Gene detail

Detailed information of amic_s0020.g66.t1 in Acropora microphthalma

Genomic Location: sc0000020_pilon:1319639...1328470
NR annotation: XP_015765365.1, PREDICTED: 60S ribosomal protein L24-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0020.g66.t1

gctagaccccaaaaaatgagtttggtttccttccatgtaaaataattttggagaacaaaaaacttgaaactcttgtactgactatgtttcttttccacggaaacaatcagaggacaaagcacgtgggggttattgcatgataactgtcctgtgagttctcaccacatgacataaagtaaccaataaattcgtgccaaaattaatggatgggttataaAATAATTGTGTTGTAGTGTAGGGATCTAAACTTTTGGAGAAATTGCAAAATATGGTTTTCCATCATAAGTTTTCCAAAGATGATATCAGCCAATGATTAACCTCAGCATCATTACTTATGTTCAAGCAAGGAATCACTATCTTCATGACATCATTGATaaatgaatgaatttcatcatcacctttttagccccacttaagtagcagcgaggaaggcctgaaaatttcacgcctgaacagggattcgaaccctgaccgctaagatgccagtgcagtgctccaccagttgagctattaggccaactgggagcaggtggttatgtgggtcaattataagcctgtagatgaggacataggtgatgataataaaggaacttttcatgtatttgaaatgcagattggaatgaatgaatttcatcatagcatgatgcttaatcaatgCTAAATGTGATGATCAATGtcatttattctaatctgcatttcaaatacatgtaaaactcctgtactatcatcatctatttccacatctaggggatgtcactcttctcagttggcctgatagcagtggtagagcactgaaccgccattgcagaggtcagggtttgaatcaatctgaatttttcaggcctttctcgctgctgctcaagcagcgataaagatgcgatgatcaaattcattcattccaatccgcattccaaatacatggaaaattttctgtattatcatcatcattgagtcatattatTCTTTGCATAAACTGAACAATCATAATTCAGTAAGTGGTGCTTTTCCGATATTCAGCTTGCTACGTTGCACTCTCTTGATGCAGGCTTTGAACAGTAGAGCTCAGAGTCTCCAAATTCTTCATTAATTTTTCTAAGTTCGCTGCGTTCTTTGTCTCGTCCTCTTCCCCACATCTTTCAGCTTTGTCGTTGAGTTCAAAATGTAATTGAGCCAAACGCTCTTGAAGTTCTCGAACCTTATCCATTTTTTCAATAGTACAGTCCTTTCCAAACGCATGCAGCTTTCCGTTATTGAAATCGTGCATGAGTTCGAGCAATCCTTTCTCCATTTGTTTCACGTCTGTTCTATCAGTCAAAAAAGAATGTTCTTGAATCTGCGGTGTTGGTTTCACCTGCGGTCTCTCGCCCTCTTTTGTTTCTTTTAACTTACTGTTAGTACTGCTTGGGCCTTCCATACTCGTAGCCATCGATTCACTCTTTACtatatatctatatatgtatataAACAAAAAAAGGCAAACTCAAGCGCTATAGTACTTTTACAACAAAAATCATTTGGGAGTTTCTCTTGTGGACGCCATTATGAATTTACCCATAATGCCATATTACAGAGCTAACATAACGCATGCGTACACGTTCGTTCTTTTCTAGAGGAATATTCATCGTAGGGCGATGAAGCTCGAGTTGTGCAATTTCAGTGGGTACAAAATTTACCCTGGCCATGGAAAAAGGTACTGCCGGCTGGACGGGAAGGTTTTCAATTTCCTTAACAAAAGATGCGAGAAAGCCCTTTTGATGCGCCGAAATCCTCGAAAGATCTCATGGACCGTCCTCTATCGTAGAAAACACAAGAAAGGTACAACAGAGGAAGTTTCAAAAAAGCGAACTAGAAGGAACGTAAAGTTCCAGAGGCCGGTTCAGGGGGCCACTTTGGAAGAGATTTTGGCAAAGAGAAATCAGAAACCTGAAGTAAGGAAAGCCTTGCGTGAACAAGCCCTCAGGGCAGCAAAGGAAAAAGCGAAGGCAAGAATACAACAAAAGAAGCTTGCCAAGGGACAGCAAGCAACCCCCCAACAGGCTGCTAAACCAAAGCAGAAGGCTGCGAAACCAGTGCAAGCGAAGGCTCCACGTGTTGGGGGAAAACGCTGATTGTTTTGTCTCTGTGCTCAATTGAATTACGAACATGCAATAAAGCCTGCAAAAAATCAGTTCTCATTTAATGGTTTTGTTTGTGCAGTTTATTCAGGTGTGTGCAGTGAATCGAACTCATAGCCCAGACTTTGTTGTGTAACCTTGATAACTTCTAATGCTTCGCAAATTGATTAATTTAAGGACATTGCTGCGTATTTGCAACGCTAAATTTGTGAGTCAATTGATACTGATTAAAAGTTTAATTAAACAATATGCAGTATAAAAAGTACATGTTAATTTTACCCCGAtataacgatattttcggttattttacggcaatatcgttatatcgggagtctcgatataacgatctaattccactgctcccttggcatatcgttatatcgggttccacTGTATAAATAAAATATTTATATATAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q862I1	Large ribosomal subunit protein eL24 OS=Bos taurus OX=9913 GN=RPL24 PE=2 SV=2
Q66WF5	Large ribosomal subunit protein eL24 OS=Felis catus OX=9685 GN=RPL24 PE=2 SV=1
P83731	Large ribosomal subunit protein eL24 OS=Homo sapiens OX=9606 GN=RPL24 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004349 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01246 all species →	Ribosomal_L24e	Ribosomal protein L24e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000988 all species →	Family	Large ribosomal subunit protein eL24-related	Interproscan
IPR023442 all species →	Conserved_site	Large ribosomal subunit protein eL24, conserved site	Interproscan
IPR011017 all species →	Domain	TRASH domain	Interproscan
IPR038630 all species →	Homologous_superfamily	Ribosomal protein L24e/L24 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10792 all species →	60S RIBOSOMAL PROTEIN L24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02896	RP-L24e, RPL24; large subunit ribosomal protein L24e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.