Gene detail

Detailed information of amic_s0019.g23.t1 in Acropora microphthalma

Genomic Location: sc0000019_pilon:271096...280141
NR annotation: CAH3111076.1, unnamed protein product [Porites lobata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0019.g23.t1

ATGTTATATCCACGAGAGTCCGAAACTCGCCAAGTCAAATCGTTGGACGGTTTGTGGGATTTTCGAGCGGACATTTTGCGGTCGGGGTTTGAGGAAATGTGGTACTCTATGCCATTGGCTCAGAGTGGAGATGTGTTGTCTATGCCAGTTCCATCCAGCTACAATGACGTCACTGAAGAGCGCTGGCTTAGGGACTTTATTGGCTGGGTCTGGTACGACAAACAGTTTTATGTCCCTCCATCTTGGCTGGCAAACAATAAAAGAGTGGTGCTACGCTTCGATAGTGTTTTTTATCGGTGTAAAGTGTGGTTGAACAATATTGAGGTCTTGCAGCATGAAGGAGGAGATTTGCCTTTTGAAGTTGAGATCACAAAGGAACTGATTAGAATTAGGAGAGACTCGCACAGAGTAACAGTAGCTGTGAATAATACATTTCCATTCGTCGAACAAGGAGTCCGGCATAGCGCTAGAGATAAGAGGTCAACTATAAACTCGTCCTTCTGCGATTCTTTAGATGATTATTCTACAATAGTAGACTTCGCTGGAATTCACGGCTCCGTAAAACTTTATTCTACTCCTACAGTTCACACGTCAGACATCACTTATGCTTCTCATTATAATTACCACAAAGCCACTGTCAAATTCATCACCCAAGTTGAACTTGACTACAGAGCGAAGAAAAATGATGTCATAATGAGGTACGAGTTGTTAGACCAGGAGGGAAAAGTAGCCGCTTTTACAATGGGTGTCAACATGCTTACTTGTGAAATGACAGTGTTTTACCCAAAGCTGTGGTGGCCAGTTGGTATGAGTGACAGGCCAGGGTACCTTTATACACTAAAGGTTTCAGCGTCGCATAATGACATACGTGATGTGTACATTCTCCCTGTGGGTATCCGGACCGTCCGAGTCGAGGACCGCAGATTCCTTATCAATAACGTGCCTTTTTACTTCAAAGGTTTTGGTAAAATACAAGATGGTGATATAAGAGGCCGAGGCTTTGATTACGCAGCTCTAATAAAGGATTTTAATCTAATGAAGTGGTTTGGCGCCAATTCCATTCGTACGACTAGACATCCACCGCCTGAGGAATTGCTGGAACTAGCGGATAAGCATGGCATTGTTGTCATAGATGAAAGTCCACCTGTTGCACCAAAGGAGATGTTTCAGAATTATATATCTGACCATACTATCAACCAGCACCTTAACCTGATGACAGAACTTGTAATGCGCGACAAGAATCATCCGTCAGTGGTGATGTGGTCTGTTGCGAACCATCGCTCGGACTCGAGCAGTGAAGACTTTCACTTTCACTTGAGAAGAATGATTGAATTCACCCGTGAAATGGATATACAAAGACGCCCTGTGACTTATTTAATTTCATCGGACTACAGGTTTGGTGTAGTGGAGGACCCTGCGCTTGAATTCTGTGATGTCATTTCGTTCAGTCGTCACTATGGGTGGTATTGGTTCCCCGGTCAACCTTTTCTCATAACAGAGGCGTTAGAGGAGGATCTGCGTGGCTTACATGAAGCGTTTAACAAACCAATACTGATGACAGAGTACGGCAGTAGCGCTGTTATCGGAAGGCACAAGCAACCATCCTTGATTTACTCTGAGGAATATCAGGTGGACACGATGAAGAAATATTTCCCTGTTTTTGATCAACTCAGAAAAGAGTTTTTGGTGGGAGAAATGACCTGGACGTTTGCAGATTATGACGTTTTAGAATCTTTTGACCTTATATCAGCCAACACCAAGGGACTGTTGAGCCGACAAAGACAACCCAAAGCTTCCGCGCATGTTCTCCGTCAGAGATACCAAGCCCTGGGGATGGACACGCATCCTCGATTTACTGGTGACGAGCTATTGGACATATTAATAAGATTTAAGCCTCACCATGGTAGCGAGTACCCCATCAGTTTTAAACATCGACTGCCCGCTTTGATACGAGAAGAAAGGGTTAACACAACAATAAGAAAACGATCCGTGGACGGATCTTAG

