Gene detail

Detailed information of amic_s0019.g67.t1 in Acropora microphthalma

Genomic Location: sc0000019_pilon:778315...789544
NR annotation: XP_015762274.1, PREDICTED: septin-2B-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0019.g67.t1

GGTGCCCTTGAATTATAAGGAAATACGTATTATTCGATTTTCTTGCGGAGGCTTTTTTCAACTCAAAACTGAACTACCCTCTTTCGTTTACACTTTGGCGAAAATCAAAGGTTTACGCGTCGAAAACACAGCACGATTGCATACCAAATTGCTGTGATATTCTGTCGCAGAGTAGGCTTTGCTTTGTAAAACATCAGAAAGACGCCGCTGCTCATCCCTCAAACAGTAACGGACAAATTCGCCAGTATGGATATCTAATACATCTCCTCGTATTTGTATTTTGCCTACAGACTATCCCACTTCTTCAACCTCAATACAGACATTGAACTTTACCCTTACTGGAAAGGGAAATCGCATTTCGACCGTCATGCAGCGTCTTGTGATAGTGTTTAAGACGCATTCAACCATATTGACAGTGAGGATAAGATCAAAAGGGTTGACAAATGCGGCGTTCTTCTCTGCGTCTCGCAGACAAACTAAACTACCGGTGTAAAGCAAATATTTAGGTTTTAGTTACGAATTTTCAGTCATCGTGTCGAAATTGACCTGTAAGGAAACCAACTGCCTTATCTTCCGTACACGTGACACAGGAGATATCGCTTGTGCTCATGGGATTTGACGCTCAAGTACTGTTTATTTAATGAAGTCATCAAGAGAGTAGGACTCGCCCATAAGTGAATTTCAACTGTTTCCTGACAAAGAATCTTACAACCATGGCTAGTTATGTGGGGTTTGCAAATCTACCCAATCAAGTCCATCGCAAGTCTGTGAAAAAAGGTTTTGAATTCACTTTAATGGTTGTAGGTGAGTCAGGACTTGGAAAATCCACATTGATTGACAGTTTGTTTTTGACGGATCTGTATTTGAATAGAAAGATCCCCAGAGTATCTGATGTTGTGAAGCGAACTGTCAGGATTGAGACTTCAACAGTTGAAATTGAGGAAAGAGGAGTAAAGTTACGCCTCACCGTAGTTGACACTCCAGGCTATGGTGATGGCATGGATAATAAAGACAGCTTTCAACCCATCTTGGACTATGTAAAGGAGCAGTTTGAGAGCTATCTGAGGGATGAATCAGGATTAAATCGGCGGCATATTGTTGATACAAGAGTTCATTGCTGTTTTTATTTTGTGGCTCCAACTGGCCATGGTCTGAAGCCTCTTGATGTCGAGTTTATGAAACAACTTCATGATAAAGTAAACATTGTTCCTGTAATAGGCAAGGCTGACACCCTTACACCAACAGAACTTCAAAGCATGAAAAGAAGGATTCTAGATGAAATTGATGAAAATGGTATCAAAATTTATCAGCTGCCTGACTGCGAGAGTGATGAAGATGAGGACTATGTTGAGCAAACAAAACAGCTTAAGGCTAGCATGCCATTTGCTGTGGTAGGGAGCAACACTCTTATTGAAGTATGTGGCAAGAAAGTGAGGGGACGGTTGTATCCTTGGGGAGTAGTAGAAGTTGAAAACCCAAAGCACTGTGATTTCACAAAGTTGCGCACAATGCTCATCTCCCACATGCAAGATCTGAAAGAAGTGACACAAGAAAGTCATTATGAAAATTTCCGTGCAGCTCAACTATCAGGCGAATCTCCAGTATCACGTGATTTGATTGATTCTCCGGTTATGGCAAGGAGGAAAAATGTAGCGGCAGATGTGATGCTTCAAAAAGATCGTGCATTGATGGAAAAGGAGGAGGAGCTTCGCCGTATGCAAGAAATGATTGCCCAAATGCAGCAACAAATGAAAAGCCAGAGCTAGAGGAGTGAGTGAGAGGTAGAAAATCAGTTACTATCTTGATACTGAAGTAACAGGAAATTAATGTTTAGAGTAAAAGGAATGGAAATGAAGTAGGATGTCTTACAACTCCTTAATGTCTTATTAAAACAGATTACGGTAGATTTACATTGATTTATGCCAAAGGTCATTTGAAAAGCCATGGAAAAAAAGATTCCCCCTTTTTTGTTTCCTTTGGAGAGATGAATTAACCTAGTTTTTTTTTGTATAAAGGATAGTTTAGTGTAGGCAGAGAATCCTTTGTTTGCTGTGTTTTTGCTTTGTTTTATTTGTTTGATTTTTGGTACCGAGATGTTATTTTTAGGGAAATGTATCTGCATTTGCCAAACAAAAAAGCTTGCTGATGATGTGAAAATCATTGGGATAAAACTGATTTGTAACAGTTTTGTCTGGTAATGTGTATATATAGTGATCTAAGAATGTTTTAGGAATTTTTCGAAAGGTCTCCACGTCATAAGCCTTGTTTCTTGGGAATGAAGATTCGTTTAATTTTTGATGTGTAATAATGAGTTACCCATCCCAACATCTGACTAGATATAATGGCTGGAGAAAAGGTTGAAACGGATTGAAAACTGGCTTTTAACTGGTTTGTGTATTCAGTTGAGATATTCCCCATACCAAGTACTTCTCAATATCCCTCCACCCAaaacaattgaaaaagtaaaagtaaagataaataattaggcataataaattagtacattaataaataaaATATATTAGGCATAATACAAGGCATAATGccttgttcacaccaaagcttaaacatgtttaaacgctgttaagttaaacatggttataaattcacgtcaaatcgtacaaattgatttttgtcaacttcaaatttagtacttatcaatgcatgtaaattaaaacttatcagatcgagtcttttgtaaaagccagtcccacacattttttggactgattttctttcttcgagtttaattaagcatgtttagttggtgtgaacggggGTATTAGTTTGGAAAGAAACTTTTATCAGGCGACTCACCAAAATTAATGATATTTTAACCATGGAGAGCTACGAATGTTAGTCTATGTTTCTGCTGGCATGAGAGTTTATAATAATATTGCACAATGGAAGGATTGAAAAATCAAGTTTGATCCATAATGTGTGCATTGGTAGTTAGTGTTTTTTATGGTCAGCCTTAGGGTAACCCATATACCAGGCAGTTTTATAGAATGTCACTGTGAATTTTTTTGAGATATTGATGTAAATGTTTTTATAAGTGCCTCCTATATTATTCTGGCAATTTTATTCAGTTTTAAAATGCTTTTCCTCAATTTTTAAAATCGTTTTACGAAAGCAGTTGCTGAATGCGTTTAATAGTTATGATTAATTATATTTTATAATTAATTATATATTATAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L0Y5	Septin-2B OS=Xenopus tropicalis OX=8364 GN=sept2-B PE=2 SV=1
Q5ZMH1	Septin-2 OS=Gallus gallus OX=9031 GN=SEPTIN2 PE=2 SV=1
P42207	Septin-1 OS=Drosophila melanogaster OX=7227 GN=Septin1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000675 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00735 all species →	Septin	Septin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030379 all species →	Domain	Septin-type guanine nucleotide-binding (G) domain	Interproscan
IPR008113 all species →	Family	Septin 2	Interproscan
IPR016491 all species →	Family	Septin	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18884 all species →	SEPTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005940 all species →	Cellular Component	septin ring	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0031105 all species →	Cellular Component	septin complex	Interproscan
GO:0032153 all species →	Cellular Component	cell division site	Interproscan
GO:0034613 all species →	Biological Process	protein localization	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0061640 all species →	Biological Process	cytoskeleton-dependent cytokinesis	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16942	SEPT2; septin 2	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.