Gene detail

Detailed information of amic_s0018.g97.t1 in Acropora microphthalma

Genomic Location: sc0000018_pilon:767519...777883
NR annotation: XP_029194265.2, F-box only protein 21-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0018.g97.t1

gtctttccagttacactgatcagcgcggcgttaacttccatagaaacgtataggtttcgttacttcctaaccaaaggttagcggtagccatgctttcaggaactggcccctgaTCGATTGTACAAAGAAGCACGTAAAAAGTCCAATAGACGCTGGTTCTCGGAGACTGGGCTCTTGTAAACATTATGGCGGACGAGGCATCGGGGAAAACATTGGATATAACTTTGCTTGTGTTAGCTGACGAGCTGATCGACATGGTGCTTTCCTATTCCTTCATTGATCACAGGGATCTATGCCGTTGTGCTAAAGTTTGTAAAAGATTAAATGTTATCGCAACTGGAAACGAATTGTGGAAAAAGAAGGCACTTTCGAGGTGGAACGTTTGGAAGACAATTCCAAATGAAAACTGGATGATTGTTTTCAGACATAGATTGAGCATGGAGAACAAAGTAAGGCTTGCCCTGCAGGCCACAGCTTTAAAACATCACAATAAGATTGAAGTGTCCAAGAAAGACCTTGATGGTTTTGTGCGTTTGAAAAACGAAGAACCTTCTCTTTGTTGCTATGTGGAGGATGCATTGTGTGAAATTTTACAGGAAGATGTGtgCAAGGCAAATCTGACCCACAGATATTATGCAAAAAAGGTGCAATCACACCTGAAAATCCACCAACTCAAGTCTGAGTGGGAGACATATCTTGCATTACCTGATGGCCAAAAACAGCTCGAAAAAGGTGCCATGTTGATTGTTAGATGGATTCTAAATGAGGATGACATAGATGAGCAAGTCATATTTTCTGAACTTGACAACATTGCACAAATGGTGCAAGAGAGTCTGTGTGGAAATGAAAGTAGCATTAGGATTGCAGTGCCAAGCACAATGGAAGAGAGGATTGCAAGAACTGATGCAGCTAATCCAGTTGTTATTCATCCTGCAGCTTGCCTGAGATTACTGAATTCCCTCAAGCATGTTTTATATCAACAGTTACATTTTAAAGGAAATGTTGATGAGTATTATAAAAAAGAAAACTCACTTCTTCATGAGGTGTTAAAGAATCGTTATGGTAACCCCATTACTCTGTCAATCTTGTTTATTGCTGTTGCCAAAAGACTTGGAGTCAGCCTTGAACCTGTGAATTTTCCCAGCCATTTTCTGGTGCGATGGAAGGCTAACCAGGATCCAGAGGCAGCTGATTCAACTGCATTCAAGTACATTGACTGCTTTAATGGCGGAAGATTTCTGTCAGAGGAACAATGTCTGGAGATGCTTTACATGGGAAATCTAGGTTTTAACAGTCATGGGTTTTTTGAAAAAGCTACACCAAGACAGGTATTCATTCGCATGGTGGCCAATATCATTAACAGCTACAGGACATCAGGGCAGCAAGATAACAGCAGGTTATTAGGACTGCATTCTGCCCTGAATCTTGCACTGTTCCTTGACCCTAAAGATGAGGGAAGTCGATTTCTTCTTGCACGAATACAAGTTCACCTGGAGATAGATTTAGAGGAGGCAATTAAAAGTTGTCAGGAGTTACTGAACAGTGGTACTTCAATTGATCGAGAAGTTGTTGAGAGCATGCTGGAACGGGCCACTTTGAAGAAAGCTAAGGAGGGTCTTGAGGAGAACACTCAAAAACTTAGATCTGATCCAAGAAATTCTGAAGTGAGATTTAAAGTTGGAATGGTTATGAGGCATAAGTTGTACAATTATGGATGTGTTATCTTTGGTTGGGATCCAGTATGTAAAATGGATGAGTTATGGATTCAACAGATGGGTGTTGATAATTTAACTGGTGGCAGGAATCAACCATTTTATAATGTTCTTGGAGATGACTGCACACAAAGATATGCAGCACAAGttaatttaaGAGAAGATGCCAATCAGCCATTCAACCCACATCCACAAATAGGAAAATTCTTTAAACATTTTAATGGCACATGGTACACACCAAACGAGAGTCTACAGCAACACTACCCTGAGGACGTGGAAGATGCAGATGGATGAACCAAACTTGAGTAAATAGCTGTACTTATTTcagggtttcaaccctgacctctatgataccagggcagtgctccactagttgagctaGTCATTAACAATTGATTTGATTAATGATTCCTTTATTAACTGTCACCACTCATGGTCCCTTTGAGAAAATTTGCCAAGACATTTGTGGCCTCTTCAGCTGTATATTAGGGAGTTTAAgcaacagcaacgataacaccagaaaaaaatgatctgattACCCTATTTActactaagtgatacatggaatttccaaatataaggttctagcaacaagggaaacacatggcagtataatctttcattctctacaaattttacttcaatggcactacattattttgtactgaattttccaacagcatagaatgtgagtaaggagcaaataatagcaaagtgtagaaaaaatatttactgtattttcaatgcatattttgactgtcctagttgctgctttaactcactCTCTGCCTTGTAACCAGGCCTATTTTTGCATTTTGTAATAATTATTATGCCAGAATTTTCAGAAAGAAAAAAAAAACACTACTGTTAGAAAACCTTATGCAACAAAATAGACTGGTGGTGAAAGGATTCACTATTACAAACTCAATTTCAAAGCAACAAGATTGTTGTATCATTTTAGCTAAATTTATTATTATTAAAATTTAAAATTTGGCCATAATGACAAGACTGTGAAAATAAAGGACCCAGTGGGCTAGATGTCCAGAAGAAAACCAACCCATACACAATTTGTGTATGTTTATCATATTGtaataatgataataataataataatGACAataattattattagtatttaccaaatcagtggatagtaattttcgagcgttttgattggctcccgtaactcggaatatccttggctattcactgttttgcgaacagagagaaaaatggcgcgttgttttgcgaaagtttcagaagaagaaattgaagaagtgtttttttatccatctgatttggtaaatactaaaacaACTATCCCCCTCAGGGTCGGTGAAGAGCGGTGGATATATACCTCGACGCTTCGCGTCTCGGTATATATCCACCACTATTCACCTCCCCTTCGGGGAATAGTTGTATATTATAATTATTATTATCATCATCATTAGTATCTGAAAAAAAAGCATTCATATTGCTCATTGCAGAATACCATCAGTGCTAGTGGCCAGGCCATAACAAAATGACCATGAGCCCATAGGTTACTTCCTTCTACAACTTGCCTTAGGATATACACTGTTCTAAGTTTTTTTGCACTTTGCCAATATTTGCATCAACCCATAACTTTTCCAACCAGTTTTCAAACCTTTTTTGTCACAAAGCCAAGCACTCCAATCACAACGGAAACCACATTTACCAATCTCATCTGCCATTATTATTATTGTAATAATAACTATTATTATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R5S1	F-box only protein 21 OS=Pongo abelii OX=9601 GN=FBXO21 PE=2 SV=1
O94952	F-box only protein 21 OS=Homo sapiens OX=9606 GN=FBXO21 PE=1 SV=2
Q8VDH1	F-box only protein 21 OS=Mus musculus OX=10090 GN=Fbxo21 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006508 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13369 all species →	Transglut_core2	Transglutaminase-like superfamily	Family	Interproscan
PF08755 all species →	YccV-like	Hemimethylated DNA-binding protein YccV like	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032698 all species →	Domain	Protein SirB1, N-terminal	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR011722 all species →	Domain	Hemimethylated DNA-binding domain	Interproscan
IPR036623 all species →	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31350 all species →	SI:DKEY-261L7.2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10301	FBXO21; F-box protein 21	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.