Gene detail

Detailed information of amic_s0021.g153.t1 in Acropora microphthalma

Genomic Location: sc0000021_pilon:2610764...2614006
NR annotation: XP_015748445.1, PREDICTED: tetratricopeptide repeat protein 28-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0021.g153.t1

atggacaacaaccaagatatcgatcagcaccttttctttggcattgcagtggcatcagttttacttcaaacacgacgttacggaaaggccatagaactattcaatgaatgtttggttcttctagagaagcatgcttcagaaatgattgatagcaggcggagcgcctttaccactttggtttatgagaggctgtttagtctatacagccttgcgggtcagcacgctcgtgccctgcagatcggagagaaagcatatgctatgctctcgcaaagtgggaacattgatgacgcggaggccttgctcgccaaaatgtttcacgtgtatttttcggtaagggaaggaggtggagacgaagaaaacagcttcatagaaggcatgcttctagtccacagcggtatcaaatttaagtctgatttcgattactcccaagctaaggattgttttgaaagagctttagcacttgctatatgtaaagaaacgggcgacaaaaatggcgaggcgatgacgtacaatgacctgggaggattttatcgctgtctcaacaatcacaaggaggcgatagaatgttttagacacgcgtgcgcactctttagagagataggtgaccataaagaagagagtactcagtattctgaacttggagcactttactggtctctttcagaatttggcgaggcaagaacgtgtcatgaaaaagctcttgttatcaagaaagaaataggtgacagaagaggcgaagccagggcacataacgaccttggtaatgtgtatatgagtgttggagactacggccaagctaaagaatgttatgaacaagcgcttgttattgatgaagaaacgaattcgttacgaggaaaagccatagattatggacgcctgggaaacgttcacaaggtgcttgctgataacgacaaagcagaagagcgccaaaagaaagcgctggaactcaagattagaactaacgaaaacacggaagaggataaagcattgttaagtaagcaatacaatgacctgggttgtctgtgttattcccgtggggagttcgttgaagctaaaaagtttttcgagaaagccctttgcatcattcagcaaatggtcgacaggagaacagaagcagaaatctgggctaacttagcatcacttgaactttcgctaggcgaagacgagaagtcgaaacaatattgtaaaaaagcactccaattagcagacacttatggagataaaagagtaattcatgaagtgcacagtgtttttggaaatgcatacctgtcagccggcgacttttcaagggctatggaatatcacgaagaagttttgcgaatcactaaaacacttggagacaaacgatgtgaaggttcttgttatcattacatggggcagtgccatgcgtctatgggtgattacaggaaggcaatagaatattacaaaagggcccttgcaatttcccaagcaattggtgacaaaaatttacgcctacagcaatgcgaagatcgctccttgtctctcctctacgaatctgacctattcaatccaccagtggaactaggtggtggcatagcctgccgacactcagaggaggaggagaatgaggagacagaaagggaagagtgtcacgagcgatctgttcttgagttgtggtacaaaatcgcccctgtggcagatcaactgcaaggctccacggagatagtcatcgtgcctgatcgttctctttacagagttccttttggagcgttgatagacgagaatggcaagttcctatcggatactcaggcgggtgctctagttgtgggtgaccctgatgtcggaacggtcaagttccaaggagtttccaagaaatttcctcgacttccatgtgccaaaatagaagcagagatgatcggagcactccttcgtgtgcagccactaacagagaggcaggccactaaggaaacagtgttaaagaagatgaagtcagcaagtctaattcacattgctgcccacggagatgcggagagaggtgatatcgccttagcaccggatcgccatgtcaccaggattccacaggaagaacactttctcttgacaatggccgacgtatcaaaagtgcaactgcgagccaagttagttgtactcagctgctgtcacagtggacgagggcacatcaaagctgaaggaatcgttggaattgctcgagcgttcctagcttccggtgcacgctctgtgttagtttctctgtgggctgtagaggacgatgcaacgatgcagttgatgaagtggttctatgagagcctggtgggcgggaagagtgccagtaaatctcttcacaacgccatgaaattgatgagagagaacccaaagtactctgaagtcagacagtgggcacccttcatgctggtgggagatgacgtttccttccacttttga

