Gene detail

Detailed information of amic_s0021.g183.t1 in Acropora microphthalma

Genomic Location: sc0000021_pilon:3151934...3159217
NR annotation: XP_044177002.1, uncharacterized protein LOC114951227 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0021.g183.t1

CTATTCAAAATTTCTGGTATTATATTTTTCCTGCTTTTCGAATCGCAGTGGTTTTTATGCTCTTTACAAGACTTTTGAGTGTACGATGGCTCGATTAACATTTATCAGAATGTTGCAAACATCAAGCACATGTTTTATTTGTTAGGAGAGGGCTGGGATATGCCACGGACAGCCTAGGCACAAGAAGTGCAAAAAGAAAAGACTGTAATGAACCTTCGCAAGTAACTTGAAAGATTGTCTGCACTGTAACCATGCAATCAAAGATCCTTGCCATCCACTCACCGAGGCAAGGATGAATGATGGAATCCTTTTATACAAAAGAATTTGAAGTAAAGACATTTCCCAATGATTTAAAACTCTTGCGATTTCATTGGAAAGTAAACCTGAAATAACAGGATTAAGTTAGCATAGGTCTGCACAAAAAAATTTGAAAATGATGTGAAAACTCCCTTCCTAGGATTGTCCTGCGATCCATCTGGAGGAGGAGACAAACTGGACATGCCAAGCACGCTATATTTTTTATTAAAGTGCAAACAATTTCATAAACTAGATATTTTTAATTTGTTTCGTAGGACAATGTATTGCTTGTGTGAAAATGATTCGTGTGAGACATGTGCAAAATCTTATAGGAAGCCTTTTAAAAACTATTTAAAAGCACAACTATTTTGAAGTTTGATAAAGAAGTAAAAAAATTGCATGGTTAAAAGGGTTTGTTTTCATTAGTTAACGATGCGTTTAAGTACTTTTGTCGTAAGAAACGCTTCTGCAGCTAAAGTTAATTGCGCATAACCAGTAGCGCTGCGAGGCACAAAGCTTTTTAGAGTGTAGCGTCTTTATTCTTTCTAGTAGTGTGAAGTTATCCTTGTATTTATTGATGATTCAGGAAACACTTGATCTTGTGTTAAAGTAATGAAGTAATTGGTGATTATAGTTAATCGGTTTTTGACAATTTCGACCAATGGGAAGCATAAGAAAAAACCAAAAAGACAAGAGAACTTTGTCTGAAATCAGAGCAACTCTTGTGCAACACTCAAAGAGAGGACAGAACAAGACCCGAATATGGATTCATTCAAAAACACAGGCGTGGAAATTACGAGAGTGATAACAAATCTTATGTTACGACTTTGCTTTATATGCCATGAGGAGGATATTAACCTCGTGAAGGCTTCTTGTTGTAGGAACTACCATCATCCAGATTGTTTGGAGAGATGGATGAGCACATTGATAAAATCAAGCAATAAATGTCCGATGTGCAGAAGAAAGTATAAAAAACCACATGCAGAGGCGCAGGCGGCTGACGCTAACTTCATGATCCGCATTGCGGGGGAAGGATTTAAATAATATATAAAGGACCTTCGTTTTTTTTGTAAATACTTTAATTTTAAGCCCTTGTTTGTAAATACAGAGATGAAAATATATATGAGGAACCAGTTCTTTTATTAACAGTATGTTGACCTTTGTTGGAACCGGTCATCAAGTTCAACACTGACCTTTGTCCAAAAGAAACGGATTAAATTGTATGCAAGACACAGTAATCGTTTCTGATTGTTGATTATAGTTAATCGGTTTTTGACAATTTCGACCAATGTGAAGCAAAAGAAAAAACCAGAAGAGAAGAGATCTTTCCTCGAAATCAGATGAATTTGTGTGCAAGAAGCAGTCATTCGACAAAACCGAAGTAGCGATTACAAAAGTTATAACAAATCTTGTAAGTATACGAGACTCAAGTGATGTTTTCGGTTTCTTTTCAAATTGCAGTAGTTTTTAATTTCAAATGCACGACCTAGGGTTTCATTTCTCACCACGTGCTCGTAAACTACTCTGCGTCAGAATGAACTTATCTTACAAACTTCAGTaaggacatctctgaagacatatggtaacagagctttctcggctgctggccccaaactgtggaacgaactacctttaccactcagatcatcaaacactttcactgttttcaaaaaggacttgattgtttaaatttAGTTTAACAACTTATATTTTATATTTTCTTTTTAATTATTAACTACGTTTACCAGGTGTGAACACTTTCAGAGGAACAATCATGTCAATTCAGCTTTCCTATCAGACAAGACAATATAGAGGGATGGTTATAAGAAGAAAGTTTCAACTTATTCCCTCTGCCACATTTCTCCATATTGAAGTTGTTGCTTCATTTACCAACTGCATAATGATGACCATTCAACAATAACCATTGCAGTTTGAATGTCATTCTCCAATTGGAACATTACAGACCCACAGAAAGAAATCACAGTTTGGAAAGAAAATGAGGACTAGAGATGTCCTCCTAGATGACATACTCATCCTCTGCAGAAAAAATAAAGTCGGTCCTGAGGAACCTTTCTAACATTGAATGGAGAATAAATGCACTTCTCTGCCTTAGACCTGACAGCTGGCAAGATGATTGATGCTTACAACACCTTGTTCTGCTGTTGAGGTCTTGACATGGACACAAGATTGGGAACATGGATACAGTTTGTTCCATTACAATTATTTTGATACCAGCTGGAGATGGTCATCAAGACCATTTGATACCCCCTTCATTCAGGTAATGTCAATCTGCACCTTACATTTGGCATCCAAATACCATTCTCAATTTTGTCATTAATTTTATCCAGTATTCCAGAATAAATTGGACATTGATTGCAACAGGTCTATGGCTCTTAAGATGCACACAACTCGAGAATTTTGACTGGATGCTCTTAGTGAACCTTGATGCAAGGTGTGTTTCCTCTGATGACATGTAACTGATGGCACTATACCAAATACAGATCTTCACAATCAGCTTGGGCCTACTACTAAGTCACCATGTATCTTACCTCACCAAAAACCAGTGAGTTTTGCAACAGCTGCACACTAGAATGGGATGCTTTTACATGTTAACAACCAATCAAATAAAACCCTAAGGAATTAATGAGTGTTCATACAACCATTGTTAACATGAGGATCTTTTTTGCTGCTTAGCCTAAACATGGAGGCACTAGAGCAAAAACCACAAGAGGAGAACATGACAAGCAACTTGTTCTCACAGAGAGTTTTACCCCACAAAAAACCATAATAATTATAGAAACACTGcgctaaaatacacaagggaaattttaggaaattataccttttcttgagatcaaactctctatcaacaacaaaggcctacccaccagactacattaaaaccaaaggattcccacagttacctaccacattcctcctactattcaacatgtaaaaactcaatcccattttccgaattcttcaggcttactcacttctttagtgataactcttatttccaccaaaaaaggcaaggaaatttgtaagtttcttaacaacatggttacctcaactttgtacgtggtcagcacaggaaaatactgcactcaagagtcaatctagaaacagtactacagacatcacagaaaatggagaagaaccaatgaattccattcactctcacctacagtaccacccataaaattccactgtaaaaaccatcatccttaaaaccttcaaaatcatacaaaaggaccctgagacaagccaagtattttcatttccaccaatcgtatctctcaaatgcaccaaaaacaggtgattgcctgatgagaattcgaagcacactaaaatccaacaactaagaaccttcaaatgcacaaaatttggtgcaaaatttgtcctttcatccaaaacaccaccaaggtctcaggacataaacaatctaacatcaacgattgatttatatacatttccacgtatgttatcctctatacagcaactgtaacctgcaaaacgtgcaaaaaaatttatattggaaaaactgaaaacttgcagacaacttccacaaacaacttgatgacatttgaagtaaaatgacaaagatacttctaaactagttgcattccatttcgacctcttaaaccactatccacaacatgacaatctgctgtctttccctgcgccaaggaaacacaggaagtcatacaaacctcaaacaattttacatgtcaactaagcactcttaaccctcaaggaataaattgatgctttttgttcaactaatttatctaagaatccaccaatgacatagctcctccacccctatattaaaacaacatgcaatCTCCAACGATGAAAGTATCTTTTAGCCATACTTATATGAAGCTAACTGCAAGGTGCAGTTCCTGAATAATAACTATTAAGAACAAAAATATTCATTTTAAAACAGTACTGTACTTGCCAGCAATTTTTTGTAAATATTGACAACAAATAGCAAGTACATTAAAGCTCTGAAATTGACCCTTATGAACTTTTAAATTTCATTTTGGAGAGCATTGCATGGCTTCCCAAGAAACAGATGGGTTATTTTCAACTAAGTGGTTTCACCTATGGTAATTAAGGGCTTTAATACACTACTCTTTACAAAGGCTTGAAGCATTTATCACTTAATTTAACTTCTCTCCCAACAATAAATTTACATAGAATTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12861 all species →	zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024991 all species →	Domain	Anaphase-promoting complex subunit 11, RING-H2 finger	Interproscan
IPR011016 all species →	Domain	Zinc finger, RING-CH-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

No PANTHER signature was detected for amic_s0021.g183.t1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0021.g183.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.