Gene detail

Detailed information of amic_s0018.g85.t1 in Acropora microphthalma

Genomic Location: sc0000018_pilon:694409...702722
NR annotation: XP_029194195.2, uncharacterized protein LOC114960111 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0018.g85.t1

ATGGCATTACGATTGCACAACACAAGGATGTTAGAAGATCACAACACTTGCTTCAGTTTTGTCTTTGAAGACTTTCCTAGCATTGGAGCAAGTGTATACTCCAAGCCGTTCTTTTTTGCCTCTTCCAAATGGCGTTTCCAAGGCGGTATCAAGGGGGGAAAGTTCGGTGTGTTTTTACGGTGGCTGGGCGGAGGCCAGCACACTGACAAAGTAAAATGCAAGGTTCGATGCACTGTAGAAGTTATCAATACCATGGATCCGTCAAAGTCTGTAATTGCTGGAAATGCCAACGACGAAGACGAGTTCCCTAAAGTTGGTTTCGGAATTGGCTGGAGTTCCTTAATACGAACAGAGGACGTTCTGAAGGTGGATTCAGGGTTTTTGGACGAGAATAACTTGTATGTTGAGATTAAGTGTTCACTTGTGAACATTGTCTTTGAAGACAAATTGGTAATAAATCTCTCATCTCGCACAAGCTATGTCACCAGCTCAAAGTTTTCCTTGTGTGATGAAGAATGGTATCTGGTGTTGTACCCGAAAGGAGAACCAAAAGGCAACAGTGAACAAAATGCTGACTTCGCGGCTGCGTACCTGCACAGGGAAGAACCTTCAATGTTGCGATTTAAAGTCAACTACTCAATTTACGTACGAGGAGGCCGCGAAGTGGAAATCACTCACCATTTCTGCGACACTAGCGCCAGCACAGCGTTTGGCATTGAGAAGTTTGTTCGCACCAAAGATCTTAAAGCTATCTCTAAAGGAGGCATGATAACCCTTGGTGTCAAGATCACAAGCATCCAGCCTTACTATTACTTCGGTTTTGACACCAAAGACTGGTCCCCACCCAACATCATGGGGGCTGAGTGCCTCATTGATGACGTGTCACCCTATGCTTTCAAACCAAGCACCAGTGACAAGAAAACCCTGGATTTTAGCCTGATCTTTGATCCCAAGAGCAAGCACAAAGATTTTGAAGATAGTGCGTATTATATGAAGACTTTGTGGAGTGTTCGTTTGTTCTGCTTCAAGGATGACAACAGAAGCGTTCTGGTGAACTCTTGGGATGTTCTTGGTAAGAGTGCATTTTGTTACAGTCAAGATGAGAGGGCCATGAACACAGCTTTGGAATTAAATGAGGTATTAAACCCTCACAGCCCCTATTTGGATGATGAAAAACATCTGTGTGTTCAGTTGGTGATAAAAAATACCAATGAAGTTTATGATCCTTTGTTAATTAACTCGGATAAACACAGCATCGCAAAGCTGAGGGAAATGAATGCACAGGCAAAGGCTGCGGTTGAAAACTTTTGGAAATTTCAACTTGAAAACGTGACTTCAGAAAAAGATCAGCGACTGGCAGATAAAGATGAGGAGATAGCAGCCAAGCAAGAGGAACTAAAGCAGAAGGAACAAGAAATCCAAGCGCTGGAGAATGAGATCAGCGAGAGCAATGAATACTTGGCCGAGATCGAGAGTACTGTGGATGAGATTGACGGCAAGAAAGTAAGCAGCATTAAAGATCTTGTCCAAGAAGCTAAACCGGAAGAAGAGCAACTTAAAAAACAGAAGGAAGTCGTGGACAAATTAACTGCATTTATGATGGAACAACTGCCATTTAGCGTCAGCCGTATTTCAGTGGTTAGTAGCGCTGGGCAGGACACAATCATCAATGGAAACCAGGAAGTGGACTTGGCAGTGTTCGTGAAAGACCTTCCCAGAACAGAGCACAAGAGTTGGTTGCCGGCAATAGTTTTCACTATCAAAACACTGCTAAAACAAGAAGTATCCAAAACTCCTGACAACAGAGACGACGAAGAGCGTACAGTCAACAAATTGCCACCATGTTCAGACTTTATCACTACTCAGACAACTGTTCAATTCAAATGTGATGGCGTTGATGTTACTCTCATACCAATCAACGATTGGGAACCAATGGGAGGGTTCACAGCATTGTACAAACAATGCGTGAGTCAACCAGCAGATGCACAAATGTTTTACAATGTGGCTGTCTGCGAAAGACAAACTGAATTTATTTTCAGGCAGAATCCAAAGTGCAAAGATCTGATTCGTATTGTTAAGAACTGGAGTAATGCTGTGCCTTGGCGCAATGCATCATCAAAACCCAGCCATTATTTACTGTCGCTTTTAGTCACAGCTGCTTATCAAGTGGTTAATGAGGGTAGTGAAACTGAAGCAATCAGAGCAGATAAGGATGTGTTCTTGGAACTGGCAGACATGGTTGGGGATGAGTCATTGGAAGTATTCTGGAATGAATATTACCTGGCTGATGAATATCCAAGGGAAAATTACCCAATTCCATTTACAACACCACTAGTTCAGGATCCTGCCATCCCCACACACAATGTTGCATCTGCTGGACTTGAAGACTGGGCCCAGTTCAGAAGAGAGCTGTCAAAATGGGTTGCAAAATTAACACTTTAG

