Gene detail

Detailed information of amic_s0019.g102.t1 in Acropora microphthalma

Genomic Location: sc0000019_pilon:1092733...1100569
NR annotation: XP_015751291.1, PREDICTED: elongation factor Tu-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0019.g102.t1

TGATCATTTCAATCGCGGGCTCATTCTTTCCGACAGCGTGATTTGACGAAAAGTGGTGAAATTTCAGCAAAATATAACCCCTTGTATGCTAATATACGACTAGATATGTTTTCTATGTCGCTTAAAGGATTTAAGTGCCAGAAAGTTCTTTGTGAGGCTATAAAAGCCTCCCGATCGCTTCATCAAAATTCTGGACGCAATAATCTTCTTCTGCTAAGAAATGGAAGACAGAGTTTTGTATTTCAATTTCGGAACTATGCTGCACCTGCAAAAAAGGAAACCTTTTCTAGAAGCAAGCCTCATGTAAACATTGGAACTGTTGGTCATGTTGACCATGGGAAAACAACTCTCACTGCAGCAATCACCAAAGTTTTGGCTCAAGAAGGAGCAGCAAACTATAAATCATATGCTGATATTGACAATGCTCCAGAGGAGAAGGCTCGAGGTATAACAATCAACACTGCTCATGTGGAGTATCAAACAGGAAATAGGCATTATGGGCATGTGGATTGCCCTGGCCATGCTGATTACATCAAGAACATGATAACAGGAGCTGCCCAGATGGATGGAGCCATTCTTGTTGTGGCAGCTACTGATGGTCAGATGCCGCAGACAAGAGAACATCTCTTGTTAGCCAATCAGGTTGGTGTAAAGCATCTTGTTGTGTACATCAACAAAGCAGATGCTGTTGATGACACTGAAGTGTTAGAATTGGTCGAATTGGAGATGCGTGAAGTGCTGTCCCAGTATGGCTATGATGGAGACAACACACCCATCATAGTGGGTTCTGCTCTTTGTGCCTTGGAAGGTAGAAACCCTGAGATGGGTCGTGACTCTATCATTAAGCTCTTAGAATCTGTTGACGAGTATATTCCCACTCCAGCCAGGGACCTGGACAAGCCATTTCTTCTTCCCATAGAAGATGTTTTCTCCATAGCTGGGCGTGGCACTGTTGTGACAGGGAGAGTTGAAAGGGGAGTCATAAAGAATGGTGATGAGGTTGAATTTGTTGGACATGGGGTTAAGAGCAAGACCACTGTTACAGGTATTGAAATGTTCCACAAGATTCTTGACCGTGGGGAGGCTGGTGACAACCTTGGAGCACTGGTCAGAGGTGTTAAGCGGGAAGATGTGCGTCGTGGGATGGTGTTGTGTGCTCCTGGAACAGTCAAGTCACACACCAAGTTTGAGGCCCAGGTTTACATCTTGAAAAAAGAGGAAGGTGGACGACACAAACCATTTGTCTCAAATTACCAACCTCAGATGTACGTTAGAACGGGAGATGTAGCAGCCACTATCACCCTTCCTGAGGGGAAGGAATTTATCATGCCAGGAGAAGATGCCACCTTTACTATCTCACTCAAGTTTGATATTGCTCTGGAGCAAGGGCTCAGGTTTACACTGAGAGAAGGCAGTCGGACTGTGGGGACTGGGGTGGTAACGAAGATAATCGAGTAAGACACTAACCTTTCCCACCCTGGTAAATTACTCTTTCGATTGCTCCTCCTCCTTTCAAGCTTAAGTGATTTTCATTCTTCTTGTTTTAAGTGGAATTGGTGCGCTCCATTTCGAACTCTGGTTGTTTTCCGTTGAAGGGATTTGATTGTTTTCTGAAAGCGTTCAGGAAGCAAGAGTGAAACCCTAAATTCCAAGAACAATTCAAAAAACAAGTTACTCTGAGCGAGCGTCATTTCGCTGGAATCGGGCCAAACGAGATTCCATTCTGGCCATATTTAAATTGCATTGTGAGGCTTTTATCGAGGCTTTATCGAGGCTTAATCGATTTCGTTTTTTTTTTTCACGTGATTTTTGCCATTGCGCAAATTCGTTTTTCTTTTCTTTTTTTTTTCATATTAAAAACGACGTGCCAGTAAAATGAATTAAAAGAGAAATTCCCTGGAATCAAGAAGTTGTGAACTACATTCTTTTAGTCTTGCGCTTTGTCAATAAACCAATTTTCCGTTTTTGAGAAGTCACTTGGAGAATGCGTTGTCATCACAAGTGCTGCCCTAGGCTATGAAACAAAGATAAACGTGTTTTGTTTTAAGCATACTCGACTTGCTAACCACAGAGAAGGAGTTCGTATTGTTGCAAAAATTCAGACTTTACGTGATAAAGAGTAAACTGAAACCTAAAGCTATCCAGTCGGAAGGTACGAATTTTTCCGCTGTACTACTTGTTTGTTTAATTTTTTAACAATGTAAATTTACTAAACTCCTTATTCAAAGCGAGAAGCTTTCCCACTGATTGCAGATGTTAGTATATCGCTGATTTCCCTGTCTCAATTGTGCAAGAAGGCGAAGGGAATGACACGAGTCCGAATTCTAGATGACTTTTGAGACAGTAAAAGAATATATCTGATTTCACGAGCGGGTTATGAGCCAGAGGCTTCTGCAACCATTGAGGCGTCGAATAGACAGTGATACTTCTAGAAATCAATGCTTGAATGAAGCGCCCAGGGGCTTAGGTTAAAATGGAGATGGTTAATAAAAGGAGGAGAGGATATTTTTAACACAAAATTCGGATATCGATTATATCGAGTCTTGCTCTAAATCAATCAGTATTGGCTTAAGTTCGCTTTAATTTGGAGAAAGACATTTCTCTCAGGTCAATTGTTGAGCTTATAATGTTGATCTCTTTGGCATTCTATCAGCTATTGCTTTACAGAACACTGCCGAAAAGCTCGCAGGTCAAATTCTACATCATTTACTTTCTTTCTTCTATTTTATCGTGTTAGTGATACCAGCGAAAACAATTCAATTAGGAAGAAAATAAAGTCTAGAAATATCGCGATTGATACGATTGATATGTTTGTTTAAATGAAGTGCTAAGTGAAAGAGAAAAAGAGGAATACAAGTGTGATGTAGGAGTTACGGCATGACTAATTCGGCGTTTAGTACTGATCGAAATAATACTGAGCGAGTTCTCGTTTAAATAACTTGTCTAGATGGTGATTTACCTATGAATAGAAATATTATTCCAGTAATAATATTTAATAATTGTTGGACCGCACAAATTCTATAATTGGTTCTGAAAGAGCGCACAGTGACGTGTGTCAGCCAATATAACACGCTTCAATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8LLG2	Elongation factor Tu OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=tuf1 PE=3 SV=1
Q0ABH7	Elongation factor Tu OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=tuf1 PE=3 SV=1
Q0BUQ2	Elongation factor Tu OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=tuf PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03143 all species →	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004160 all species →	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009001 all species →	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR050055 all species →	Family	Elongation factor Tu GTPase	Interproscan
IPR033720 all species →	Domain	Elongation factor Tu, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43721 all species →	ELONGATION FACTOR TU-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0070125 all species →	Biological Process	mitochondrial translational elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02358	tuf, TUFM; elongation factor Tu	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.