Detailed information of amic_s0020.g83.t1 in Acropora microphthalma

Genomic Location: sc0000020_pilon:1612593...1618190
NR annotation: XP_015762178.1, PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X7 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
P31696Agrin OS=Gallus gallus OX=9031 GN=AGRN PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001081 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF00054
all species →		Laminin_G_1Laminin G domainDomainInterproscan
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR050372
all species →		FamilyNeurexin-related cell adhesion and synaptic proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15036
all species →		PIKACHURIN-LIKE PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for amic_s0020.g83.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0020.g83.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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