Gene detail

Detailed information of amic_s0018.g82.t1 in Acropora microphthalma

Genomic Location: sc0000018_pilon:655742...664888
NR annotation: XP_015769190.1, PREDICTED: serine/threonine-protein phosphatase 4 catalytic subunit-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0018.g82.t1

GACCAAGGATTGCGCGCGTCGTTCCTCAAAACATGGCGGCTATGAAGGAGTACTAGATCCCGGTTATTGGATCTTTTTTGGTGCGCTAAGTCGTTAAACTAATCGATGTTTGACAAATAGCGAAAGCTTAAGCTTTTAATTACATACAAAGCTTTTGTTGTTTGTTTAAATCGTTTCCTGATCATCACAGGCTTCGACCGGTCGCCTGCATTTAAGTTAAGTCTCAAGTATATTTTTCGGAAAGTAAGGAACTTTGAAACATATACTCTTTAAGAAACGAGTAAATCAACTTTCAATCCACGATAGCAAAGGAAAATGACGGATTGTAGCGATTTGGACCGCCAAATTGAAAAGCTAAGGCGGTGCGAGCTGATTACTGAGAAGGAAGTGAAACAGTTGTGTGCAAAAGCGAGGGAAATACTGGTAGAAGAGTCCAATGTCCAAAAAGTGGATTCACCAGTTACTGTTTGCGGTGATATTCATGGACAGTTTTATGACTTGAAAGAACTTTTCAAGGTTGGTGGAGATGTGCCAGATACCAACTACCTTTTTATGGGAGACTTTGTGGACAGAGGCTTTTACAGTGTAGAAACATTTCTTTTATTATTAGCTTTGAAGGTGCGATATCCTGACAGAATAACGTTAATCAGAGGAAATCATGAAAGTAGACAGATAACACAGGTTTATGGATTCTATGATGAATGTCTTAAGAAATACGGCTCCATAACTGTATGGAGATACTGCACAGAGATTTTTGATTACCTCAGTTTGTCAGCTATCATTGATGATAGGATTTTTTGTGTTCATGGTGGGCTTTCTCCATCCATTAGTACATTAGACCAGATAAGAGCAATTGATCGAAAGCAGGAAGTTCCTCATGATGGCCCCATGTGCGACTTACTATGGTCAGACCCAGAAGATACACAAGGATGGGGAGTGAGCCCTAGAGGAGCTGGCTACCTCTTTGGTAGTGATGTGGTAACTCAGTTCAATGCAGCAAATGATATTGACTTAATCTGTCGAGCTCATCAGCTGGTTATGGAAGGTTACAAATGGCACTTCAATGAGACAGTCCTCACAGTATGGTCAGCTCCTAATTACTGCTACAGATGTGGGAATGTTGCAGCCATTTTAGAGTTGGATGAGCATTTAAAAAGAGAATTCACAATATTCGAAGCAGCGCCACAGGAGGTGAGAGGTATGCCAACTATTTCTAAGAATCCACAGCCAGATTACTTCCTTTGAATCTGCCACAGAAGTGTTCTTGGTCATTGAACTTTTTTTGGAGATTTCCTTTCCTCTAAGCCACCGTTCAGCTATTAGGTGTGGATACTTCAGTCAACCGTGGGATCCGAGATATTGAGCATTGCACAGACGTCGAATATAGCTTGCAAGGCAATACAAATGGCTTTCGAGAACACAAGCATAACTACATGGTGGTCTTAAAAGAACAATAATTGATAGGCCTtttgtagttttgtttttcttttttatatttagttttGGAAAAAGAAATTCATAGTTACAATTAGGAGATAACTGTATAAACTTGATTATTTGGGCTAACATTGTATATACCATACACTTTTATAATTCAAGTGAAAACATTAATTTATTTTACAAATAACTCAGTCATATGTTTTGCTTGTGGGAAAAGTGCCTCCTGTTGAAAGACTAGAGTCTAGTTTTGATTTTCTGCCTAGCCTCATACGCTCTATTGTTTTAAATGCAAAATGCATTATCTTCGATCCTTTTGTTGTTATCTAAGTCAATTATAAAACGTGTTCGAGTTTAGTACAGGAAGTGAAGCCATGCTTGAAAGACTTCTGAGTTTCTTTCGGGGAAATATTAATTTTTGAAAATCCCATCTCGATTCATTCTTGTTGTGAAGACTTTAAGAATAGCTAAGTGATGTCACTTCATTGGTAAACAAAAAAAGCCTGAAGGGTAAGTTATCTCGCGATACGCACGAGACGGGCAACACGTCTCTCGAGGCGATACAGTGGTCTCGCGAGAAGGAAGTAACTTACTTTTAAGTGTACGGATTACTGGTTAAATAAAACTTATTTCTTGTAATAAACGATGTGATCGTCAGCTCGTGATTATTGCTCCAAAATATAATGAACAGTACATTTTCAATCAGCCTTTACGTTTAGTCATTTCAGTTTTAATTTTAATTAAATTTTCTTTTGCGTTCTTGTTGCGTTATATTTCTCTTTGCCAGATAAAGGAAAAAAAGAATACAAATAAATTTGTTGTCAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9JRC7	Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio OX=7955 GN=ppp4cb PE=2 SV=1
A6H772	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Bos taurus OX=9913 GN=PPP4C PE=1 SV=1
P60510	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens OX=9606 GN=PPP4C PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000468 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006186 all species →	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR047129 all species →	Family	Serine/Threonine protein phosphatase PP2A-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45619 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0018.g82.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.