Gene detail

Detailed information of amic_s0019.g100.t1 in Acropora microphthalma

Genomic Location: sc0000019_pilon:1077673...1090419
NR annotation: XP_044173668.1, LOW QUALITY PROTEIN: protocadherin Fat 4-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0019.g100.t1

ATGATTTCCTTGAGTGTTCAGGTATTGAGCGTCTTGTTCTCTAGTTTCCTTGGTTTATCAAGCACAATCAACCCAGAACCATTCATTATTTTTGGCAACACTGTGGACATTCGTAGAGTAAATCTTGATGGTACTGGTTACAATTATGTCGTTCAAGGCTTAACCAATGTTGTTGGTGTTGACTTTGATATAAAAACACAGACAATCTATTGGTCTGACATTGCTCTGAAGAAAATTCAAAGAGTTCATATTGACCTTGGATTACAACCTGGGAATATTGAAGATTTTGTAGTTGAAAACATAGGAATTCCTGAGGATTTGGCAGTTGACTGGATGGGAAGGAAACTTTTTTGGACAGATGCAAGTTTCAAAGTCATTGAGGTTATTCATCTCAATGGGACACAGCGGCAAGCACTCATAAGTACTGGTCACGACAAGCCAAGAGCTATTGCTCTTGATCCTTTGAATGACAAATTGTATTGGACTGACTGGGGAAGTGAACCAACAATATTTCGTGCAAAAATGAGTGATGGATCACAGAAAGAGGTACTTGTGAATTCAGGCATTGAATGGCCAAATGGAATTGCACTGGACTATGTTACCAGCAGGTTATTCTGGGCTGATGCAAAAACAGACAAGATAGAGAAATCTGACACTGATGGTCAGAATCGCAGAGTTCTAATTGATCGCACTGGTGTTTATCATCCTTATGCATTGACTCAATTTGGTGACCGCATCTATTGGACTGATTGGCAACGTCACAGTATTGAACACTGTAACAAGGATAGAGGAAACGATAGGGTTACAATTACAGGTGGTATGACCAGACCCACAGCTTTACATGTTTATCATCCTGACAGACAACCAGGAGCAGATACAAATGAATGCTTGACAGGAAATGGAGGATGCAGTCACACTTGCCATGATACAATAAGTGGATATCAATGTCATTGTCATTTGGGATTTGAACTTGGATCTGATTTTAAATCATGTCAAGATGTAAACGAGTGCAGCTATAATCGTGGGGGCTGTGGACAGCTCTGTATTAATTTTCCTGGAAGTTACAACTGTTCTTGCTTACCAGGTTACACCTTGCAGATTGATAATGTAACATGTGAAGATGAAGATGAGTGTCGGGTTGACAATGGGGGATGTGAGTTTAGCTGCAACAACACAGAGGCCTCCTATTACTGCATGTGTCGTTCTGGCTACATACTAGCAGCAGACAGACATTCTTGTGAGGATATTGACGAATGTCACACACTTGCACACCGTTGCCCAGGTCAATGTAAAAACACCCCAGGTTCTTATGTCTGCTTGTGCTCATTGGGTCACACCTTCAATCCACTAACAAAGACTTGTGATGACATTAATGAGTGTGAAACCAACCAACATTCCTGTGAACAGAGTTGTGTGAACACAGAAGGAAGTTTCTATTGTAAATGCAACCCAGGATTCCTCCTAAACAGTGACCAGCTTACGTGCACAGACGTTGATGAGTGTAGTCAGGCAAATCATTCATGTCAGCATCATTGCGTGAACACTCTTGGTTCTTTCGTGTGTAGCTGTCATGCTGGGTATAGATTGACAGTTGATGGACGGACTTGTGAATTGGTTGATTGTGGAGAACCTGAGGGAATTGAAGGGATTGGAGTGAGGTGCACTGGTTCTAAGGATCAGTACAGGTTTAACAAGGTTTGCTCGCTTGTATGTACCACTGGAATTTTGATTGGTCCAAGAGTGATCACGTGCCAGGCATCTGGACAATGGACTGTCATCTCTGCACAGTGCATAGCTCAAGTCCCAGGCTCCAACAATCCGCCTCGGGGAATCTTACTGTCTTCGTCCTCTGTTCCAGAAAACTCACCTCACAGTACTTTGGTGGGTAGACTAACCACAGTGGATCCTGATGAAGATCAGTTCTTTACGTACTCTTTGATTGATGGAGCTGATGTTTTTGCCATAGACAATGGCACTGGGATGTTAATAGTGGTGGGTGACTTGGATTACGAAACTCGATCAGTGTACACAGTGAAGCTTGTGTCTACTGATAGTGGTGTACCGCAGATGTCTGTTATTCAAAACCTAACTTTGTGGGTCACAGATGTTAATGAACCACCCAGTGCACCAACCTTATCCCCGTCAAAGATCTACGAAAACGCCTCTGTTGGATCTGTAATCGGTTTCCTTAACTCTTCAGATGTTGACGCTGATCAAGAAATTTCTTACTCTCTGATTTCTAATGGTGGAGATAAATTCAGGATCGTTGGTCAACAGTTACAGCTGCAGTCGACACTGAACTATGAAGAAGTATCAAGTTTCAGTATTACAGGAGAGGCTAAAGACGATGGCTTCCCAAGACAAGCCACTGTATCGTTGCTGAATATTACCGTTATGGATTCAAATGACCCTCCAACCATGATCATATTTCATGGGGGCATAATTAAGGAGTACACCAAACAGAGTTCTTCAGGAACACGCAATGGGTCCGTTATTGGCAACTTCTCTACTGTGGATGAAGATATCGATCAACATCACGTCTATTCAATCTTAGGAGACAGCGACATCTTCACCATTAACCAGTCGCTATTAATATTAGCATGGGCTGAGAAGTTAGACTATGAAACACGCAGTCTTCGGACACTACTCATACGCTCAACCGATCCGCTGGGAGTCAGTGTTACGTCTTTGATCGAGATTCACCTTCTGGACGTCAATGAAAATCCCACTGGTATTCTCCTGTCTGCGGATTCTCTCCTCGAGCATGCGTCTTTAAATACCACCATCGCTTCCTTGAGTGCGCGCGATCCAGACCTTTGCGATAATCACACTTTTGAGCTAGTGATTAATCCAAACGAGACATTCTCGATTTACGGCAAAACTCTAAGAGTTGCAAAGGACGTCGACTTCGAAACAATTAGAAATCCGCTTGTTATTCGACTGATAGCTGCTGACAAAGGTGGGCTTTTCTTTGAGCAAAGTTTCAACATCACCGTTCTGGACAAGAATGAGCCACCAACAATGATCGTTGTCTCCGCAAGAAAAGCTTGTGTCTCATCAGCCGCGCTATGCGTTGAAGAAAACGAGCAGATTGGCTACCACGTTGCTGATGTCAAAATGGAAGATCCAGACAGAGGTGATTCTGGGCAGTGCGATGTGGTGAGCGATGATGTTTTGAGAATTGAAAGCGGTGCTTTGCTCGTCAATGGGAAAATAAACTACGAGGTATTGGACAGCTCGCGTGTGATTCAAGTTGAGATAAGATGCAGAGACAAGGGAGGGTTAACAATCCAGGCAACATTTGACGTCAGTGTTATAGACGTGAACGATCCCCCTACATCTGTTTCCTTGTCACAGTCGATTGTAAGTTCGAACGCCTCAGTGGGCAGTCTTGTTGGGACTTTCAACGTCGTTGATGAAGATAAACAAGATTTTCATTTCTGCTACCTCATGAATCCGGATAGTTTGTTTAGAGTCGACGGTATTCATCTTTTTGTTAAAAGACCGCTTACCAACGCCACATCCTTCCGCCATCCAATTTACGTTTTTTGTTCCGATAGTTATCTTGTCAGTGTTCCTACTGTGCTCTATGTCGAAGTGCGAAGCAACCTGTTGTTGTCGCAAGTTAATGTCTCACTGAATTCAACACAAATAAAGGAAAACGAGCCTGCGGGCAGTGTCGTTGGGCGTGTCACAGCGAGGACCTCCAATGCCAATGACTCCTTATTACTTCAGCTCGATGATGATGCTAACGGAACTTTTGCTATGGTCACCAGAAGTGCTGTAAATGCGAAAGACCTTGTTACTACCCGGTCATTAGACTACGAATTGGAAAACCAGTACCGAGTTGTTATTCGTGTTTATGGTAGTGGAGGAGCCACGAATTTTCAAGTGTTTACCATTCAAGTAATTGACGTCTATGAACCTCCAGAACACCTGATACTGCATCATGACCACGTGAGTGAGGGCCTTACTGGTGCCTTGGTCGGTGTAATCACTCTCAAGGACCCACAGCTCAGCCACCTGTCGATTCAGCTCCTGTATGATCCTGACTCAGCTTTTGAGCTTCGTCCAACAGCCGTCCCTTACACATGGAAGCTCTTGACCAAACGCTCACTGGACTATGAGTCGGCACAGAGCCATCACATAGCGGTGCAAGTAAAGGATACCAAAAATTCCATGACTGTCAATCAAACATGTACCATTTACGTCACGAACGTGAACGAGGCTCCTTCGTCAATCGCGCTTAGTAACGGCGTGATCCCTGAAAATAGTCCACGTGGGACTGTGGTCGGGAATATAGGTGTAACGGACCCGGATGAACCGTACCTTCATCAAAACATTACTTGTGAATTACGAAATGACGCTGGTGGAACATTCTCGATCAGTGGTCTTTCTCTGACCGTGTTAGATTCCCGGATGTTGAATTACGAGGCCCCGGGTGGTCCGGATTATTTGATTGATGTTGAATGTCAAGATCAGGACGGAGAGGCAACCCAACAGCAGTTTACTGTGAAGCTGACAGATGTCAACGAGCCGCCAATCCGAATAGAGTCTTCCGCTGGCAAATTTGAGATTGGCGAGAATTTAAATCCTGGAGCAGTGGTTGCAGTGCTGAAAACAATTGACGAAGACAAGGGGCAAAGTTATTCTTACATCGTGGAACCGCACTCAGTCTTTACCATTGAAGGCGATCAACTGAAATCTCTTGTGAGATTTAATTATGAGGTTCAACATACTTATCACGTGAACATCAGCGTGACTGACAGTGGAAATGATACTTTGACTCAACTTGTTGTGATCAATGTATTGGATATGAATGATGCACCTTCAGGAATAGTGTTACCAAGTGGAATAGTAATTGCAGAAAATGCAAAGGCTGGCTTGCTTATTGGAGGGATGACGTCACTGGACGAGGACAGAGATCAGGAGCACAGTTACGTCATTCAAGCCCAGACCCCCAAAGGAGCTCTTTTCATTAGCGGTCGGAACAAGCTTTTTGTTAAAGATAATTCTGTACTTGACTTTGAGTTACACCGCCATGTAAATATCACCGTGACCACTACAGATAATGGAGCGCATTCGAAACTATCCGCAACTGTGACACTATCCATACCTATTGCGGACGTCAACGAGCCACCTTACGATATTCTGCTTGGCTCTTCCGATGTCAGAGAGAATTCTCCCATTGGTGCATTTGTGGGCGTGGTCACAGTGCTTGACCCCGACATCGCGAACCCTGCTCAGTGGTTTCATTGTCAGCTTCTTGATGACGCTGGCGGAAGGTTTGGAGTTATGATAAACACGTCTAAGATTGAGCTGTATTTAACTGGAAATGGACTCGCAATAAACTACGAGAAACACGCTTCTCATAACATTACCATGATATGCAGAGATAGCGGAGGACTCTCTTGCGTAAAAGAATTTTTAATCCAAGTTTTAGACGCAAACGATCCACCGTCTAACCTTATCTTCTCGGATTCACTTGGTGATACAATCTTGAATCCAAACCCTCCTGGTAATATATCAGATGTAAAGATTGTTTCCAAGGCAGTGGTAACTGTTAACGAGACTGCTGATGTAGGAATAACAATTGTAGCATACGTACATGTCATTGATGAGGATAACATTGACAATCCTCCACGGCCACAGACGCATGCGTGTCAGCTCGTGAGTCAAGCCGAAGCCCAGCTTCTTATCACTGTGGAAGCGCATGCCTCTCCTAACTCCAGGAGAAAACGTTCAATTGATGTGAGCAAGGTTCCTTCTGAATTTTTTATTCAACCAGGGACAAACTCTATCCTAGTCCGCCAGAAACTCGATTACGAAAGGCAAGCGAATTACACTCTTTATTTGAAATGCACTGACGACGGTGTTCCGAAGATGTCCACATACGCCTCTGTCATTGTATTTGTTTTAGATGTACCCGAACCACCAACCGATGTATTGTTTTCTGCGCGGAGGATCCGTGAAAACGCTTCTTATGGAGCCGTGGTTTGTAATTTCAAAGTAGTAGATGCCGACTTGTCGCTCATGGGTTACTCTTTTGAAATAACAACACGCGGTGTCCCCTTTCGTCTAATTGGACAACGCATTGTCGTCTCGCGTGTTCCGCTGGATCACGAGACTTCTCCGCTTATCACAGTGCGACTGACAACTCGCGAAGTGCTTACCACCTTAAAATTGGTTAAAACGTTTGATATTATAATCACTGATGTCAATGAAGCTCCAACCCGTGTAACGCTGGACGGAAAAACCGCCGTGACGGTTTTCGAGAATGCGCCAATTGGCTACGTGATCGGACGGTTTAAAGTGGAAGATCAAGACGTCAATGACACCGTGTTTTACATAACAATCCAAAGTGAAGAGAATGAGATAATCACAGATTTTAAAGTTTTAGAGCAAAATCTCGTTGTTGCAAGCCAGCTTAATTCTTGGTCACGTGATCGATATATTCTTAAGGTACAAGCTACTGACCCCGGAGGTCTGAGTACAGTGAATGTTTTGACTGTTCTGGTAAGCGAGGTTGACGTGTGTTCAATGAACCGAAGTTATTGCAGTGCGGATGCCACTTGTACTCGTGCGGGGCCTGGACAAGCCTCGTGCTCTTGTAAACTTGGTTTTACTGGCGACGGTTTTCGCTGTGATGACGTAGACTACTGCAATCCAAACCCATGCCACCGCAATAACACGCTTGGTGAATGCTCGGATGGCTTCGGCGGTTGGAAAAATTATACGTGCAACTGTAAGCCGGGGTGGTCTCCTCCTGATTGTGATGTAGAAATCAACGAATGTCGTGCGAACCCTTGCAACTTCACTGGAACAGAAAACTGCGAGGATATCATAAACGATTTTAAGTGTCGTTGTAAGCCAGGCTTTAGCGGTAGACTTTGTGAAACAAACGTTAACGACTGTCAGCCATCGAGTTGTCTGAACGGAGGCGCATGCGTGAACAAAGTTAACGGCTATATCTGCTTGTGTAAAGATCCTTATATTGGAGTCAACTGTGACACTGATGATACTGTTTGTCGGGAAAATCCATCAATATGTCCTCGTAACGGGACCTGCATTTCTTTCGCAGGAGATCCAACGAAGTACACCTGTCGCTGCGAAGTACCTTGGGGTGGAAATTGCTCCGGCTGCGCACCAGGTTACGGGGGACAAAATTGTGCCCCATGTCAATATCCGTGGACTGGAGAGAATTGTGAGTTGGATTGGAGAAACTGTCACCCTAATCCTTGCTTAGAAGGGGGTAGCTGTTATCCATTGAAAGATAAAGACTTCTTGTGCCTATGTCCTCGAAGCCACAAAGGAAAGACCTGTGACACCCCCACAGAGGTAGGCACCAGTGTTAGTGGGTCGCACACGGGACTGAGTGCTGCAGGTCTCTATTCGCTTATTGGTTGCATTGTTTTGTTGTTGTTGATCATCATCTTTATTCTGATTTTATGGTGGAGACGCAGAAGGAGAAAATATCGATCGAAGAATGCACGTGTTGAATATCATGCAAGACGCAAGAAAACCGTAGTGAGTTTGCCTTTTATAGAAATGATGACCAAAAATGAGTACACTTTTGAAAATCCTTCTTTTGTCGCTGAACCAATTGTGAGGGGAACATTAAAGATTCAAAATAGCGGTGAATACGGCCCCGGAAGGTTCAAAACGGTGGCTGCGGTGACAGAAATAAAAATCTCGGACAGTAAAGTTGCTATTGCCTGCGATAACCCAGTGTATGAATCAGCGGACGAAGTGTTACAGAAACACGCAGGCGTTGTACATAATCCACTATTTGCATATgaagaagaagaggaagaagaacaagaacaagaagagaaagaagaacaggaaggagaagaTGCTGAGGAGGATACAAGTTCGCGACTTTGA

Transcript

amic_s0019.g100.t1

AGTTGTGTTTCAATCTTCGTTTGTATTGAAGAATGATTTCCTTGAGTGTTCAGGTATTGAGCGTCTTGTTCTCTAGTTTCCTTGGTTTATCAAGCACAATCAACCCAGAACCATTCATTATTTTTGGCAACACTGTGGACATTCGTAGAGTAAATCTTGATGGTACTGGTTACAATTATGTCGTTCAAGGCTTAACCAATGTTGTTGGTGTTGACTTTGATATAAAAACACAGACAATCTATTGGTCTGACATTGCTCTGAAGAAAATTCAAAGAGTTCATATTGACCTTGGATTACAACCTGGGAATATTGAAGATTTTGTAGTTGAAAACATAGGAATTCCTGAGGATTTGGCAGTTGACTGGATGGGAAGGAAACTTTTTTGGACAGATGCAAGTTTCAAAGTCATTGAGGTTATTCATCTCAATGGGACACAGCGGCAAGCACTCATAAGTACTGGTCACGACAAGCCAAGAGCTATTGCTCTTGATCCTTTGAATGACAAATTGTATTGGACTGACTGGGGAAGTGAACCAACAATATTTCGTGCAAAAATGAGTGATGGATCACAGAAAGAGGTACTTGTGAATTCAGGCATTGAATGGCCAAATGGAATTGCACTGGACTATGTTACCAGCAGGTTATTCTGGGCTGATGCAAAAACAGACAAGATAGAGAAATCTGACACTGATGGTCAGAATCGCAGAGTTCTAATTGATCGCACTGGTGTTTATCATCCTTATGCATTGACTCAATTTGGTGACCGCATCTATTGGACTGATTGGCAACGTCACAGTATTGAACACTGTAACAAGGATAGAGGAAACGATAGGGTTACAATTACAGGTGGTATGACCAGACCCACAGCTTTACATGTTTATCATCCTGACAGACAACCAGGAGCAGATACAAATGAATGCTTGACAGGAAATGGAGGATGCAGTCACACTTGCCATGATACAATAAGTGGATATCAATGTCATTGTCATTTGGGATTTGAACTTGGATCTGATTTTAAATCATGTCAAGATGTAAACGAGTGCAGCTATAATCGTGGGGGCTGTGGACAGCTCTGTATTAATTTTCCTGGAAGTTACAACTGTTCTTGCTTACCAGGTTACACCTTGCAGATTGATAATGTAACATGTGAAGATGAAGATGAGTGTCGGGTTGACAATGGGGGATGTGAGTTTAGCTGCAACAACACAGAGGCCTCCTATTACTGCATGTGTCGTTCTGGCTACATACTAGCAGCAGACAGACATTCTTGTGAGGATATTGACGAATGTCACACACTTGCACACCGTTGCCCAGGTCAATGTAAAAACACCCCAGGTTCTTATGTCTGCTTGTGCTCATTGGGTCACACCTTCAATCCACTAACAAAGACTTGTGATGACATTAATGAGTGTGAAACCAACCAACATTCCTGTGAACAGAGTTGTGTGAACACAGAAGGAAGTTTCTATTGTAAATGCAACCCAGGATTCCTCCTAAACAGTGACCAGCTTACGTGCACAGACGTTGATGAGTGTAGTCAGGCAAATCATTCATGTCAGCATCATTGCGTGAACACTCTTGGTTCTTTCGTGTGTAGCTGTCATGCTGGGTATAGATTGACAGTTGATGGACGGACTTGTGAATTGGTTGATTGTGGAGAACCTGAGGGAATTGAAGGGATTGGAGTGAGGTGCACTGGTTCTAAGGATCAGTACAGGTTTAACAAGGTTTGCTCGCTTGTATGTACCACTGGAATTTTGATTGGTCCAAGAGTGATCACGTGCCAGGCATCTGGACAATGGACTGTCATCTCTGCACAGTGCATAGCTCAAGTCCCAGGCTCCAACAATCCGCCTCGGGGAATCTTACTGTCTTCGTCCTCTGTTCCAGAAAACTCACCTCACAGTACTTTGGTGGGTAGACTAACCACAGTGGATCCTGATGAAGATCAGTTCTTTACGTACTCTTTGATTGATGGAGCTGATGTTTTTGCCATAGACAATGGCACTGGGATGTTAATAGTGGTGGGTGACTTGGATTACGAAACTCGATCAGTGTACACAGTGAAGCTTGTGTCTACTGATAGTGGTGTACCGCAGATGTCTGTTATTCAAAACCTAACTTTGTGGGTCACAGATGTTAATGAACCACCCAGTGCACCAACCTTATCCCCGTCAAAGATCTACGAAAACGCCTCTGTTGGATCTGTAATCGGTTTCCTTAACTCTTCAGATGTTGACGCTGATCAAGAAATTTCTTACTCTCTGATTTCTAATGGTGGAGATAAATTCAGGATCGTTGGTCAACAGTTACAGCTGCAGTCGACACTGAACTATGAAGAAGTATCAAGTTTCAGTATTACAGGAGAGGCTAAAGACGATGGCTTCCCAAGACAAGCCACTGTATCGTTGCTGAATATTACCGTTATGGATTCAAATGACCCTCCAACCATGATCATATTTCATGGGGGCATAATTAAGGAGTACACCAAACAGAGTTCTTCAGGAACACGCAATGGGTCCGTTATTGGCAACTTCTCTACTGTGGATGAAGATATCGATCAACATCACGTCTATTCAATCTTAGGAGACAGCGACATCTTCACCATTAACCAGTCGCTATTAATATTAGCATGGGCTGAGAAGTTAGACTATGAAACACGCAGTCTTCGGACACTACTCATACGCTCAACCGATCCGCTGGGAGTCAGTGTTACGTCTTTGATCGAGATTCACCTTCTGGACGTCAATGAAAATCCCACTGGTATTCTCCTGTCTGCGGATTCTCTCCTCGAGCATGCGTCTTTAAATACCACCATCGCTTCCTTGAGTGCGCGCGATCCAGACCTTTGCGATAATCACACTTTTGAGCTAGTGATTAATCCAAACGAGACATTCTCGATTTACGGCAAAACTCTAAGAGTTGCAAAGGACGTCGACTTCGAAACAATTAGAAATCCGCTTGTTATTCGACTGATAGCTGCTGACAAAGGTGGGCTTTTCTTTGAGCAAAGTTTCAACATCACCGTTCTGGACAAGAATGAGCCACCAACAATGATCGTTGTCTCCGCAAGAAAAGCTTGTGTCTCATCAGCCGCGCTATGCGTTGAAGAAAACGAGCAGATTGGCTACCACGTTGCTGATGTCAAAATGGAAGATCCAGACAGAGGTGATTCTGGGCAGTGCGATGTGGTGAGCGATGATGTTTTGAGAATTGAAAGCGGTGCTTTGCTCGTCAATGGGAAAATAAACTACGAGGTATTGGACAGCTCGCGTGTGATTCAAGTTGAGATAAGATGCAGAGACAAGGGAGGGTTAACAATCCAGGCAACATTTGACGTCAGTGTTATAGACGTGAACGATCCCCCTACATCTGTTTCCTTGTCACAGTCGATTGTAAGTTCGAACGCCTCAGTGGGCAGTCTTGTTGGGACTTTCAACGTCGTTGATGAAGATAAACAAGATTTTCATTTCTGCTACCTCATGAATCCGGATAGTTTGTTTAGAGTCGACGGTATTCATCTTTTTGTTAAAAGACCGCTTACCAACGCCACATCCTTCCGCCATCCAATTTACGTTTTTTGTTCCGATAGTTATCTTGTCAGTGTTCCTACTGTGCTCTATGTCGAAGTGCGAAGCAACCTGTTGTTGTCGCAAGTTAATGTCTCACTGAATTCAACACAAATAAAGGAAAACGAGCCTGCGGGCAGTGTCGTTGGGCGTGTCACAGCGAGGACCTCCAATGCCAATGACTCCTTATTACTTCAGCTCGATGATGATGCTAACGGAACTTTTGCTATGGTCACCAGAAGTGCTGTAAATGCGAAAGACCTTGTTACTACCCGGTCATTAGACTACGAATTGGAAAACCAGTACCGAGTTGTTATTCGTGTTTATGGTAGTGGAGGAGCCACGAATTTTCAAGTGTTTACCATTCAAGTAATTGACGTCTATGAACCTCCAGAACACCTGATACTGCATCATGACCACGTGAGTGAGGGCCTTACTGGTGCCTTGGTCGGTGTAATCACTCTCAAGGACCCACAGCTCAGCCACCTGTCGATTCAGCTCCTGTATGATCCTGACTCAGCTTTTGAGCTTCGTCCAACAGCCGTCCCTTACACATGGAAGCTCTTGACCAAACGCTCACTGGACTATGAGTCGGCACAGAGCCATCACATAGCGGTGCAAGTAAAGGATACCAAAAATTCCATGACTGTCAATCAAACATGTACCATTTACGTCACGAACGTGAACGAGGCTCCTTCGTCAATCGCGCTTAGTAACGGCGTGATCCCTGAAAATAGTCCACGTGGGACTGTGGTCGGGAATATAGGTGTAACGGACCCGGATGAACCGTACCTTCATCAAAACATTACTTGTGAATTACGAAATGACGCTGGTGGAACATTCTCGATCAGTGGTCTTTCTCTGACCGTGTTAGATTCCCGGATGTTGAATTACGAGGCCCCGGGTGGTCCGGATTATTTGATTGATGTTGAATGTCAAGATCAGGACGGAGAGGCAACCCAACAGCAGTTTACTGTGAAGCTGACAGATGTCAACGAGCCGCCAATCCGAATAGAGTCTTCCGCTGGCAAATTTGAGATTGGCGAGAATTTAAATCCTGGAGCAGTGGTTGCAGTGCTGAAAACAATTGACGAAGACAAGGGGCAAAGTTATTCTTACATCGTGGAACCGCACTCAGTCTTTACCATTGAAGGCGATCAACTGAAATCTCTTGTGAGATTTAATTATGAGGTTCAACATACTTATCACGTGAACATCAGCGTGACTGACAGTGGAAATGATACTTTGACTCAACTTGTTGTGATCAATGTATTGGATATGAATGATGCACCTTCAGGAATAGTGTTACCAAGTGGAATAGTAATTGCAGAAAATGCAAAGGCTGGCTTGCTTATTGGAGGGATGACGTCACTGGACGAGGACAGAGATCAGGAGCACAGTTACGTCATTCAAGCCCAGACCCCCAAAGGAGCTCTTTTCATTAGCGGTCGGAACAAGCTTTTTGTTAAAGATAATTCTGTACTTGACTTTGAGTTACACCGCCATGTAAATATCACCGTGACCACTACAGATAATGGAGCGCATTCGAAACTATCCGCAACTGTGACACTATCCATACCTATTGCGGACGTCAACGAGCCACCTTACGATATTCTGCTTGGCTCTTCCGATGTCAGAGAGAATTCTCCCATTGGTGCATTTGTGGGCGTGGTCACAGTGCTTGACCCCGACATCGCGAACCCTGCTCAGTGGTTTCATTGTCAGCTTCTTGATGACGCTGGCGGAAGGTTTGGAGTTATGATAAACACGTCTAAGATTGAGCTGTATTTAACTGGAAATGGACTCGCAATAAACTACGAGAAACACGCTTCTCATAACATTACCATGATATGCAGAGATAGCGGAGGACTCTCTTGCGTAAAAGAATTTTTAATCCAAGTTTTAGACGCAAACGATCCACCGTCTAACCTTATCTTCTCGGATTCACTTGGTGATACAATCTTGAATCCAAACCCTCCTGGTAATATATCAGATGTAAAGATTGTTTCCAAGGCAGTGGTAACTGTTAACGAGACTGCTGATGTAGGAATAACAATTGTAGCATACGTACATGTCATTGATGAGGATAACATTGACAATCCTCCACGGCCACAGACGCATGCGTGTCAGCTCGTGAGTCAAGCCGAAGCCCAGCTTCTTATCACTGTGGAAGCGCATGCCTCTCCTAACTCCAGGAGAAAACGTTCAATTGATGTGAGCAAGGTTCCTTCTGAATTTTTTATTCAACCAGGGACAAACTCTATCCTAGTCCGCCAGAAACTCGATTACGAAAGGCAAGCGAATTACACTCTTTATTTGAAATGCACTGACGACGGTGTTCCGAAGATGTCCACATACGCCTCTGTCATTGTATTTGTTTTAGATGTACCCGAACCACCAACCGATGTATTGTTTTCTGCGCGGAGGATCCGTGAAAACGCTTCTTATGGAGCCGTGGTTTGTAATTTCAAAGTAGTAGATGCCGACTTGTCGCTCATGGGTTACTCTTTTGAAATAACAACACGCGGTGTCCCCTTTCGTCTAATTGGACAACGCATTGTCGTCTCGCGTGTTCCGCTGGATCACGAGACTTCTCCGCTTATCACAGTGCGACTGACAACTCGCGAAGTGCTTACCACCTTAAAATTGGTTAAAACGTTTGATATTATAATCACTGATGTCAATGAAGCTCCAACCCGTGTAACGCTGGACGGAAAAACCGCCGTGACGGTTTTCGAGAATGCGCCAATTGGCTACGTGATCGGACGGTTTAAAGTGGAAGATCAAGACGTCAATGACACCGTGTTTTACATAACAATCCAAAGTGAAGAGAATGAGATAATCACAGATTTTAAAGTTTTAGAGCAAAATCTCGTTGTTGCAAGCCAGCTTAATTCTTGGTCACGTGATCGATATATTCTTAAGGTACAAGCTACTGACCCCGGAGGTCTGAGTACAGTGAATGTTTTGACTGTTCTGGTAAGCGAGGTTGACGTGTGTTCAATGAACCGAAGTTATTGCAGTGCGGATGCCACTTGTACTCGTGCGGGGCCTGGACAAGCCTCGTGCTCTTGTAAACTTGGTTTTACTGGCGACGGTTTTCGCTGTGATGACGTAGACTACTGCAATCCAAACCCATGCCACCGCAATAACACGCTTGGTGAATGCTCGGATGGCTTCGGCGGTTGGAAAAATTATACGTGCAACTGTAAGCCGGGGTGGTCTCCTCCTGATTGTGATGTAGAAATCAACGAATGTCGTGCGAACCCTTGCAACTTCACTGGAACAGAAAACTGCGAGGATATCATAAACGATTTTAAGTGTCGTTGTAAGCCAGGCTTTAGCGGTAGACTTTGTGAAACAAACGTTAACGACTGTCAGCCATCGAGTTGTCTGAACGGAGGCGCATGCGTGAACAAAGTTAACGGCTATATCTGCTTGTGTAAAGATCCTTATATTGGAGTCAACTGTGACACTGATGATACTGTTTGTCGGGAAAATCCATCAATATGTCCTCGTAACGGGACCTGCATTTCTTTCGCAGGAGATCCAACGAAGTACACCTGTCGCTGCGAAGTACCTTGGGGTGGAAATTGCTCCGGCTGCGCACCAGGTTACGGGGGACAAAATTGTGCCCCATGTCAATATCCGTGGACTGGAGAGAATTGTGAGTTGGATTGGAGAAACTGTCACCCTAATCCTTGCTTAGAAGGGGGTAGCTGTTATCCATTGAAAGATAAAGACTTCTTGTGCCTATGTCCTCGAAGCCACAAAGGAAAGACCTGTGACACCCCCACAGAGGTAGGCACCAGTGTTAGTGGGTCGCACACGGGACTGAGTGCTGCAGGTCTCTATTCGCTTATTGGTTGCATTGTTTTGTTGTTGTTGATCATCATCTTTATTCTGATTTTATGGTGGAGACGCAGAAGGAGAAAATATCGATCGAAGAATGCACGTGTTGAATATCATGCAAGACGCAAGAAAACCGTAGTGAGTTTGCCTTTTATAGAAATGATGACCAAAAATGAGTACACTTTTGAAAATCCTTCTTTTGTCGCTGAACCAATTGTGAGGGGAACATTAAAGATTCAAAATAGCGGTGAATACGGCCCCGGAAGGTTCAAAACGGTGGCTGCGGTGACAGAAATAAAAATCTCGGACAGTAAAGTTGCTATTGCCTGCGATAACCCAGTGTATGAATCAGCGGACGAAGTGTTACAGAAACACGCAGGCGTTGTACATAATCCACTATTTGCATATgaagaagaagaggaagaagaacaagaacaagaagagaaagaagaacaggaaggagaagaTGCTGAGGAGGATACAAGTTCGCGACTTTGACAGCAAAGTGATCATCTCAAAATTTCTGAATCTTTCACCTGAGTAATGATAGGTAGTGTTAATGTCGAGATGCTGTTCGTTCCACTTGCTTCAAAATGGCAGTCGCAGCTGGGTAAACACAATCTGAAGCCTTAGTCAGTTTTTTCCCCTGTCCTGTCTCTGTGAGGATAAAGGGGAAATAAAGCACGGAAAACGTCTGCCATTACTAAGGCAATCCTTCTTCATTTAAGTCATAATTTGGCGAATTTACCTGAGGAAGCTAAGTACGCCAGAAAAGCCTGTTAACAGGTACAATTTTTGTCGAAGCAACTTAATGCAAATTTTATAGCTCATGAAAGCCCGTTACGTTTAGCGCTATTTTACTTCGATTTATCGCTGCGATATCGCAAAAACgggggctcaagggtttgcagcgatgcagtattgcgttatttttggtacggttttggaggaattcttatctgagcctacggtcttgcgctttcacaagactaataccaatttggtaaatttcgatgcgGTTTTTGTAAAGTTTTTTTGTGCGGTTTTTGCGCGCCCCCTCACGCCCTCTCCCCTCCGTAAACGATTAGAACTTGCTTGGAAGTCGCTGCAATaagtttaacttcgcttttctgtaattaattcttgattattctaagttgtttgacaagaaaagtgtgaagtattttaggatgaaattgtgtgataagtttggagagaagaaaaaagaaaaaatggtcctgaggtgttaatgtcgtccgcataactggaaaacaggttatttcaagtcgctgacaggacgcgaaacggctgcgaaatgtactaactgaaaaaggaaaaaaaagcaagttcaaagct

Protein

amic_s0019.g100.t1

MISLSVQVLSVLFSSFLGLSSTINPEPFIIFGNTVDIRRVNLDGTGYNYVVQGLTNVVGVDFDIKTQTIYWSDIALKKIQRVHIDLGLQPGNIEDFVVENIGIPEDLAVDWMGRKLFWTDASFKVIEVIHLNGTQRQALISTGHDKPRAIALDPLNDKLYWTDWGSEPTIFRAKMSDGSQKEVLVNSGIEWPNGIALDYVTSRLFWADAKTDKIEKSDTDGQNRRVLIDRTGVYHPYALTQFGDRIYWTDWQRHSIEHCNKDRGNDRVTITGGMTRPTALHVYHPDRQPGADTNECLTGNGGCSHTCHDTISGYQCHCHLGFELGSDFKSCQDVNECSYNRGGCGQLCINFPGSYNCSCLPGYTLQIDNVTCEDEDECRVDNGGCEFSCNNTEASYYCMCRSGYILAADRHSCEDIDECHTLAHRCPGQCKNTPGSYVCLCSLGHTFNPLTKTCDDINECETNQHSCEQSCVNTEGSFYCKCNPGFLLNSDQLTCTDVDECSQANHSCQHHCVNTLGSFVCSCHAGYRLTVDGRTCELVDCGEPEGIEGIGVRCTGSKDQYRFNKVCSLVCTTGILIGPRVITCQASGQWTVISAQCIAQVPGSNNPPRGILLSSSSVPENSPHSTLVGRLTTVDPDEDQFFTYSLIDGADVFAIDNGTGMLIVVGDLDYETRSVYTVKLVSTDSGVPQMSVIQNLTLWVTDVNEPPSAPTLSPSKIYENASVGSVIGFLNSSDVDADQEISYSLISNGGDKFRIVGQQLQLQSTLNYEEVSSFSITGEAKDDGFPRQATVSLLNITVMDSNDPPTMIIFHGGIIKEYTKQSSSGTRNGSVIGNFSTVDEDIDQHHVYSILGDSDIFTINQSLLILAWAEKLDYETRSLRTLLIRSTDPLGVSVTSLIEIHLLDVNENPTGILLSADSLLEHASLNTTIASLSARDPDLCDNHTFELVINPNETFSIYGKTLRVAKDVDFETIRNPLVIRLIAADKGGLFFEQSFNITVLDKNEPPTMIVVSARKACVSSAALCVEENEQIGYHVADVKMEDPDRGDSGQCDVVSDDVLRIESGALLVNGKINYEVLDSSRVIQVEIRCRDKGGLTIQATFDVSVIDVNDPPTSVSLSQSIVSSNASVGSLVGTFNVVDEDKQDFHFCYLMNPDSLFRVDGIHLFVKRPLTNATSFRHPIYVFCSDSYLVSVPTVLYVEVRSNLLLSQVNVSLNSTQIKENEPAGSVVGRVTARTSNANDSLLLQLDDDANGTFAMVTRSAVNAKDLVTTRSLDYELENQYRVVIRVYGSGGATNFQVFTIQVIDVYEPPEHLILHHDHVSEGLTGALVGVITLKDPQLSHLSIQLLYDPDSAFELRPTAVPYTWKLLTKRSLDYESAQSHHIAVQVKDTKNSMTVNQTCTIYVTNVNEAPSSIALSNGVIPENSPRGTVVGNIGVTDPDEPYLHQNITCELRNDAGGTFSISGLSLTVLDSRMLNYEAPGGPDYLIDVECQDQDGEATQQQFTVKLTDVNEPPIRIESSAGKFEIGENLNPGAVVAVLKTIDEDKGQSYSYIVEPHSVFTIEGDQLKSLVRFNYEVQHTYHVNISVTDSGNDTLTQLVVINVLDMNDAPSGIVLPSGIVIAENAKAGLLIGGMTSLDEDRDQEHSYVIQAQTPKGALFISGRNKLFVKDNSVLDFELHRHVNITVTTTDNGAHSKLSATVTLSIPIADVNEPPYDILLGSSDVRENSPIGAFVGVVTVLDPDIANPAQWFHCQLLDDAGGRFGVMINTSKIELYLTGNGLAINYEKHASHNITMICRDSGGLSCVKEFLIQVLDANDPPSNLIFSDSLGDTILNPNPPGNISDVKIVSKAVVTVNETADVGITIVAYVHVIDEDNIDNPPRPQTHACQLVSQAEAQLLITVEAHASPNSRRKRSIDVSKVPSEFFIQPGTNSILVRQKLDYERQANYTLYLKCTDDGVPKMSTYASVIVFVLDVPEPPTDVLFSARRIRENASYGAVVCNFKVVDADLSLMGYSFEITTRGVPFRLIGQRIVVSRVPLDHETSPLITVRLTTREVLTTLKLVKTFDIIITDVNEAPTRVTLDGKTAVTVFENAPIGYVIGRFKVEDQDVNDTVFYITIQSEENEIITDFKVLEQNLVVASQLNSWSRDRYILKVQATDPGGLSTVNVLTVLVSEVDVCSMNRSYCSADATCTRAGPGQASCSCKLGFTGDGFRCDDVDYCNPNPCHRNNTLGECSDGFGGWKNYTCNCKPGWSPPDCDVEINECRANPCNFTGTENCEDIINDFKCRCKPGFSGRLCETNVNDCQPSSCLNGGACVNKVNGYICLCKDPYIGVNCDTDDTVCRENPSICPRNGTCISFAGDPTKYTCRCEVPWGGNCSGCAPGYGGQNCAPCQYPWTGENCELDWRNCHPNPCLEGGSCYPLKDKDFLCLCPRSHKGKTCDTPTEVGTSVSGSHTGLSAAGLYSLIGCIVLLLLIIIFILILWWRRRRRKYRSKNARVEYHARRKKTVVSLPFIEMMTKNEYTFENPSFVAEPIVRGTLKIQNSGEYGPGRFKTVAAVTEIKISDSKVAIACDNPVYESADEVLQKHAGVVHNPLFAYEEEEEEEQEQEEKEEQEGEDAEEDTSSRL

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2PZL6	Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
G3V928	Prolow-density lipoprotein receptor-related protein 1 OS=Rattus norvegicus OX=10116 GN=Lrp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009872 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016339 all species →	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0034332 all species →	Biological Process	adherens junction organization	Interproscan
GO:0044331 all species →	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0019.g100.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.