Transcript

amic_s0018.g85.t1

AATAATTAAAAACCACCGAAGCCAGTAGCGTCTCTCTGCAGGTTTCCAAGCTGAGCATCGTTGAAAGAATGGACCCTGCAACGCCAGAAGAAACGCCGACTCCAACCTGCTGCATTGCAGTGTGTTTTGAACGGATAATTACAAAATTGATCGAGTCGACGCCCAGTTACATGTATTTCATCCTCGCGGCTGACGGCTGAGCCACAGattattattatttttattattattaAATAGTTTACGATTGTTGTTTTGCTTCAAACACGAAGAAAAAGCTTTTAGAAAGTGATGCGTGCAAGTTAATACTTGTGAGCCAAAAATCGTTGACGATTCGACGTCGAGATGGCATTACGATTGCACAACACAAGGATGTTAGAAGATCACAACACTTGCTTCAGTTTTGTCTTTGAAGACTTTCCTAGCATTGGAGCAAGTGTATACTCCAAGCCGTTCTTTTTTGCCTCTTCCAAATGGCGTTTCCAAGGCGGTATCAAGGGGGGAAAGTTCGGTGTGTTTTTACGGTGGCTGGGCGGAGGCCAGCACACTGACAAAGTAAAATGCAAGGTTCGATGCACTGTAGAAGTTATCAATACCATGGATCCGTCAAAGTCTGTAATTGCTGGAAATGCCAACGACGAAGACGAGTTCCCTAAAGTTGGTTTCGGAATTGGCTGGAGTTCCTTAATACGAACAGAGGACGTTCTGAAGGTGGATTCAGGGTTTTTGGACGAGAATAACTTGTATGTTGAGATTAAGTGTTCACTTGTGAACATTGTCTTTGAAGACAAATTGGTAATAAATCTCTCATCTCGCACAAGCTATGTCACCAGCTCAAAGTTTTCCTTGTGTGATGAAGAATGGTATCTGGTGTTGTACCCGAAAGGAGAACCAAAAGGCAACAGTGAACAAAATGCTGACTTCGCGGCTGCGTACCTGCACAGGGAAGAACCTTCAATGTTGCGATTTAAAGTCAACTACTCAATTTACGTACGAGGAGGCCGCGAAGTGGAAATCACTCACCATTTCTGCGACACTAGCGCCAGCACAGCGTTTGGCATTGAGAAGTTTGTTCGCACCAAAGATCTTAAAGCTATCTCTAAAGGAGGCATGATAACCCTTGGTGTCAAGATCACAAGCATCCAGCCTTACTATTACTTCGGTTTTGACACCAAAGACTGGTCCCCACCCAACATCATGGGGGCTGAGTGCCTCATTGATGACGTGTCACCCTATGCTTTCAAACCAAGCACCAGTGACAAGAAAACCCTGGATTTTAGCCTGATCTTTGATCCCAAGAGCAAGCACAAAGATTTTGAAGATAGTGCGTATTATATGAAGACTTTGTGGAGTGTTCGTTTGTTCTGCTTCAAGGATGACAACAGAAGCGTTCTGGTGAACTCTTGGGATGTTCTTGGTAAGAGTGCATTTTGTTACAGTCAAGATGAGAGGGCCATGAACACAGCTTTGGAATTAAATGAGGTATTAAACCCTCACAGCCCCTATTTGGATGATGAAAAACATCTGTGTGTTCAGTTGGTGATAAAAAATACCAATGAAGTTTATGATCCTTTGTTAATTAACTCGGATAAACACAGCATCGCAAAGCTGAGGGAAATGAATGCACAGGCAAAGGCTGCGGTTGAAAACTTTTGGAAATTTCAACTTGAAAACGTGACTTCAGAAAAAGATCAGCGACTGGCAGATAAAGATGAGGAGATAGCAGCCAAGCAAGAGGAACTAAAGCAGAAGGAACAAGAAATCCAAGCGCTGGAGAATGAGATCAGCGAGAGCAATGAATACTTGGCCGAGATCGAGAGTACTGTGGATGAGATTGACGGCAAGAAAGTAAGCAGCATTAAAGATCTTGTCCAAGAAGCTAAACCGGAAGAAGAGCAACTTAAAAAACAGAAGGAAGTCGTGGACAAATTAACTGCATTTATGATGGAACAACTGCCATTTAGCGTCAGCCGTATTTCAGTGGTTAGTAGCGCTGGGCAGGACACAATCATCAATGGAAACCAGGAAGTGGACTTGGCAGTGTTCGTGAAAGACCTTCCCAGAACAGAGCACAAGAGTTGGTTGCCGGCAATAGTTTTCACTATCAAAACACTGCTAAAACAAGAAGTATCCAAAACTCCTGACAACAGAGACGACGAAGAGCGTACAGTCAACAAATTGCCACCATGTTCAGACTTTATCACTACTCAGACAACTGTTCAATTCAAATGTGATGGCGTTGATGTTACTCTCATACCAATCAACGATTGGGAACCAATGGGAGGGTTCACAGCATTGTACAAACAATGCGTGAGTCAACCAGCAGATGCACAAATGTTTTACAATGTGGCTGTCTGCGAAAGACAAACTGAATTTATTTTCAGGCAGAATCCAAAGTGCAAAGATCTGATTCGTATTGTTAAGAACTGGAGTAATGCTGTGCCTTGGCGCAATGCATCATCAAAACCCAGCCATTATTTACTGTCGCTTTTAGTCACAGCTGCTTATCAAGTGGTTAATGAGGGTAGTGAAACTGAAGCAATCAGAGCAGATAAGGATGTGTTCTTGGAACTGGCAGACATGGTTGGGGATGAGTCATTGGAAGTATTCTGGAATGAATATTACCTGGCTGATGAATATCCAAGGGAAAATTACCCAATTCCATTTACAACACCACTAGTTCAGGATCCTGCCATCCCCACACACAATGTTGCATCTGCTGGACTTGAAGACTGGGCCCAGTTCAGAAGAGAGCTGTCAAAATGGGTTGCAAAATTAACACTTTAGTTGCATAGTTATTGTATAATTCCCATTACTCTGTGGGCATTGCAAGGTCAGGGAGAGGGAATTTCACTTAATGCTCAATCTGCTTTGAACAATCATGTCAGTCCAGGAAAAGAAATACTTAGAAATGTGTTTAATATCCACTGCCACATTTATCACCCCCTACCCTTCTGAAAAAGGAATAGAATCAGGTGACAAAGTTGTTAAATTTAAGCATAACTACAAACTTTTATCAGGCTACTGTGGACAGTGTATTTTTTCTTGGTGTTAGGGTTTTCATCTAAGTGTTAATGAATATTAATTAAATTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00917 all species →	MATH	MATH domain	Domain	Interproscan
PF10421 all species →	OAS1_C	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR018952 all species →	Domain	2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11258 all species →	2-5 OLIGOADENYLATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001730 all species →	Molecular Function	2'-5'-oligoadenylate synthetase activity	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0060700 all species →	Biological Process	regulation of ribonuclease activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0018.g85.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.