Gene detail

Detailed information of amic_s0018.g29.t1 in Acropora microphthalma

Genomic Location: sc0000018_pilon:203937...211635
NR annotation: XP_029194303.1, LIM/homeobox protein Lhx1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0018.g29.t1

CTAAATTGCAACCTTGGAAGTAAAGACCCGACCAGCATTCGGATTGTGAAGCGCATCAAGCAAGGTTGGACAGAATAGTTTTTTTTCCAGCTCGATTAAGGCTACCAAACACAAATTTATGCTATGCAGTGATTAGAACATTCCACCTTGATTGAAAAAGAGAGAAGAGAGACTATTCTATTATAATTACACTTTGCAGAAATAAATGAGAGGAAATTCCTTCAAAACACACCAAAAGCCGAATAACCAGTTGTCAAAGGAAAAAAGAAATATAGGTCTAAGAAAGGCTGGATAAAAACAGGCGGAGTCAAAAGATATCAAAAGAGGAGCGCGTAAATGTGTTGTCTTTCAACAAGCTAATTGACGTGTAGCATGGCGAACTGAGTGCTTTCTGAGTCGCGGGCTTTCATCCGTCACTTTGCATTCCGTGCCTTAAACTATATGCAAATTTGGTCCGCCGAATAAAATAGTGCGGCAGTGTTAAGAAAATCCGCAAACCCTCCCTTTAAATTCGCTTTACTGTCCCGTTTAGCAGCTGCTAAGTCAAACGTGCCACCCACCGTGCACGTAGAAGAGTTACTCGCATAAATTTCACGCGTGGAACCCTGTACTTTACATAAACGTACATACATCCATAGCGGACGGAGAAACGAGTAAGCAAGCGAGCTGCCACAATTATCTGGATGAAGGCGCAGATTTGCAGTATGGTTCAACAATGCGCAGGATGCGAGTTGCCCATTTCGGACAAATTCCTGCTCAAGGTTTTGGATCGACTGTGGCACATCAAATGTGTACACTGCCATGACTGCAAAAGCGCACTCACGAACAAGTGTTTTTCCCGAGAAGGAAAGCTGTTTTGTAAGAACGACTTTTACAGGCGATATGGAACCAAATGTGCTGGCTGTTGTTTAGGGATCTCGCCAAACGACATGGTGAGGCGAGCCAAACACTTGGTTTTTCACGTCAAATGTTTCAATTGTTCCACCTGCAACCGGCAAATCTTGACTGGCGATGAACTGTATTACGTGGGAGATAGTAAATTCGTTTGTAAGGAAGACTACTATCAATCACGCCTGCCAGCTAAGTCCGACTCTGATTCCGAAGAGAAGGATCTCAGTTATGGTTTGGACGAAGATTTTGACATAGCGCTTGGAACAAAACGAAGGGGTCCGCGTACCACGATAAAAGCCAAGCAACTTGAGGCTCTCAAAGCTACATTCGCAGCGACACCGAAACCATCTAGAAATATCCGTGAAAAATTAGCTCAAGAAACTGGATTAAACATGCGAGTTATACAAGTTTGGTTTCAGAATCGAAGATCAAAAGAGAGAAGACTTAAACAGCAAGGAGTTTCTCAACCAAACGGCGCCGCGAACCGCGCTGTGAGGTCAGGCAGACGATCAAGAAGAGCGAGAGGTGAAAACCTTGGAAACGAAACAGCACCAAACAGCGAACAGTCAATCAACACATCGCATATAAATTACTCAGCTTCTCAAAACGCACACTTCCCCACGGCAACATTTGATGATTTCTACATGAAGGCTGATCCTAGTTTACTAGCTGATGTGCCAACTACTTTAGATAACTCTCAAATGCTCCATAACACGGGATTTAACAACCAGGCAATCGGCATGCCACCGAATTCTGTTAACGATGGAAGCCCTGGAATGCAAATTAGCAACTGTGCAATGGGGCAAAATACGAACTGCGTCATCTACGAAACCACAGCAGCAACCGCGGGGAGACCAGTACACAACACTATTCCATCTGCTGCTGAGGTCTGGTGAAACTGAAGTGGGAAACTTAAACTGCGCCTTAAAATTGCAGTTGTCTATATGCAATCAGGCGGACAAGGATCATGGAAAAAATGTATACATTATTTATTGCCTACAAAGGACGCGAATTCCCTTGTCAAAAAGAATTCACCTGAAAATGGTGTTAATCCACATTTGAGCCAAGATGTAAGAATAATGCGGGAAGACAACAATCTTGTCCAGTAAAAAGCACGCACTTATCTTACTGAACTTGGACCCCAGGAAAAGAAAAATCTTTTTATCGTCGAGCTGAATCAATGGAACGCCGCTCGGGAATACGACTAGTCATTAGAAAGATTAAGCAAATAATGCCCCCAGGCTATGCATTAGCGAAGGAGTTTAGTTGGAATCAGCTTGATGAACAGAGAAGGCTATGTGAAATAAAAATTATGCAACTTTACAGATGAAACACATTCTAATATAAAGCGCCCAGAGAAGAAAGTAAAATGTAACTTATATGATAGTTCGCAGGTAAACGGACATCTGTATGTATGAATTTGTAAATGTTTTAAAAGAATATTTTATAACACTCTGGCGTGTGAAACGCAAGAGCTGCCTAGACAAGAGAAAAAAAACCCACAAGAAATAAAAAGAGAGATTTTATTAACGCTTGTAAAACACTTACAGGGAAAAAGAATAGAAAGAGTGTGCTGATCCTGGAGATTTCAGATTTCAATTCAAAAAATAAAATAATATCCTCACAACAGGTGTATAACATGTGTGTTTACTCGCAAGTAAAGGATAACTGTTTTACACTTTGCCAAGCTTGTCTCATGGAGAAATTTGACAAAAATTGCATTTATGTGCTTGTCAGAGCTCGAACGCTCATTATCACCTGCTTGTATATCTTTGAAATCATTTGAACCTATCACGGCAAGCTATCTTTGGTTCACAGACAGAGAGTCAGCCTTGGTAATGCAGTTCAGATTCCCATTGTTTTCTACTTCTTGGCACTGATCAGTTAAGAAATGAATGTCTATGATAGTTCTGTGTTAAAAGGGTATGGTGAAAAGGCGCCTCAGGAGCAAGAGGCTGGTTTGAGTGTTCTCCTGCACCATTGCTTACAAAAACAAGGGAGCCAAAACAAGCCCCATTGACGGAACCTCTTTGAAAAGAGCTTGGCAGGCGGTCGACAGAGAACGCAAAACACATGGACCTTACGAAAAGACCACCTAATGTTTTGACTAACAGACTCCGGTTTCTTTCTTTAAAAAGATCAAACTAGCTCATGTTTTATGTACGAGCCACAAGTGAGGCTTTTTAAACCAAGACTTTCGAGTTGGCCGAGCCAGCAGGGGGCTGATTACTTCTTGTCCTCAGCACAGCCATGTTTTCGACTGCTTTTGTTTTAAGGCGATTTAATCCCGCCTTACAGCAAACGTGTCCCAAAAGCTACGCGGTGTGTTGAACGCTATTTTCTGTTCGTTACGCACGAACTTTTCACGAGTCATCTTACTTCCAAATAAAACTGAAATCAGTTAAAAGATGTGGTTTCTGCCCTTGTGGGTCAACAGGAAATCTAATAAATCGGTTTTAATAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29674	LIM/homeobox protein Lhx1 OS=Xenopus laevis OX=8355 GN=lhx1 PE=1 SV=1
Q90476	LIM/homeobox protein Lhx1 OS=Danio rerio OX=7955 GN=lhx1a PE=2 SV=1
P53411	LIM/homeobox protein Lhx1 OS=Gallus gallus OX=9031 GN=LHX1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004775 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR050453 all species →	Family	LIM/homeobox transcription factors	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR049618 all species →	Domain	Lhx1/5, LIM domain 1	Interproscan
IPR049619 all species →	Domain	Lhx1/5, LIM domain 2	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208 all species →	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09372	LHX1; LIM homeobox protein 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.