Transcript

amic_s0019.g23.t1

CCCAACAGGTGGAGAATCAAACAATCCCAGTAAAAGTGAACACTGATTAAAGACAGCGGAAGTTTTGCGCGATGCCCTCTTCCTATTTTGCCAGTTCATCTTTAATACTTTTACTGAGATGGTATATTTTAATGACGCGGTCTACTCGGGCAATGTTATATCCACGAGAGTCCGAAACTCGCCAAGTCAAATCGTTGGACGGTTTGTGGGATTTTCGAGCGGACATTTTGCGGTCGGGGTTTGAGGAAATGTGGTACTCTATGCCATTGGCTCAGAGTGGAGATGTGTTGTCTATGCCAGTTCCATCCAGCTACAATGACGTCACTGAAGAGCGCTGGCTTAGGGACTTTATTGGCTGGGTCTGGTACGACAAACAGTTTTATGTCCCTCCATCTTGGCTGGCAAACAATAAAAGAGTGGTGCTACGCTTCGATAGTGTTTTTTATCGGTGTAAAGTGTGGTTGAACAATATTGAGGTCTTGCAGCATGAAGGAGGAGATTTGCCTTTTGAAGTTGAGATCACAAAGGAACTGATTAGAATTAGGAGAGACTCGCACAGAGTAACAGTAGCTGTGAATAATACATTTCCATTCGTCGAACAAGGAGTCCGGCATAGCGCTAGAGATAAGAGGTCAACTATAAACTCGTCCTTCTGCGATTCTTTAGATGATTATTCTACAATAGTAGACTTCGCTGGAATTCACGGCTCCGTAAAACTTTATTCTACTCCTACAGTTCACACGTCAGACATCACTTATGCTTCTCATTATAATTACCACAAAGCCACTGTCAAATTCATCACCCAAGTTGAACTTGACTACAGAGCGAAGAAAAATGATGTCATAATGAGGTACGAGTTGTTAGACCAGGAGGGAAAAGTAGCCGCTTTTACAATGGGTGTCAACATGCTTACTTGTGAAATGACAGTGTTTTACCCAAAGCTGTGGTGGCCAGTTGGTATGAGTGACAGGCCAGGGTACCTTTATACACTAAAGGTTTCAGCGTCGCATAATGACATACGTGATGTGTACATTCTCCCTGTGGGTATCCGGACCGTCCGAGTCGAGGACCGCAGATTCCTTATCAATAACGTGCCTTTTTACTTCAAAGGTTTTGGTAAAATACAAGATGGTGATATAAGAGGCCGAGGCTTTGATTACGCAGCTCTAATAAAGGATTTTAATCTAATGAAGTGGTTTGGCGCCAATTCCATTCGTACGACTAGACATCCACCGCCTGAGGAATTGCTGGAACTAGCGGATAAGCATGGCATTGTTGTCATAGATGAAAGTCCACCTGTTGCACCAAAGGAGATGTTTCAGAATTATATATCTGACCATACTATCAACCAGCACCTTAACCTGATGACAGAACTTGTAATGCGCGACAAGAATCATCCGTCAGTGGTGATGTGGTCTGTTGCGAACCATCGCTCGGACTCGAGCAGTGAAGACTTTCACTTTCACTTGAGAAGAATGATTGAATTCACCCGTGAAATGGATATACAAAGACGCCCTGTGACTTATTTAATTTCATCGGACTACAGGTTTGGTGTAGTGGAGGACCCTGCGCTTGAATTCTGTGATGTCATTTCGTTCAGTCGTCACTATGGGTGGTATTGGTTCCCCGGTCAACCTTTTCTCATAACAGAGGCGTTAGAGGAGGATCTGCGTGGCTTACATGAAGCGTTTAACAAACCAATACTGATGACAGAGTACGGCAGTAGCGCTGTTATCGGAAGGCACAAGCAACCATCCTTGATTTACTCTGAGGAATATCAGGTGGACACGATGAAGAAATATTTCCCTGTTTTTGATCAACTCAGAAAAGAGTTTTTGGTGGGAGAAATGACCTGGACGTTTGCAGATTATGACGTTTTAGAATCTTTTGACCTTATATCAGCCAACACCAAGGGACTGTTGAGCCGACAAAGACAACCCAAAGCTTCCGCGCATGTTCTCCGTCAGAGATACCAAGCCCTGGGGATGGACACGCATCCTCGATTTACTGGTGACGAGCTATTGGACATATTAATAAGATTTAAGCCTCACCATGGTAGCGAGTACCCCATCAGTTTTAAACATCGACTGCCCGCTTTGATACGAGAAGAAAGGGTTAACACAACAATAAGAAAACGATCCGTGGACGGATCTTAGATCGTTTTGAAAATCTATCTAGCAAGGGGTCAGATATCATCGATGATCTGTCCGGAGTTCGCAGAGATGGGTTAGCCTTGGGGAAAAATTTGCAATATTGGGAAAGCATGCGGTCAGCTCAACCTTATGCAACTTTAAAACTTGGATTCAGTCCATACAAGTGCTTTTCTGAGGCCGACACAGGGAGTAACAATTCAAGTTCTGATAAGGGACATTTGCCTCCTTTTATCCCTAGAAAACTAAACTGCGCTTTGCCGCTTTCAGCATAGTACTGCCTCTCAGCTTTATCTAGAAAAAAAAAATAATAAAGGACCCAATAGGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4FAT7	Beta-glucuronidase OS=Sus scrofa OX=9823 GN=GUSB PE=3 SV=1
P12265	Beta-glucuronidase OS=Mus musculus OX=10090 GN=Gusb PE=1 SV=2
O18835	Beta-glucuronidase OS=Canis lupus familiaris OX=9615 GN=GUSB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001408 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02836 all species →	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan
PF02837 all species →	Glyco_hydro_2_N	Glycosyl hydrolases family 2, sugar binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR006103 all species →	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR006101 all species →	Family	Glycoside hydrolase, family 2	Interproscan
IPR006104 all species →	Domain	Glycosyl hydrolases family 2, sugar binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10066 all species →	BETA-GLUCURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004566 all species →	Molecular Function	beta-glucuronidase activity	Interproscan
GO:0019391 all species →	Biological Process	obsolete glucuronoside catabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01195	uidA, GUSB; beta-glucuronidase	EC:3.2.1.31	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.