Detailed information of amic_s0020.g80.t2 in Acropora microphthalma

Genomic Location: sc0000020_pilon:1556701...1566580
NR annotation: XP_015762168.1, PREDICTED: polyhomeotic-like protein 2 isoform X3 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P78364Polyhomeotic-like protein 1 OS=Homo sapiens OX=9606 GN=PHC1 PE=1 SV=3
Q64028Polyhomeotic-like protein 1 OS=Mus musculus OX=10090 GN=Phc1 PE=1 SV=3
P39769Polyhomeotic-proximal chromatin protein OS=Drosophila melanogaster OX=7227 GN=ph-p PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002925 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21319
all species →		zf-FCS_1Zinc finger, FCS-typeDomainInterproscan
PF00536
all species →		SAM_1SAM domain (Sterile alpha motif)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013761
all species →		Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR001660
all species →		DomainSterile alpha motif domainInterproscan
IPR038603
all species →		Homologous_superfamilyFCS-type zinc finger superfamilyInterproscan
IPR050548
all species →		FamilyPolycomb group and chromatin remodeling factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12247
all species →		POLYCOMB GROUP PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0035102
all species →		Cellular ComponentPRC1 complexInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan
GO:0045892
all species →		Biological Processnegative regulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0020.g80.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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