Genomic Location: sc0000018_pilon:265786...268820
NR annotation: XP_015757449.1, PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families
| CDS |
| amic_s0018.g40.t1 |
| Transcript |
| amic_s0018.g40.t1 |
| Protein |
| amic_s0018.g40.t1 |
| UniProt accession | Description |
|---|---|
| O44437 | Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster OX=7227 GN=SmD3 PE=1 SV=1 |
| P62318 | Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1 |
| P62320 | Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008765 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01423 all species → | LSM | LSM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001163 all species → | Domain | Sm domain, eukaryotic/archaea-type | Interproscan |
| IPR010920 all species → | Homologous_superfamily | LSM domain superfamily | Interproscan |
| IPR047575 all species → | Domain | Sm domain | Interproscan |
| IPR034099 all species → | Family | Small nuclear ribonucleoprotein Sm D3 | Interproscan |
| IPR027141 all species → | Family | Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23338 all species → | SMALL NUCLEAR RIBONUCLEOPROTEIN SM | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0000387 all species → | Biological Process | spliceosomal snRNP assembly | Interproscan |
| GO:0005681 all species → | Cellular Component | spliceosomal complex | Interproscan |
| GO:0000243 all species → | Cellular Component | commitment complex | Interproscan |
| GO:0005682 all species → | Cellular Component | U5 snRNP | Interproscan |
| GO:0005685 all species → | Cellular Component | U1 snRNP | Interproscan |
| GO:0005686 all species → | Cellular Component | U2 snRNP | Interproscan |
| GO:0005687 all species → | Cellular Component | U4 snRNP | Interproscan |
| GO:0005689 all species → | Cellular Component | U12-type spliceosomal complex | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0034715 all species → | Cellular Component | pICln-Sm protein complex | Interproscan |
| GO:0034719 all species → | Cellular Component | SMN-Sm protein complex | Interproscan |
| GO:0071011 all species → | Cellular Component | precatalytic spliceosome | Interproscan |
| GO:0071013 all species → | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| GO:0097526 all species → | Cellular Component | spliceosomal tri-snRNP complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11088 | SNRPD3, SMD3; small nuclear ribonucleoprotein D3 | - | DNA replication proteins | ko03032 | deepkoala |
