Gene detail

Detailed information of amic_s0018.g4.t1 in Acropora microphthalma

Genomic Location: sc0000018_pilon:31784...37845
NR annotation: XP_029194324.1, protein phosphatase 1D-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0018.g4.t1

TTTAAACGAACTGCCAAATTAATCAACAGCTGCCTGTTGACAAAAAATATGAAATTTTCATGAGAGCGGGCAAATTACAAATTCCTTGCTGACGGTTCAGCATCTTACAACCAACAAAACACCGTACGATTAAAATTCAGTCAAAATGTCCAAGAAAACGAAGAGTAGGAAGATAATAGTTCGGGTGAATGGCCAAGCGAACCAGGGAGGACGCAAGGAAATGGAAGACTTCAAACGCGTCGTATTTGATCGCGACCCAGAACAAGCATTTTTCGCTGTTTTCGACGGACACGGCGGACGAGACGCGGCAATCTTCGCACGGGATAATTTATGGGATAATATTAAGAAGCAGAAAGGATTCTACGCAGGTGACACGGCACGCGTTATAAAGGCTATAAAGGATGGCTTCCTTATCACGCATCGACACATGTGGAAGCAACTCGACTCGTGGCCGCGGACCAGACACGGACTTCCGAGTACATCCGGGACAACAGCGACAGTAGTAATATTAAAAGGTAGAACGCTCTATATAGCTCATGTGGGCGATTCCGGAGCGGCGCTTGGGCGGCTGAATAAGGAAAGAAAACTGCAAGCCGTACCTCTAACCGCCGATCACAAACCCGACGTTCCTTCAGAAAAGAGTAGGATCGAGTCACTCGGAGGAAAGGTTCTTTCTCGTAATGGTGTGCCACGTGTAGCGTGGGAGAGACCCGTCCATCATGGCCATAAGGGACCTGTCAGAAGGAGCACTGAGAGAGAGTCGGTGCCTTTCCTGGCTATTTCAAGAGCacttgGGGATCTGTGGAGTTTCAACTACTATCGCAATGAATTTATAGTTTCACCAGTTCCCGATATCCGTGTTTACAAGATAACACCTGGGATGGAAAAGTTTCTGGTTATTGCATCAGATGGATTGTGGGGAGTGATGAGAGTCGAGGAGGTGGTTAAATTTGTTCACAACTTTGATAAAGACGACATCTGCAATCTGGGAGACGTTTCTCACAGGTTGATTCAGCGAGCATTAGCGAGATGGCGAGAGAGAGATTTGAGGGCTGACAACACAAGCGTTATTGTTGTCCACTTTGATGAAATAACTCAGGACGAGCCTCCTATGAAAATTCCTCGACTTGACAAGACACTCAACGAAGAGGAAACGGAATCAGAAACCAAAGAATCAACAGACTCTTCCCAAGCCAGTGACAAAACGCCAAATCAAGACTCTTTGTTCAATCAAAAGCCTGCTCTTGTCAGGAAACTAGCATTTCGTTGCTCGAATCCAATAATTTCGCTTAAAAACGAACACGCCGTCGTGACGGAGGCTGGGAGGCAGGGAATTGAGTTAGAGAACATAAGCGTATAGAGGCCCTTGCAGTTGATGAACTGTATCCCAGATTGTGGGAGGGCGAAGGCTTATCCCAATCTCCCCTCCAAACATGTTGAACCCAAATGCGCAAATTTCAAGGAACTAACTTAACGCCAATCAACCTTCAGTAATCTCGTATTAAGACGAAGGGCTTTTTCACGCATCACGACAAATAACGAAACTTTTGCGACCGGGAGCCACACAAATGCAACACAAATTGTTACTGATAACATGAATGTCTATCTTTCATGTAAGGAAAAAAAACGAGTGATTTATGCGATTAGTACTGGGCGAGATGAAGTCAAAAATATGTATCTTGCTGTGCTCGTCAGAATTGGCAGCGGCTTTTAATTCGATTAGGTGCCTAAAACTTGGCACATTACATGCATCCTTTGAAATGCAAAGAGAGAATGCCAAAAATTAATGCGATTATTTAATTATTTATTAGCAAATAACTGTGTGGCAGGACCAAGAAATAAACATATAAAACATCATTTCATATATTTGATGTTGTGAGTGAATCAGCACCCGTCGCAAAAATTAAAATAATTAACATCCTATAACAGTCACAACACTCAAAGCAAAGTTCCGAGGAACAACGAAAAGGACAAGATTTCGAGGAAACGAACCATCAGCCCCCACATTCAAACTAATTTTACTGATACGCCGAAACGCTCATTTTACGAATTTGGTCATAAAACTAGAGGACGTGTCACACTGAAAGCGAAGTAGATCATTCAAAACCACGTGTACTGACGTAATGCATACATGCATAATTTCAAGTACGGATTGAAACTGTTTCAGTGGTAACGACCTTCGCGGTTATGATCGCTACttaaagtgcccacgacacgaaattttttatcatcttactcgaaagtgctttcaaaatgaagaatggcgttaacttgattgtgatagcactcttgcttgccgagttattccaggttttgatttatgcaaattagattacttgcgacgtcacagtgttgacacagatgtgaaatcacaaaatacggattatctgtgcaaatgtttgaagtttacagggttgatgtactgcaggactacacattttggcagtggttatgatgacaccatagcaacataccagaattctaccactctaaaatgaaatctgtcttatttgttgctccagagtttaacagactcccttgtgcttgtgctgtataatgtccatattcgctcacacccactgaatgaacaacaagagcaaataatacttcttgagggaggaaaactttgactttcaccattgaatagagagggcctggagcccattgtgttcctatggaaatgtcacagtgaacatatcatggaactttgtgacgagtgtaacaactatactaagtttcagttctatacagataaagtcgtgagattttcacatcactttgtgttcacgctatgacgtcaaaagtaatataatttgcataaatcaatatcttggataacttggcaaccaagagtgctatcgcaataacataaacgccattctccatcactttgaaagatcttccgaataataaaataaattcgtgtca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15297	Protein phosphatase 1D OS=Homo sapiens OX=9606 GN=PPM1D PE=1 SV=1
Q9QZ67	Protein phosphatase 1D OS=Mus musculus OX=10090 GN=Ppm1d PE=2 SV=2
A0CUB5	Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia OX=5888 GN=GSPATT00010582001 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003903 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481 all species →	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015655 all species →	Family	Protein phosphatase 2C	Interproscan
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR000222 all species →	Binding_site	PPM-type phosphatase, divalent cation binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47992 all species →	PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0035970 all species →	Biological Process	peptidyl-threonine dephosphorylation	Interproscan
GO:0045814 all species →	Biological Process	negative regulation of gene expression, epigenetic	Interproscan
GO:0051019 all species →	Molecular Function	mitogen-activated protein kinase binding	Interproscan
GO:0043169 all species →	Molecular Function	cation binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10147	PPM1D, WIP1; protein phosphatase 1D	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.