Gene detail

Detailed information of amic_s0018.g78.t2 in Acropora microphthalma

Genomic Location: sc0000018_pilon:585443...592298
NR annotation: XP_029194338.1, nucleoporin 88-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0018.g78.t2

CAAGGAAATTTGAAATGGCAAGAACGCTTTCCTAAACACGCTATTTTTAGAGAAATTTCACAGACAGTAGTCGAAGAGAAAAGCTCACTTACAGGAGATTCTCAGTGTAGAACAATTAAGAACATTTTGATTGAAAATGATGGTGAAATATTTGTGTGGAATTCCCATCGAAAGGTCTTGCTGACAGCAAATCTCAAGAACTTGCATTTTCAAAATGAACGTGCAGACAAATTTCAAACTTTCGTTTTCACCGATGGTCCTTTGCATGATGTGGATTCCCTGCTATTCAGTTATTCGTCAAAGTATCTTGCACTAGTTGGTCAAAGAGGATTATCAGTTGTTGAAATACCCACAAGATGGGGCAAGTTTTCTGCATATGATGGTGGAAATGAAGAGGTTTTGTGCAAGAAAATTTCCATTGATTCAAGATTCTTTGTTACATCTGGTAAAATGATTCTTGATGCCAAATGGCACCCTGGAAGTCAGGCAGATGTTCATCTAATGGTTTTAACCTCAGATAACAATTTAAGACTTTATAATGTGCTGAAACCAGCTTCTCCAGAAGAAATAATTCCCCTGGGAGAGGCATCGTCACAGACAGCTGAATACAGCAGGAAGTCTATGTCTCTGGGATCAATCTCGTCATTTGCTGAAGCTTTAGGAGAAAGAGTCATTTCATTTGACTTTGCCCCTCCTGTTGCTGATGTTTATGCCACAACAAGGTCAAGATCATCTGAGACAGATCAGGAAGTTGCTTACCCTGTCTTTGTCTTGAAAGAAAATGGTGACATCTTGTACTTTAATCACAGAATTTTGCAAAGAAGATATTGGCCAACACAACTAAGTGGACCACTGACTATGTACCCAGCTGCAGATGATAATTATGGTCTGGATGCTTGCTCTTTGCTTTGTCTGCATTGCCAACCTCCTGTTCTTGTGATGGCAACAGGAAGCAGAAAAATTTATCACTGTATTGCTTTGGAAAATGAAAAATCTCATGATAGTGAGCAGGATCTATGCTCTTGGAATGGATTCTCTGGTACTGAGAAAAGGGACAGCTTACAACCAGATTTTTCTCTCTACGTTCATGAATGTGTGGAGCTACAGTTATCTCTGTTACCAGAAACTTTAGAATCACAATCTGAAATAAGTTCTTTTGGTGATGATTTGGATGGAAATGAAAATCAGTTTCTTTTAAAACTTCAGAAAGATCCATCTTCACCATATCAGTACCACTGTTCACATAGCACTGGAGTTCATAGTATATCCCTACCTTGGGTCAGCAATTTACAAGGGTTTTGTGTTCAAGAAGACCAGGGTGATTTTGATCCCGATGAACCAGCCATTGTACATCATATGATTTGTACATCACCAACAGCTGTCAGCCCACCATCTCCACCATTGGGTGTTTGCATCGTGAAAAGCAGGGTACTTGGTTCATCAATACTGTGTTTGTCTTCAGATATGAAATGTATTGTGAAGCCTCTGAGTTTACTTAACAGAGCGCCATCCCCTCCAACAGTGGAACAAGATGAAGAGACAGTTTATCAAAATAGTGCTGGCAGTTCACCCATACGTCACTTGAATGTAGGTTTATTCAAAACTGAAATTCAGAAGATGTTAACAAGAACTGAGTCAACTCCACTGTTAAGAGCTACTGAAGCATCTAAGAAACTCCCTGCACAAGAGTGTTTTCGGCTCCTCGCCCAAGCACAAGAAATGTTGCGGAAAGAATACATTCAGAAACAGTACAGGGCTAGGGAGGAGATAAACAAAAGAACATCATTACTTAGAAACGAAAAGGAGAAGCAAAAACAGCTTCTTGAGAAACTCCAAGGCCGTGACAAAAAGTTAAAGGAAAAAACAGAGATGCTTGGAGAAAAGTTGGTATATACATCAGAAAGGCATGAGGAGCTCTTACAAAGACTTGAAGGCTTGTTTAGATATATTCAAAATGGCACTCCAGTGTTATCTCAGGCCGAAAGTACGATGAAAAGGGAGTTGGAGGATGTGGAACGTTTTCTCAAATACCATAGAGAATCACTTCAACAGATTAAAGCAAAGAACTCCTACTCACAAAAGAGCCCAAGAAAATCAAAATCACCAAAGTCACCAGCTGTTAATGCATCACAAGAAAGAAACATCAGACACTTACTTAAAAGCGAGAATGAAATGATCACTGATCTGGTAAATCAGGTCAAAGACCTACAGCTACAAGTTGGATTGTAATGACTGAGAAGGAAAAGACGCAGATATGTGAAATAATTCTATCAAGGAAACAACAAGATGGCAGTTCTGGTGGCCCCCCATTAGCAAAAAAGTGCCCAACCAGTTTCCCTGCCTTTCAGGGTCAGACATTAAATTATGTGTTTGTTTAGTGGACTATATTGGGATTTGGTCAGTTAAAACAAAACTGTTTACCACTTTGTTTTGAGGTCTCTGACAACATGAATAGTTTCCATTTGTTGATTGGGTTGTCAGTATGCAGGTAATTTTACATCATGGACAACAAAAAATGTGAAAGTGAATGTGTATGATTAAAATAACATTAATAATAAAAAATCATTTAGTTTCTTGCAGGTAACATGATTTTGATCCCAGTAACGTCATTAAAGGGATGTTGGGTAATGTAAAAATTATTCATAAAATTATCAAATTTAAGCCCCAAAGAAAATAGAATTAATATAAAAAAATCACACCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08658	Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=10116 GN=Nup88 PE=1 SV=1
Q99567	Nuclear pore complex protein Nup88 OS=Homo sapiens OX=9606 GN=NUP88 PE=1 SV=2
Q8CEC0	Nuclear pore complex protein Nup88 OS=Mus musculus OX=10090 GN=Nup88 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004306 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10168 all species →	Nup88	Nuclear pore component	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037700 all species →	Family	Nucleoporin NUP88/NUP82	Interproscan
IPR019321 all species →	Family	Nucleoporin Nup88	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13257 all species →	NUCLEOPORIN NUP84-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14318	NUP88; nuclear pore complex protein Nup88	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.