Gene detail

Detailed information of amic_s0022.g60.t1 in Acropora microphthalma

Genomic Location: sc0000022_pilon:909149...914165
NR annotation: XP_015751445.1, PREDICTED: neurexin-3-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0022.g60.t1

ATGGAAGCGACTCGGAATCTCCCCTGCTTGCTTCATCTTCTTCTTACTTTGGTTTTTCACTGTGATGGCAATTCCGTGACATTTATAAACGAGTCCTCGTCGTTCATTCAACTGAAGAACTGGGACGTGTCTGAAAGTCGAGGTCTTGGATTTCGCTTTAAAACCTTCATGTCGGAAGCGCTTCTTTTGTACATTGACGACGAAGCAAAATCAAATTTCCTTCGCGTTGAACTATTTCAAGGAAGACTTCGACTGACATGCAGCCATGGTTCACGATTCGGAGAAATGGCAGTGGAAATTGGAGATAATCTTAACGACTTGCAATGGCATCCTGTGCTTTTAGAGAGAGTAAAAGGCCAAACGACGATCTCGTTAAACGGACAGTCTAAATCAACAGTCGACAGCCGCAAGAGGAGAAGCTTAAATATAACGAGCCCTATTTACTTTGGCGGAATTCCTCCAAAGCTCGAAGCAAGTAGAATTACCCAACCTTCGGTGCTACGGTTGCGTCGTTTTGTAGGTTGTCTCGCTGATATCGAGATGTTTGAGTATTCAGCGCGGCAGGGAAAAAAACGAAAACTTGCGGCGATTTGGGAAAAAGAGAATGCAATCGCTCCAGGGTGCACGAATATGTGTGATATCGAAAATCAATGTCAAAATGGCGGGCAATGTTTGAACAGATTTATCACAACTGACTGCGGCTGCGCTACCACTGGATTCAGGGGGAAAACTTGCACCAAAGGACTTCCTGTTCTTGGCCTGAAGCTATCTGATTACGTTATTTACAACCGGTCCTACAAAGCTATCTCATCGCAGCAGGATCGGATCATTTTGCGATTGAAAACAACCAATCAGAATAGCTCGATATTGGAAAGTGGTCTTGGGCGCGACTATTTGGTGATAGAACTGTATAGAGGCTTTCTATTGGTTCGCTGGAATCTGGGATCTGGTGAGTTAAACTTGCATGTTCGTGAACGACCGTGCGATGATGGGAAGTGGCACTCTATGGACCTCGTTAGGAACCGGCGTCGACTGGATTTAACCCTGGATGGGGAAGTTCGTAAGTCGCGTACATTCCCTGGGAGGTTTGTTTCGTTCAATTTAGGGCCAGGTCAAGGAGATGTATATATCGGAGGGATTTTGCCAAGTCATCATCTTTCCAAAAGAAGTCGTTCCTTGGGCAGGGGCTTTGATGGGTGTCTCCAGGAATTTTTCATCAACGACGTGGATGTTGTGCAGGGAGTTCTTACTCGAGATAATGCTTTCAGAGTCAAAGGTCGCCCCAAGGCAAGGTGTGAAGACACCAGGGAACCAGTATCAACTATTTTAACACGCATATCCAGTCGCTGGGAGATAACCACAACGCAATCAACCAAAGAAGGATTAACAACACTTAAAACAAACCTGACGAAACGTCCACTTCCTGCGTCATCAGTTACTTCAACCATCTCACCAAAAACAAGCCCTGAAGAGAGTACGGTTATATATCATAGTATCTCTACCACTTCTCGAATACCTTGCACAGATGACGATTGTGATGTCGAAAAATCTGGTTCGGGAGACGAAGATTATTCGGGTGAAACTCGTAGGCCATGGGTAGCTAAGGAGACGAGCTTCGTTGATAGCAGAGACAATAACATCAAAGAGCCCGAAATTGACATCATCGAGAGTGTGAAGAAGCCTCCCGGCACCGATGATGGACTCGTCGGAGAGCCCGACATCTCGCAAGAGAATTGTATCGAAGACGATGAAGATGGTTGCCACGACGACGCTAATTCTGGTCAGAGTTCCACCGCTGAAGGCAGTTCTGCCGGGAGTGCGGCAACAACGACCACAACTTTGCCGGGAATAGACAGTAAAGCGCGTGAAGGTGTTCCATTAAAAACAAAAAGCACAAAAAAAGGAAAGCTTATAGCTGGGATTGTTGCAGTCGCATCTCTTCTGGTGGTATTCTGCATTTTTGCTGTTTGGTGGCTGCTTAAACACAGGAATGATTTATACTGGAAGGGGTCGTACAGAGTGGAAGTCAAGAAAGAAAAGACCTTAAAGTCTGAAGTAACGGACGTGTAA

Transcript

amic_s0022.g60.t1

ATTGATGTTCAGTTTTTCTTGTCCTCAGGTTATCGTAGTTCAGTTTATTAGGAGTCAAGGCTAATGAATCGAGTGACGTTGTCAAGATAGCCTTCAATTTGCACCCACAGGGAGGGAAGCGCGCAAAGGTTATCGAATATCTCATCGTAATACATAACTCACGAACGGAAACCATCAGCACTATGGAAGCGACTCGGAATCTCCCCTGCTTGCTTCATCTTCTTCTTACTTTGGTTTTTCACTGTGATGGCAATTCCGTGACATTTATAAACGAGTCCTCGTCGTTCATTCAACTGAAGAACTGGGACGTGTCTGAAAGTCGAGGTCTTGGATTTCGCTTTAAAACCTTCATGTCGGAAGCGCTTCTTTTGTACATTGACGACGAAGCAAAATCAAATTTCCTTCGCGTTGAACTATTTCAAGGAAGACTTCGACTGACATGCAGCCATGGTTCACGATTCGGAGAAATGGCAGTGGAAATTGGAGATAATCTTAACGACTTGCAATGGCATCCTGTGCTTTTAGAGAGAGTAAAAGGCCAAACGACGATCTCGTTAAACGGACAGTCTAAATCAACAGTCGACAGCCGCAAGAGGAGAAGCTTAAATATAACGAGCCCTATTTACTTTGGCGGAATTCCTCCAAAGCTCGAAGCAAGTAGAATTACCCAACCTTCGGTGCTACGGTTGCGTCGTTTTGTAGGTTGTCTCGCTGATATCGAGATGTTTGAGTATTCAGCGCGGCAGGGAAAAAAACGAAAACTTGCGGCGATTTGGGAAAAAGAGAATGCAATCGCTCCAGGGTGCACGAATATGTGTGATATCGAAAATCAATGTCAAAATGGCGGGCAATGTTTGAACAGATTTATCACAACTGACTGCGGCTGCGCTACCACTGGATTCAGGGGGAAAACTTGCACCAAAGGACTTCCTGTTCTTGGCCTGAAGCTATCTGATTACGTTATTTACAACCGGTCCTACAAAGCTATCTCATCGCAGCAGGATCGGATCATTTTGCGATTGAAAACAACCAATCAGAATAGCTCGATATTGGAAAGTGGTCTTGGGCGCGACTATTTGGTGATAGAACTGTATAGAGGCTTTCTATTGGTTCGCTGGAATCTGGGATCTGGTGAGTTAAACTTGCATGTTCGTGAACGACCGTGCGATGATGGGAAGTGGCACTCTATGGACCTCGTTAGGAACCGGCGTCGACTGGATTTAACCCTGGATGGGGAAGTTCGTAAGTCGCGTACATTCCCTGGGAGGTTTGTTTCGTTCAATTTAGGGCCAGGTCAAGGAGATGTATATATCGGAGGGATTTTGCCAAGTCATCATCTTTCCAAAAGAAGTCGTTCCTTGGGCAGGGGCTTTGATGGGTGTCTCCAGGAATTTTTCATCAACGACGTGGATGTTGTGCAGGGAGTTCTTACTCGAGATAATGCTTTCAGAGTCAAAGGTCGCCCCAAGGCAAGGTGTGAAGACACCAGGGAACCAGTATCAACTATTTTAACACGCATATCCAGTCGCTGGGAGATAACCACAACGCAATCAACCAAAGAAGGATTAACAACACTTAAAACAAACCTGACGAAACGTCCACTTCCTGCGTCATCAGTTACTTCAACCATCTCACCAAAAACAAGCCCTGAAGAGAGTACGGTTATATATCATAGTATCTCTACCACTTCTCGAATACCTTGCACAGATGACGATTGTGATGTCGAAAAATCTGGTTCGGGAGACGAAGATTATTCGGGTGAAACTCGTAGGCCATGGGTAGCTAAGGAGACGAGCTTCGTTGATAGCAGAGACAATAACATCAAAGAGCCCGAAATTGACATCATCGAGAGTGTGAAGAAGCCTCCCGGCACCGATGATGGACTCGTCGGAGAGCCCGACATCTCGCAAGAGAATTGTATCGAAGACGATGAAGATGGTTGCCACGACGACGCTAATTCTGGTCAGAGTTCCACCGCTGAAGGCAGTTCTGCCGGGAGTGCGGCAACAACGACCACAACTTTGCCGGGAATAGACAGTAAAGCGCGTGAAGGTGTTCCATTAAAAACAAAAAGCACAAAAAAAGGAAAGCTTATAGCTGGGATTGTTGCAGTCGCATCTCTTCTGGTGGTATTCTGCATTTTTGCTGTTTGGTGGCTGCTTAAACACAGGAATGATTTATACTGGAAGGGGTCGTACAGAGTGGAAGTCAAGAAAGAAAAGACCTTAAAGTCTGAAGTAACGGACGTGTAAAGACGTCATTTGTGAAGTATGTAGGATTACAAGTACACTGTAGGTGTGGAAGCTGATATGTGGTTCAGTTAGACTTCACAAACGACAACGAGCTTCATTTCAAATTGGCTCGCACATTTTTCATGTCACGCCGTTTTAAATACAGGGAATGGGTCTCAGTGACACGCGCGCTCTCCCTTCCTGGCGTGACTACATAGCATCCAATAACCTGTACCTTCTCTCGAAAACATTATCTCAAGTCTGGAGCTCTCTGTTTAGTACAGGCTTATCGTGACGTATAGTGTAAACTTGGACGAAATAAACGGAAAATTTAGACCATCCTCCTACCTCACCACTTAAATCAAGGATGTGAAAGTCTTGACACGGCTTCATCGTTGAGTTTTTTCGGTAGGGTGGGCGGGTTAGAGTTTTCTGTTTCATTTTATTCTGTCCACGTTTGTAGCGACAATTTGGCTACTTTCGCCCATGCAAAGGGGCAGGTTTCATTTATTCGTAATATTGTTACGATTTTGATTGGCTCCAGACTGAAAATACACCTCATTTTTATTTGCTATTACATTTCGAACGGGAAACGTTTCTAGGAGCAAAACAATAGTTTTTTTTTTATTTGAAAAGACCATTTTAcgaaacaagggcaactccagcctcactttcattcaaagaccagacagctaagcacacaactgtgaaaatggcctatCTCTAGGgttagctttaggtaacaaggtgaagtagagccaaacgagaatcgtcttctctgatgtctgacgtcatcgtcgtcctctcgtgacagaaataaatatggcgaaatatggttcaagctgcaaacaaagagaactaatcgccgataaatcgcattgcaatagcagagagagcaacccttgaagaagttgatcgaccgtctccatattccgccatatttatttctaccaggaaaggaagacgatgacgtcagatacatcggaaaacacgattttcgttcggtcctacttcattgtatgttatccaatgctaaccAATTAAGAGTTTGCCTTGCTAAGTTCAGCAAACGCGCATTCCTAAACGTATTTTATACCATAAGGTTCGTACCATACCAAAGTCACTATATTGCGAAATGCAAGTAAATCTTATATGTGTAACATATGCGCTTGCGCAAATATACACGCATTCTCAAACGTATTGTACTCACCACATGCATGGCAAAAATGATTTCAATTGCAAATAAAAATGAAGTTAAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D0PRN3	Neurexin-3 OS=Gallus gallus OX=9031 PE=1 SV=1
P24043	Laminin subunit alpha-2 OS=Homo sapiens OX=9606 GN=LAMA2 PE=1 SV=4
Q60675	Laminin subunit alpha-2 OS=Mus musculus OX=10090 GN=Lama2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000842 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050372 all species →	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036 all species →	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0022.g60.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07377	NRXN; neurexin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.