTGGATTCACAGGAGCGCTTTGTGACATAAATGTAGACGAGTGTCTTGATCATCAATGTCAAAATGGAGCCTCGTGTAATGATGGCATTGCTCAGTACACCTGCACATGCGCTAATGGATTTGATGGGCCTCTGTGTAGTAACAATATCAATGACTGCGCATCAGCCTTGTGCATTAACAATGCTACATGCGTGGATAAGATTGCTGATTACGCCTGTAACTGCAGCCTTGGTTTCACTGGTCGACACTGCGAGATACCCATTGATTACTGTGCTTATCAGGGCTGTAACAACAGTGGCACGTGTGTTAATGAACGAGGCTATAGACGGTGTCTTTGCCCGCCAGGGTTCAATGGCTCCAGTTGTGAAATAACACCTTGCATGATGAATCCCTGTTTTAGGGGCACGTGTCATATGCTTTCTGATCTCAGATACAAGTGCCGATGTAGTCGAGGCTTCACCGGAATGCATTGCGATGTTGATATCGATGACTGTGATCCAAGGAACAGCAAATTTATAGTGGAGGATCAAGTAGCTCCTGTTTTTTGTGGACAACATGGGAAGTGTATCGATGGACTTAATGAATATTCGTGCTTGTGTGACAGAGGGTGGACTGGAAAGGAATGTACAGTTGATATTGATGAGTGCTCTCCAAATCCGTGTAAAAACAATGGAGATTGTGTCCAGACATTCAATGCCAGTTATCTTTGTGGTTGTAAAGCTGGATACACTGGAGTAAACTGCACAGAAAATTCATCATGGTGTGAGGGTCCCAGTCCATGTTTCAACGGCAACTGCACTGATGTGGGTGATAACTACACGTGCGCTTGCCTCCCAGGTTATACAGGTCAGCGGTGTGAAACAGATATTAACGAGTGTGAATCGTCGTCGCTGTGTGGTGTCGGTGCAAACTGTTTGAATCTCCCCGGTAACTTTGTTTGCAAATGCGAAGTCGATTTCACAGGAGAACTTTGCAATACACGAATCAATGACTGTGAACCTCACCCTTGTCTCAATGGAGGAACCTGTGTCGACGGCGTGAGATCCTACACATGTAATTGCTTTCCAGGGTTTTATGGCGACAGATGCCAGCAAGGTCAAGATGTCAATGAATGCCAGACAGGGCAGGCTGTTTGCGGAGCGGGAGAAGAATGCGTCAATAAATTGGGCAGCTATGATTGTGTATGTCCTGTAGGAACCACAGGCCCTGAATGTTCAATAAATATTGATGACTGTGTAAGTTCACCTTGTCAGCATGGCGCCATTTGTACCGATCTAGTAAATGATTATTCTTGTGAATGTTGTCCTGGTTGGAATGGCAAGAACTGTGACTTATTTGACAATAAAGAGGATGTTTGTGGCTGTGAAAGTGGGACTTGTGACTGCAACAAACAAACACAGACCAGTTTTTGCAAGTGTTTCCAAGGATTTGAAGGTGACAAATGCCAAACAAATTCCACTGCGGCACAAATTCAAAGACAGAGAGCTGAAGCTCTCCAACGAGAGCagcaacaagaaaaagagaaattagaaaaggaaaaagCTGTCAGGAACAGAAATATTGGTATCGCTGTGGCGTTTTCCATTTTGGGTGTAGTAGCAGGAGCAGTGGTCATGTGGTTTTACATGAAGAGGAAGTCAGCAGGACCCAGACCTCAGAGATTTGGCTTTGATGGTGTTGAGAAGGTCAATTATGCGGGCGGTGAAATGATGTACACAAACCCAGCTTACAGCACAGCTGGCGACGAGGGCACGGTCACTTTTGAGCCTATGCCAAAGCTCTGAAATACCTCAGAAAAATATAACCTACAGTGCAGTTGGATTTTCAGTACTTTTGCCACCATATTTGTTTTCCATCAGAGAAAGGAGAACAACAAGGCGGCTACAGGGCAAAAAGTCCTTATAAGCTAAAATATGGCTGCACTGTAGGTTAAGACTAAGTTGAAAACAGATCTTTACGGGTCTTAACAAAGCACTAATAAGTTAAGCAGGAATTAAGTTTTATCTTTTCATTTCGTGTAAggctggctggctggctggctggctggctggctAGCTATCAACTTTGGTGAGAGGCGGCAATTGAGTGTTTGTATGTGACTTCATTGGCATAACAATTCCGTTAAAAAGATGGAGCTTCCTCTTTCCAATTCTCCCCACCAAGGCaaaaaaaaaaaagaaaagaaaatgactgaaaaagagaaaaaacaaTCATCCTTATGAGAAAGCTGAGATTGAAAGAGCATGAAAACGTCACCTTCCTTGAGACGTGCTGGTCGCGTTCGTGAAGGAAACAGTTGTCGGTTCAGTGCAATTTGTCCCTCGGCTCTATGCAGTATTTCAGACCTCTTTTTTGCTGATTGATTTATGATCATTTTTCAAAATCACCCATATTTTTTGAGTTAGTGTAACAATGACCTTGGTTGTTTAAAGGGTGGATTAAGTCTCCACTGCATGGATTTCTGTTCAGAGCATGATTTGTATGGATCAAGTGAGTTGCATGATCCATAGCTATTTACAGAGGTCAAAGATATTCCAGTCAAACAACTAGGGCCTTTAGATAGGGTGTAAATTTTTTCTATGATTCAAAGAAAAACATCTGTGGTCTTCAGTTCAACGCCCCAAAATAAAGTACATTTTAGCTCCCTTACTCAATAATCAGCTGATTGACAATAAGTGGTTGGTTTGCTCTTGGGCTtaattgactgatttaacaacagattaggaaagtcgctttacgacggcatgcacagtataaatatggtcaaattagaacaggagccagactactgcacacattgtttcgtcatcatctgatgtctgtagtcctgttgctaaatcagcctTGCGTCACTTAAGACGTCAGTTTTGATCGTAAGAGAGTGAGTCGCTAGAAAGTCACTTTAATTTAGGAATTTTACTGCCATTATTCCTCACTGTAGTTATGTTGAAGTTGAATAATGGGGAAAAATAGACACGCATTTGTTTTGTTTTTTGATCAATCCCAAACATTCCAACTACTAACCAATGTCCAAGACTCAGGGGTGCCAGGCACTTGGGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43854	EGF-like repeat and discoidin I-like domain-containing protein 3 OS=Homo sapiens OX=9606 GN=EDIL3 PE=1 SV=1
O35474	EGF-like repeat and discoidin I-like domain-containing protein 3 OS=Mus musculus OX=10090 GN=Edil3 PE=1 SV=2
Q5R7K9	EGF-like repeat and discoidin I-like domain-containing protein 3 OS=Pongo abelii OX=9601 GN=EDIL3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF01414 all species →	DSL	Delta serrate ligand	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF21700 all species →	DL-JAG_EGF-like	Delta-like/Jagged, EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR050906 all species →	Family	Notch signaling pathway	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044 all species →	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0017.g55.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.