Gene detail

Detailed information of amic_s0018.g3.t1 in Acropora microphthalma

Genomic Location: sc0000018_pilon:15356...31780
NR annotation: XP_029194280.2, calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0018.g3.t1

ATGGAATTGTCTCACACATACCCGGCGTCCGACGTGTTGAACTATTTTTCTGTGAACGAAGCAAGAGGCTTGAGTTTGGAGGCATTATCTTTGGCTCAAGAGAAGTATGGACCGAACGAGCTTCCAGCAGAAGAGGGTAAGCCACTTTGGAAGTTGGTACTGGAACAATTTGACGATTTACTGATAAAAATCCTCCTTGCAGCTGCCGTAATTTCGTTTGTTCTTGCTCTGTTCGAGGAGGGAGAGGATAGAACTACGGCATTTGTAGAGCCCTTCGTTATTCTCGTTATTCTTATAATAAACGCCATCATAGGAGTTTGGCAAGAAAGAAATGCGGAAAGTGCGATCGAGGCTTTGAAAGAATATGAACCAGAAGTAGCAAAGGTCTTAAGACAAAACAAATCAGGAATTCAGAGAATAAAAGCAAGGGATTTGGTTCCAGGAGACATAGTAGAAGTTGCCGTTGGTGACAAAGTTCCAGCTGACATTCGTATAACATCGATCAAGTCAACAACCCTTAGAGTAGATCAATCCATTCTAACAGGAGAAAGTATTAGTGTTATTAAACACACAGACTCAATCCCAGATCCAAAGGCAGTCAATCAAGATAAAACTAACATGCTATTTTCTGGCACAAATATTGCTGCTGGAAAGGCCACAGGTGTAGTGGTTGGGACTGGTTTGAATACTCAAATTGGGAAAATCAGGGACGAAATGGTTGACACAGAGGAAGAGAGAACACCTTTGCAGCAGAAACTAGATGAATTTGCTCAACAGTTATCAAAGGTAATCACAGTTATTTGTATTGCAGTATGGGCCATAAACATTGGTCACTTCAGTGATCCTGTTCATGGGGGCTCCTGGTTAAAGGGAGCTGTCTATTACTTTAAGATAGCTGTTGCCTTGGCAGTAGCAGCTATTCCAGAGGGACTACCCGCTGTTATAACAACCTGTTTGGCCTTAGGTACACGTAGGATGGCCAAGAAAAATGCTATTGTTCGTAGCCTCCCTTCTGTGGAAACGCTTGGTTGTACATCAGTGATTTGCTCAGACAAGACAGGGACCTTGACAACTAACCAAATGTCAGTTCACAAGGTCTTTATTTTGAATGAAGTAAGGAGGGATCATGCTACTTTCCATGAATTTGAGGTGGAAGGCACAACTTACGACCCAGTAGGAGATGTAACATTAGGTGGAAGGAGAATTAATACACAAGATTTTGAAGCTTTGCCAGAATTTGCCACCATCTGTGCAATGTGCAATGATTCAAGTGTGGACTACAATGCTGTCAGAGATGCTTATGAGAAAGTGGGTGAATCTACAGAAACTGCACTGACAGTCTTAGTTGAAAAACTCAATGTGTTTGGTACAAATCTGGTTGGAATGTCTAAGGCTGATCTGGCAAATACATGTAATAATGTCATCAAATCGCATTTCAGCAAGGAATTTACACTGGAATTTTCTCGGGACAGAAAATCAATGAGTGTTTATTGTACTCCTATTGCTGATGGACCAAACTCTGTTCATGACAATAAACCAAAAATGTTTGTTAAGGGAGCTCCTGAGAGCATCATTGAAAGATGTAATTTTATGAGACTGGGTAAAAGCACGCTTCCTTTGATAGCAAAAACTAAGAAGCAAATTATGGAACTTGTTAAACAGTATGGAACAGGGGCAGACACACTCCGTTGTTTAGCTTTGGCAACAGTGGATGAACCTATTCCCCCAAGTGAAATGGACCTTGAAGCATCTGAAAAGTTTGCAGGTTATGAGAGCAACATGACATTTGTTGGTGTAGCAGGCATGTTAGATCCCCCCAGAAAGGAAGTTAAGGATTCCATTGAGAAATGCAGAGGTGCAGGAATCAGAGTCATAGTCATAACTGGTGACAACAAGGGAACAGCTGAAGCTATCTGCAGAAGAATTGGCATTTTTGGACCCGATGAGGATACAACAGGTTTGTCATATTCAGGCCGTGAATTTGATGATTTAACACCAGAAGAGCAGAGGATGGCTTGTTTAAATGCAAGATTGTTTTCACGAGTTGAACCATCTCACAAGAGCAAGATTGTTGAATATCTTCAGGCTGATGGTGAAATATCAGCCATGACAGGGGATGGGGTCAATGACGCACCAGCACTGAAGAAAGCCGAGATTGGAGTGGCCATGGGGTCTGGTACAGCTGTGGCAAAATCTGCTTCTGAAATGGTATTGGCCGATGACAACTTTTCCACCATTGTAGCAGCTGTAGAAGAGGGAAGATCTATTTATGATAACACCAAGCAGTTTATTCGCTACTTGATTTCCTCAAATATTGGAGAAGTTGTTAGCATTTTCCTGACAGCTGCCCTTGGAATGCCTGAAGCACTCATCCCTGTGCAGTTGTTATGGGTAAATCTTATGACTGATGGGCCTCCTGCCACAGCACTAAGCTTTAATCCTCCAGATGTAGACATCATGATGAAGCCGCCACGCAAGGCAAAGGAAGCTCTTATAAGTGGCTGGTTGTTCTTCAGATACTTGGCCATTGGAATCTATGTTGGTGTTGCTACTGTTGCAGCCTCCGCTTGGTGGTTCATGATTTATGAAAATGGACCAAAGGTGTCTTATTATCAACTAACACATCACATGCAGTGCACCACTGATCGTGCAAACTTTGATGACGTAAACTGTGAAGTATTTGGTGATCTTCATCCAATGACTATGGCACTCTCAGTGCTTGTTACAATAGAAATGTTCAATGCTCTAAACAGTTTGAGTGAAAACCAGAGCTTGTTTGTGATGCCCCCTTGGCGGAACCCTTCTCTTATAACAGCCATTGCTGCTTCATTTATCATGCATTTTGTCATTCTCTATTTTAAGATAACAAATACGATTTTCCGTATAACACCTCTAAATTGGGATGAATGGGTAGCAGTTCTTTACTTCAGTTTCCCTGTTATCATATTGGATGAAGTTCTCAAGCTTTTCTCCAGAATTATAGCTGAACCTTCCCATCCATCTCCAAAAGCAAAAGTGAAGTCCAACTAA

Transcript

amic_s0018.g3.t1

GTCCAGGCCGCATGGTGGTCCATGTGAATGAAGATAAGACACGAAAACAGTTTCGTCAGTGACTGTGTGATAGGAAGCGATGTCAAACGTAAATTTCGTCAATACTCAGCACTAACCTTACAAAGTATACTTGATTTTCATCATTTTAACTGAAACAGTGAATAATTCCAAGATTTAGTCTGTTTTTAGTCGCTGCTTCCAACATGGAATTGTCTCACACATACCCGGCGTCCGACGTGTTGAACTATTTTTCTGTGAACGAAGCAAGAGGCTTGAGTTTGGAGGCATTATCTTTGGCTCAAGAGAAGTATGGACCGAACGAGCTTCCAGCAGAAGAGGGTAAGCCACTTTGGAAGTTGGTACTGGAACAATTTGACGATTTACTGATAAAAATCCTCCTTGCAGCTGCCGTAATTTCGTTTGTTCTTGCTCTGTTCGAGGAGGGAGAGGATAGAACTACGGCATTTGTAGAGCCCTTCGTTATTCTCGTTATTCTTATAATAAACGCCATCATAGGAGTTTGGCAAGAAAGAAATGCGGAAAGTGCGATCGAGGCTTTGAAAGAATATGAACCAGAAGTAGCAAAGGTCTTAAGACAAAACAAATCAGGAATTCAGAGAATAAAAGCAAGGGATTTGGTTCCAGGAGACATAGTAGAAGTTGCCGTTGGTGACAAAGTTCCAGCTGACATTCGTATAACATCGATCAAGTCAACAACCCTTAGAGTAGATCAATCCATTCTAACAGGAGAAAGTATTAGTGTTATTAAACACACAGACTCAATCCCAGATCCAAAGGCAGTCAATCAAGATAAAACTAACATGCTATTTTCTGGCACAAATATTGCTGCTGGAAAGGCCACAGGTGTAGTGGTTGGGACTGGTTTGAATACTCAAATTGGGAAAATCAGGGACGAAATGGTTGACACAGAGGAAGAGAGAACACCTTTGCAGCAGAAACTAGATGAATTTGCTCAACAGTTATCAAAGGTAATCACAGTTATTTGTATTGCAGTATGGGCCATAAACATTGGTCACTTCAGTGATCCTGTTCATGGGGGCTCCTGGTTAAAGGGAGCTGTCTATTACTTTAAGATAGCTGTTGCCTTGGCAGTAGCAGCTATTCCAGAGGGACTACCCGCTGTTATAACAACCTGTTTGGCCTTAGGTACACGTAGGATGGCCAAGAAAAATGCTATTGTTCGTAGCCTCCCTTCTGTGGAAACGCTTGGTTGTACATCAGTGATTTGCTCAGACAAGACAGGGACCTTGACAACTAACCAAATGTCAGTTCACAAGGTCTTTATTTTGAATGAAGTAAGGAGGGATCATGCTACTTTCCATGAATTTGAGGTGGAAGGCACAACTTACGACCCAGTAGGAGATGTAACATTAGGTGGAAGGAGAATTAATACACAAGATTTTGAAGCTTTGCCAGAATTTGCCACCATCTGTGCAATGTGCAATGATTCAAGTGTGGACTACAATGCTGTCAGAGATGCTTATGAGAAAGTGGGTGAATCTACAGAAACTGCACTGACAGTCTTAGTTGAAAAACTCAATGTGTTTGGTACAAATCTGGTTGGAATGTCTAAGGCTGATCTGGCAAATACATGTAATAATGTCATCAAATCGCATTTCAGCAAGGAATTTACACTGGAATTTTCTCGGGACAGAAAATCAATGAGTGTTTATTGTACTCCTATTGCTGATGGACCAAACTCTGTTCATGACAATAAACCAAAAATGTTTGTTAAGGGAGCTCCTGAGAGCATCATTGAAAGATGTAATTTTATGAGACTGGGTAAAAGCACGCTTCCTTTGATAGCAAAAACTAAGAAGCAAATTATGGAACTTGTTAAACAGTATGGAACAGGGGCAGACACACTCCGTTGTTTAGCTTTGGCAACAGTGGATGAACCTATTCCCCCAAGTGAAATGGACCTTGAAGCATCTGAAAAGTTTGCAGGTTATGAGAGCAACATGACATTTGTTGGTGTAGCAGGCATGTTAGATCCCCCCAGAAAGGAAGTTAAGGATTCCATTGAGAAATGCAGAGGTGCAGGAATCAGAGTCATAGTCATAACTGGTGACAACAAGGGAACAGCTGAAGCTATCTGCAGAAGAATTGGCATTTTTGGACCCGATGAGGATACAACAGGTTTGTCATATTCAGGCCGTGAATTTGATGATTTAACACCAGAAGAGCAGAGGATGGCTTGTTTAAATGCAAGATTGTTTTCACGAGTTGAACCATCTCACAAGAGCAAGATTGTTGAATATCTTCAGGCTGATGGTGAAATATCAGCCATGACAGGGGATGGGGTCAATGACGCACCAGCACTGAAGAAAGCCGAGATTGGAGTGGCCATGGGGTCTGGTACAGCTGTGGCAAAATCTGCTTCTGAAATGGTATTGGCCGATGACAACTTTTCCACCATTGTAGCAGCTGTAGAAGAGGGAAGATCTATTTATGATAACACCAAGCAGTTTATTCGCTACTTGATTTCCTCAAATATTGGAGAAGTTGTTAGCATTTTCCTGACAGCTGCCCTTGGAATGCCTGAAGCACTCATCCCTGTGCAGTTGTTATGGGTAAATCTTATGACTGATGGGCCTCCTGCCACAGCACTAAGCTTTAATCCTCCAGATGTAGACATCATGATGAAGCCGCCACGCAAGGCAAAGGAAGCTCTTATAAGTGGCTGGTTGTTCTTCAGATACTTGGCCATTGGAATCTATGTTGGTGTTGCTACTGTTGCAGCCTCCGCTTGGTGGTTCATGATTTATGAAAATGGACCAAAGGTGTCTTATTATCAACTAACACATCACATGCAGTGCACCACTGATCGTGCAAACTTTGATGACGTAAACTGTGAAGTATTTGGTGATCTTCATCCAATGACTATGGCACTCTCAGTGCTTGTTACAATAGAAATGTTCAATGCTCTAAACAGTTTGAGTGAAAACCAGAGCTTGTTTGTGATGCCCCCTTGGCGGAACCCTTCTCTTATAACAGCCATTGCTGCTTCATTTATCATGCATTTTGTCATTCTCTATTTTAAGATAACAAATACGATTTTCCGTATAACACCTCTAAATTGGGATGAATGGGTAGCAGTTCTTTACTTCAGTTTCCCTGTTATCATATTGGATGAAGTTCTCAAGCTTTTCTCCAGAATTATAGCTGAACCTTCCCATCCATCTCCAAAAGCAAAAGTGAAGTCCAACTAACAACTGAAAGAGGCATGCCGGTCGTGCTTGCTCCGATGTGTGCAATAATTCAGGCTCATGACTTTGGAAATCTGCATCTCGGGCATCCCTGGAGTTGCCATTATTGCAGCTAGAGCTTTGCACCATTTTAAAAAGATGTTAACCTTTTATTATCGATAAATACTGGGTTTATTTTTAAGCTGTCGCTTGGATGAAATTGTCCATGATAAAAATGAGAGTATGGTTCCTGGTTTTCTCTTGTCCTCATGAGGTAGCTTGGGATGATTTTGTTGCATTTGACTGGTGCACGCTTTTGAAGAATGCAATAACACTGTTACTACGGGCTATACAATTGACTAAAATGCTAAATAACTTGCTGTGTGCTGTTCATAAAATTCCTCCCCTTGAGGCATTTGCACTTGGCCTTATATTCTACGTAGCGACTTGCACTTATTTATTTAATCCAACCTATGAAAGGCAAAATTCCGTGGAAATTAAGACGAAAGAATGATCCTCACTCATTCTTCCGTTCTTGTTATTACATTTATTACATCTGTTATTTGCACTTCTTTTTACCATTCATTTCTTTTAACAAAATTAGTTATTATAGTTACTATCTTCATTAGGCAAGTATACATTTGAAGTTATCTTTAACTTGAACATTGTTCGCATCTAATGTGGCTCAGAATAAATACAGCCGAGAGTGGTACTGTATTCACAGAGAATGAAAGCACTTTCAGGatatttgtaattataagagagattaagcatgacgtttacggcaaacagcaagatgaaattttctttttaccaaaataaggagaaagttgatttaagctcttttcttgtctgttacctaaacatatcgagtaacttctcaagagtgagacaagttgaaaaacgttaattttcatgcttttatgacgcgcagctgcctactgtttgctgtttgccgtaaacgtcatgcttaacctctctaCAGTTCCAAGGAACCTTGTTTCAATACAGGATTCAGTGCGATAACTTTGACACCGGTATTTTACCAGACGTTTAGTGCCTTTTCTTGTTTGAGTTGGGCCAAGCATCAACTTGATCTGCGCAGATTTTAGGTACTTTGTTTTCTTTGTACCACACACAAAAAATATGAACTTGACCTTAGAACGCAAGTAGCAATGTAATGAAGACTGTGAACACTGTTGTAAATGACATTTTCATCTAACATTTTGCGTTTAGAAATGAACATATTCTTTTTATAAGGGAAGCTGGAGATTCAAAATGCAAAAAAAAAAAGATAGGAGTAACTTAACACCTTTTGGAGTCATTTAACGATGTCACTGTGCGAATATTTAGCGATGAACCTCAAGAGAGTTTTTCTGTTTTACTTTTTATTTTTTTGTTTATGTCAAGAACAACTTTCACTCCAGTGGAAAATCTATTCAGAAATTACAGAACTAATTGTTAATTGTTTATTAATCTTGGGTCGatatatatatatatatatttctataattatctaATCAACGCACAGGGCGATAATAACCATCTCAATTTAAGTTAAATGGAGATAAGAATCCTTGCTTCACAGGGATTGGTTGGTCACTGGCTTCAAGTGGTATCTAGTTTACGCAAGTGTCGACCATCTTCATAATTTAGCGCGCGCGTGCTTGTTTTCCGCACTCTTAGTAACTTGAGAAGACTCATTTCTGCAGTAGGGCTCAACACGCGCTATTCCTCTCGGCATGTGCACTCCGTTCTTCAGCTTTAAAACAGATTGAGATTGGCCTTACATATtaaagaaaattgggatagctgacgggaattgcatgtcgaagctatagcctctgccacacaggtgcagtgccataccggttgagctatcatacgcacttgaagctgaccgttacgtaggtccacCCCGCTTTTCAGGCCTTTCTCTCCCTATTGCttaaagtgc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22700	Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila melanogaster OX=7227 GN=SERCA PE=1 SV=2
Q7PPA5	Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Anopheles gambiae OX=7165 GN=SERCA PE=3 SV=5
P16615	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Homo sapiens OX=9606 GN=ATP2A2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001630 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF00690 all species →	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR004014 all species →	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR005782 all species →	Family	P-type ATPase, subfamily IIA, SERCA-type	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42861 all species →	CALCIUM-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005388 all species →	Molecular Function	P-type calcium transporter activity	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0015662 all species →	Molecular Function	P-type ion transporter activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05853	ATP2A; P-type Ca2+ transporter type 2A	EC:7.2.2.10	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.