Gene detail

Detailed information of amic_s0018.g105.t1 in Acropora microphthalma

Genomic Location: sc0000018_pilon:839549...843062
NR annotation: XP_015761728.1, PREDICTED: RNA pseudouridylate synthase domain-containing protein 4-like isoform X2 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DBR0	Pseudouridylate synthase RPUSD4, mitochondrial OS=Danio rerio OX=7955 GN=rpusd4 PE=2 SV=1
Q96CM3	Pseudouridylate synthase RPUSD4, mitochondrial OS=Homo sapiens OX=9606 GN=RPUSD4 PE=1 SV=1
Q5E9Z1	Pseudouridylate synthase RPUSD4, mitochondrial OS=Bos taurus OX=9913 GN=RPUSD4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005929 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR050188 all species →	Family	RluA Pseudouridine Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600 all species →	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455 all species →	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0018.g105.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.