Gene detail

Detailed information of amic_s0022.g24.t1 in Acropora microphthalma

Genomic Location: sc0000022_pilon:461282...472687
NR annotation: XP_029194991.2, dynein axonemal assembly factor 10-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0022.g24.t1

agaataattgttttagtgtatactcattcagtgatctcaacaacactttttgtggctttctttgggttttctggtacagcattttcttggattttcaatatttccgctttacttatggtgccgaaacgcgagtttaaagcgactattttgttttgtttggatcacgcattgttcactctgtagggagtgaataatgctcaattactccgagatagcgaaccaatcagattacttgaaacaccaagatcactgagtgagtatatactaaTTCGGCTTATAAAGAGAAATGTTATCATAATGGCGAAAGGCGATGCGATGCATCAAATGTGCTCGCGTGCTGCATtaggctagtttcaaaatatgccaaaacaagggaatagagacgaatctcgagcaaataatgtgcatatcctcttgttcaaaacaactgaaaatgcaaattattaacccgaactttgtccctgagtttttgtctttgaacaatttgaaaatagtctattTTGATCTAGAGGAAGTACGAAAATGTCTCGACTACCAAGCAGAAAGCGACTGAGAAACGAACTTCCCTGTAAATATGAACGCCTGGGCCATTTGACAAACATGGATAAACCAAAAATTATCGAACATGTCCACAAGCCATTGGATTTTACTTTGTTTGATGCACGATGGATACCATGTAGTGCAAGATTTGTTGTCCTTGGAAATCATGCACGTGGGACGGGAGCTTTACAAATATACGAGATTTCGAAGGGCTCCGTCAATCTCGTGAAAAGTGAAGAGAAACGAACAGCACTCAAATGTGGCACATTTGGAGCATCGAACTTGCAGCAGAGATATCTTGCAACTGGTGACTTTGAAGGAAAAATGATGATTTGGAATCTTGAAAACACAGAAAAGCCAGTGTACTCAGTGAAGGCACATTCTCAGATTATTAATGCAATTGATGGTGTGGGAGGTCTTGGTGTTGGAGAAGGTGCACCAGAGATTGTAACTGCCAGTAGAGATGGGTCTGTGAAAGTTTGGGACCCTCGTCAGAAAGACAAACCTGTTGCTAACATGGCACCAGCTGAAGGTGAAGAAGGACGTGATTGCTGGTGTGTTGCATTTGGTGATGCTTATAACACAGAAGAGCGCAGTGTTGTTGCAGGATATGACAATGGAGATATAAAAATGTTTGATCTAAAAAAGATGGCTGTCAGATGGGAGACAAACGTGAAGAATGGGGTATGTGGCCTAGAGTTTGACCGGAAAGACATAATGATGAATAAACTGGTAGCAACAACATTAGAATCTAAATTTCATGTGTTTGATGTTAGAACGCAACACCCAGAGAAAGGTTTTGCATCACTCTCAGAAAAGGCTCACAAGTCAACAATCTGGTGTGTAAGGCATCTACCTCAGAATCGTGAAGTTTTCATGACATGTGGTGGCGCAGGATCCTTAAATCTCTGGAAATACTCGTATCCTGACAAAAGAGTCAAGAAAGATTCAAAGGATTTAGACATGGGAGTTATTGGTTCAGTTTCATTGTTACAAAATGCAAATTTATCTACACAGCCCATCACATCCTTTGACTGGAGCCCAGACAAGGAAGGTCTCTGTGTATGTACCTCACTTGATCAGAGTCTCAGGGTTATCATTGTAACCAAACTAAAGAGTGTGTGATATACATATTGAGAGATTTATAGAGTGTATATCATAATAATTTGTTTGTACATTGTAAATATTGTAGCTGTGTTTATATGAACTTTCTTTTTTAACTCAGACGGACCTCACCGTCATTTTTTTGTAATTTGCACAGTGCCTAGTGAACTTGCTGTGGCTTCTTCACATGCCAACAAGGATGTTTTAATGAAATCATGTGTAACAACATATTTAAATGCCAACCAGGGCTCTATTGGTGAATTCTTTAACAAGGCTGTATTTCAGTGATGTAATAAAACTAAAAACCAGAAAAAGTTGCAATGACTTTAACCAGTGTTCTAACTTAAAGTTGTCCATCTCCTCTGGTTTTTGGAAAAACTCACTTTATTATAATAATTTATTATGTTAGTATTTTATCCTGTCTTTCCATTCATAGTTTGTGTTTTTGTAGGCCTGTTAACATTTCTTGTGACTTCTTTTTTGTTTCTTGTACTGTTTTGTACTCTCAATCGACCAAGAAACAGTCAAAGTGCAGAAGAGCCAAAAGAGACCATCAAAATTCATGAAGGACATCAGGAAACCATTGATATTGTTTTTCAAATAAACAGCTACAGTAAATCTAACTTAAAGCAACAGATTAAATGGCATAATACTGTATTCATTCCCTACCTTTTTGGCATTTTAGATCACATTTAATTCTACAAAGTATCACAACTTGGGGTTTGTATGAGCATTACAGTGCCAAACAGAGTTAGAACACCTGATACCATTATTTTGATAACCCCAAAATTGAAGCCAAGCTAAATTCTCTCATAAATTCCAGAAATGTGTGGGTAAATTAATTTGACAATGGTGTCACAAATAATTTGAATTCTGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4QNE6	Dynein axonemal assembly factor 10 OS=Xenopus tropicalis OX=8364 GN=dnaaf10 PE=2 SV=1
Q8BGF3	Dynein axonemal assembly factor 10 OS=Mus musculus OX=10090 GN=Dnaaf10 PE=1 SV=1
Q29RZ9	Dynein axonemal assembly factor 10 OS=Bos taurus OX=9913 GN=DNAAF10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007806 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10971 all species →	MRNA EXPORT FACTOR AND BUB3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24761	WDR92, DNAAF10; dynein axonemal assembly factor 10	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.