Transcript

amic_s0021.g153.t1

cttcagtgctgaacagaagtttaacaaatcatacaaacgttgttttccaggtttagggtgattcagcagctatggacaacaaccaagatatcgatcagcaccttttctttggcattgcagtggcatcagttttacttcaaacacgacgttacggaaaggccatagaactattcaatgaatgtttggttcttctagagaagcatgcttcagaaatgattgatagcaggcggagcgcctttaccactttggtttatgagaggctgtttagtctatacagccttgcgggtcagcacgctcgtgccctgcagatcggagagaaagcatatgctatgctctcgcaaagtgggaacattgatgacgcggaggccttgctcgccaaaatgtttcacgtgtatttttcggtaagggaaggaggtggagacgaagaaaacagcttcatagaaggcatgcttctagtccacagcggtatcaaatttaagtctgatttcgattactcccaagctaaggattgttttgaaagagctttagcacttgctatatgtaaagaaacgggcgacaaaaatggcgaggcgatgacgtacaatgacctgggaggattttatcgctgtctcaacaatcacaaggaggcgatagaatgttttagacacgcgtgcgcactctttagagagataggtgaccataaagaagagagtactcagtattctgaacttggagcactttactggtctctttcagaatttggcgaggcaagaacgtgtcatgaaaaagctcttgttatcaagaaagaaataggtgacagaagaggcgaagccagggcacataacgaccttggtaatgtgtatatgagtgttggagactacggccaagctaaagaatgttatgaacaagcgcttgttattgatgaagaaacgaattcgttacgaggaaaagccatagattatggacgcctgggaaacgttcacaaggtgcttgctgataacgacaaagcagaagagcgccaaaagaaagcgctggaactcaagattagaactaacgaaaacacggaagaggataaagcattgttaagtaagcaatacaatgacctgggttgtctgtgttattcccgtggggagttcgttgaagctaaaaagtttttcgagaaagccctttgcatcattcagcaaatggtcgacaggagaacagaagcagaaatctgggctaacttagcatcacttgaactttcgctaggcgaagacgagaagtcgaaacaatattgtaaaaaagcactccaattagcagacacttatggagataaaagagtaattcatgaagtgcacagtgtttttggaaatgcatacctgtcagccggcgacttttcaagggctatggaatatcacgaagaagttttgcgaatcactaaaacacttggagacaaacgatgtgaaggttcttgttatcattacatggggcagtgccatgcgtctatgggtgattacaggaaggcaatagaatattacaaaagggcccttgcaatttcccaagcaattggtgacaaaaatttacgcctacagcaatgcgaagatcgctccttgtctctcctctacgaatctgacctattcaatccaccagtggaactaggtggtggcatagcctgccgacactcagaggaggaggagaatgaggagacagaaagggaagagtgtcacgagcgatctgttcttgagttgtggtacaaaatcgcccctgtggcagatcaactgcaaggctccacggagatagtcatcgtgcctgatcgttctctttacagagttccttttggagcgttgatagacgagaatggcaagttcctatcggatactcaggcgggtgctctagttgtgggtgaccctgatgtcggaacggtcaagttccaaggagtttccaagaaatttcctcgacttccatgtgccaaaatagaagcagagatgatcggagcactccttcgtgtgcagccactaacagagaggcaggccactaaggaaacagtgttaaagaagatgaagtcagcaagtctaattcacattgctgcccacggagatgcggagagaggtgatatcgccttagcaccggatcgccatgtcaccaggattccacaggaagaacactttctcttgacaatggccgacgtatcaaaagtgcaactgcgagccaagttagttgtactcagctgctgtcacagtggacgagggcacatcaaagctgaaggaatcgttggaattgctcgagcgttcctagcttccggtgcacgctctgtgttagtttctctgtgggctgtagaggacgatgcaacgatgcagttgatgaagtggttctatgagagcctggtgggcgggaagagtgccagtaaatctcttcacaacgccatgaaattgatgagagagaacccaaagtactctgaagtcagacagtgggcacccttcatgctggtgggagatgacgtttccttccacttttgatcgagaaaaccctcggacgaatcaagaaatgttgaccgtttTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF12770	CHAT	CHAT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR024983	Domain	CHAT domain	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan