Gene detail

Detailed information of amic_s0022.g66.t1 in Acropora microphthalma

Genomic Location: sc0000022_pilon:1042981...1048595
NR annotation: XP_015751452.1, PREDICTED: nucleoporin GLE1-like isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0022.g66.t1

ATGGCTGACTCGAGTGTGCTTTCAGGAAGAGGGTTTACCGTGAAAGCCAAAATAAATAGTGCCTCTCTTGTTAACGATGTTTTGCAAGGCTTAGCATCTTGTTCGAAGAACCGTTTACGATATGATACTCACTGGAAGCCTACACGCGAAGCTCTTGATGAGATATCTGGACCTCCGAAGTTGCTAGCAGATCTGTTAAGGTCTGTTTCACCTTCCAAAGACCTTTCTTTAGGGGAGACGAATACTTGTAGTTCCTTGGAGCATGGAAGTGAAACTCTAAATGAAGAGGAAGAGGAAGAGAAAGATCAAAATGGTGTTGTTTTTGATGAAATGGTTTCTTTCATCGGAAAAAAGGATTTGGAAATGCCTGAAGCCGGTTCCACATGTACAACCACAGAAAATACAAACGACGGATTAAGGGAAAAAGAACTTCTGGCATCCTATGATAATACTCACGTGGCCATTTACCGTTTAGAAACAGAAAAGCGGTTGAAAGCTCAAGAAGATCTTAACTCCAGAGAAGAGAAATTAAGAGAACATTCAATGAAACTTCAGACCAGGAAGCGTCGTTATTTGCAACAAAAAGAAAATGAACGAGTTGAGGAACGTCTTCAATCTTTACAAGCACTACAACTAGATGAGAAAAGAAAAAGTGAAGAGGCCAGGCTCAGACAAAAAAAGCTTGAGCAGTCGCATGCTGAGTACGCTCAGAAAGCTGTGAGACGAGTCAAAGAAGTTGAAGAACTGAGATTAAAAGTTCTCAGACAAGAGCAACTTTTCAAGAAACAGATGATGCAGTTAGAAGCCTTATTCAAAGGCATTGGAGACACTGCTTCAAGCATTCAACAGATTTTCCAAGAGTGTAGATATCAATCTGCTGTGGCAACATTTAAGCCAGAAATATCGCAAGAAGTTGCAAAAGTGCTGAAAATCTCCCAAAATGCACTTGACAATGCCCGTGAGAGTGAGCAAGTTACTGAAGCTAACTTTGCATTTGTGCAGGATTGTTCTAAGTTGATTCAAACCATCCTTCTGAAAACTAAAAGCGTTGTTCAGGAGGCTACTATCAAGGCAACTAAGGAAGAAGCTGAACTTCAAGCCAAGGCaagagaagaggaagcgaagaaagagaaagaaATAGCTGATAAAGAGAGAGCTCTGGTAGCACTCATGAGAAAGAAACGGGAAAGCCAGGCTTCCACTTCACCAAGCCAAAACTCAAGTTCTTCTGCTAAGTCAAAGTCTGGTCTTTCAAAGGAGCTGTCCTCGTGCATTTCAGAAACAGCGTGGAAGGAATATTCTCGTTTAGTGACGTTTAAAAGTGAGATTGTCAAGTCAGCAGAACCTTTGCATACTGACAAGTCCTTGAAGCAGTTGAAGTTTGATCTGATGAAAGCTGTGTCTACACCAGTGAATTCTATTTCAGAGGAGTCTATTCTTGATAAGATCCAGCACCTAAACAAATTCCTCTCTGGGAGTTCTATTCAAGCTGGAAGCAAGCAGATTTCTATGGGCTTACATGAGGCAGCTCCGGGATACTGTAAAGAGCAGCTAGCTAAGAAATTTGTCGACCAAGGTTCCCAACAGGTTTCATCTAGTGTGAGCTCTGCTTTTCCCATTGCTGCAGTCATCATTGGAGTCTGGTCCAGGTTTCCTGATGTTGGAGATCTCATTTTAGTGAGATTCTATGAAGAATGTCCCTTTCTTGTTCCATTTTACATCCCAAAGGCTGCTGGCATGTCAGACACGGATTATCTTGCTACTATTGGTTATGTGTATAAAGACGGGCAAATAGAACAACAAGATAAATACCTCAAGCGTATGACTGGAATTGTGCGGCTTTATGCAGCAATTGTGTCCTCGGTACCCCCTCCATCAAGACAGCAATCAAAACCCCACCCTCATGGAATTGAGCGAGGTTGGATGTGGCTTGCAAGAATGTTGAACTTGCAACCACGAGCAGACTACACAGCTACAGCTCTCTATGAATTCCTTTCTGTAGCTGGACATGTGCTTATGGGACAGTACAAAAAACAGTTTGGGAAACTGCTCAACACTCTTGTCTTAGATTACATTCCCAAGATCGAAAAAGTCACAGCAAAGGAGAAAAGTGGGCCTGACTGTACCAAAATGCCACTATCCAGGCAACACTGCTATCTGTTCTACATGACAGTTGTACTTTCATCCTTTTTTAACTAA

Transcript

amic_s0022.g66.t1

GGAGGAGAGATCAAGGGGATACGTGGTGATGGAACAAGGATGCGAAGGAAGTGATAGCGAGAAAGAAGGATGCGCATAAGGAGATGTGTAAAAGTAGGACTGAGGCGAACAAGGCCAGGTACAAGAACATGAAGCCGGAATCGGGCAAAGAAGGTGGTCACGAAAGCAATGAAGGAGGCGGCTGAGCGGGAGCTGAGAGAGCTCAGTGAGCATCCGAACAAGGTGTTTAAGCTTGTGAAGTCAATGAAAAAGGATGGGAAGGATGTTGAGGGAGGAAGATGCATGAGAGGAAGCGACGGGAGGCTGAATTTCAGTAAGAAAGATAGAGGGAGAGTCTAGAAAGAGCACATGGAAAGAATAATGAATGAGGAGAATAAGTGGGATCAGAACGTGCAAGCAGACTTGGTGGAAGGGCCAGCTGAGAGGGTACCGGGCTAAGATGGCTGACTCGAGTGTGCTTTCAGGAAGAGGGTTTACCGTGAAAGCCAAAATAAATAGTGCCTCTCTTGTTAACGATGTTTTGCAAGGCTTAGCATCTTGTTCGAAGAACCGTTTACGATATGATACTCACTGGAAGCCTACACGCGAAGCTCTTGATGAGATATCTGGACCTCCGAAGTTGCTAGCAGATCTGTTAAGGTCTGTTTCACCTTCCAAAGACCTTTCTTTAGGGGAGACGAATACTTGTAGTTCCTTGGAGCATGGAAGTGAAACTCTAAATGAAGAGGAAGAGGAAGAGAAAGATCAAAATGGTGTTGTTTTTGATGAAATGGTTTCTTTCATCGGAAAAAAGGATTTGGAAATGCCTGAAGCCGGTTCCACATGTACAACCACAGAAAATACAAACGACGGATTAAGGGAAAAAGAACTTCTGGCATCCTATGATAATACTCACGTGGCCATTTACCGTTTAGAAACAGAAAAGCGGTTGAAAGCTCAAGAAGATCTTAACTCCAGAGAAGAGAAATTAAGAGAACATTCAATGAAACTTCAGACCAGGAAGCGTCGTTATTTGCAACAAAAAGAAAATGAACGAGTTGAGGAACGTCTTCAATCTTTACAAGCACTACAACTAGATGAGAAAAGAAAAAGTGAAGAGGCCAGGCTCAGACAAAAAAAGCTTGAGCAGTCGCATGCTGAGTACGCTCAGAAAGCTGTGAGACGAGTCAAAGAAGTTGAAGAACTGAGATTAAAAGTTCTCAGACAAGAGCAACTTTTCAAGAAACAGATGATGCAGTTAGAAGCCTTATTCAAAGGCATTGGAGACACTGCTTCAAGCATTCAACAGATTTTCCAAGAGTGTAGATATCAATCTGCTGTGGCAACATTTAAGCCAGAAATATCGCAAGAAGTTGCAAAAGTGCTGAAAATCTCCCAAAATGCACTTGACAATGCCCGTGAGAGTGAGCAAGTTACTGAAGCTAACTTTGCATTTGTGCAGGATTGTTCTAAGTTGATTCAAACCATCCTTCTGAAAACTAAAAGCGTTGTTCAGGAGGCTACTATCAAGGCAACTAAGGAAGAAGCTGAACTTCAAGCCAAGGCaagagaagaggaagcgaagaaagagaaagaaATAGCTGATAAAGAGAGAGCTCTGGTAGCACTCATGAGAAAGAAACGGGAAAGCCAGGCTTCCACTTCACCAAGCCAAAACTCAAGTTCTTCTGCTAAGTCAAAGTCTGGTCTTTCAAAGGAGCTGTCCTCGTGCATTTCAGAAACAGCGTGGAAGGAATATTCTCGTTTAGTGACGTTTAAAAGTGAGATTGTCAAGTCAGCAGAACCTTTGCATACTGACAAGTCCTTGAAGCAGTTGAAGTTTGATCTGATGAAAGCTGTGTCTACACCAGTGAATTCTATTTCAGAGGAGTCTATTCTTGATAAGATCCAGCACCTAAACAAATTCCTCTCTGGGAGTTCTATTCAAGCTGGAAGCAAGCAGATTTCTATGGGCTTACATGAGGCAGCTCCGGGATACTGTAAAGAGCAGCTAGCTAAGAAATTTGTCGACCAAGGTTCCCAACAGGTTTCATCTAGTGTGAGCTCTGCTTTTCCCATTGCTGCAGTCATCATTGGAGTCTGGTCCAGGTTTCCTGATGTTGGAGATCTCATTTTAGTGAGATTCTATGAAGAATGTCCCTTTCTTGTTCCATTTTACATCCCAAAGGCTGCTGGCATGTCAGACACGGATTATCTTGCTACTATTGGTTATGTGTATAAAGACGGGCAAATAGAACAACAAGATAAATACCTCAAGCGTATGACTGGAATTGTGCGGCTTTATGCAGCAATTGTGTCCTCGGTACCCCCTCCATCAAGACAGCAATCAAAACCCCACCCTCATGGAATTGAGCGAGGTTGGATGTGGCTTGCAAGAATGTTGAACTTGCAACCACGAGCAGACTACACAGCTACAGCTCTCTATGAATTCCTTTCTGTAGCTGGACATGTGCTTATGGGACAGTACAAAAAACAGTTTGGGAAACTGCTCAACACTCTTGTCTTAGATTACATTCCCAAGATCGAAAAAGTCACAGCAAAGGAGAAAAGTGGGCCTGACTGTACCAAAATGCCACTATCCAGGCAACACTGCTATCTGTTCTACATGACAGTTGTACTTTCATCCTTTTTTAACTAAAATCAGCTACATTTCTGTATCATTTGCATTATGAATGGAAAAATGTTATAATTATCaaaaatgatctgatcagttgaatgagttaaaataataattattgtgctgcacgtccagacctcacactcaagaagaattctttgacgcagtctgccaaatgacgtgaagtttccaaatttaaggttttagcacaatgttaacacacaacagtaaatttttatcctctaaatttcttcaatggcacttctacaagtccatttgcagcatgctctgtcaactataaaggctggggagaagaagcaataatcacacaatagtcaccatttcccaaaggcttattttcaagtgatgcttttgtttccattgctgttgttgttgcttaaactccctaATGATTATAAGTTTATTGCTTTGGCATCTAATTATTACACAATTGTCATACTGTATGTACATGTTAGTTGCATTTTTATAATAACTTGCATGTTATGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q53GS7	mRNA export factor GLE1 OS=Homo sapiens OX=9606 GN=GLE1 PE=1 SV=2
Q5RAS2	mRNA export factor GLE1 OS=Pongo abelii OX=9601 GN=GLE1 PE=2 SV=1
Q4KLN4	mRNA export factor GLE1 OS=Rattus norvegicus OX=10116 GN=Gle1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007995 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07817 all species →	GLE1	GLE1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038506 all species →	Homologous_superfamily	GLE1-like superfamily	Interproscan
IPR012476 all species →	Family	mRNA export factor GLE1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12960 all species →	GLE-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0000822 all species →	Molecular Function	inositol hexakisphosphate binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0044614 all species →	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18723	GLE1; nucleoporin GLE1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.