Detailed information of amic_s0022.g70.t2 in Acropora microphthalma

Genomic Location: sc0000022_pilon:1120236...1163693
NR annotation: XP_044163420.1, LOW QUALITY PROTEIN: usherin-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75445Usherin OS=Homo sapiens OX=9606 GN=USH2A PE=1 SV=3
Q2QI47Usherin OS=Mus musculus OX=10090 GN=Ush2A PE=1 SV=2
Q8K3K1Usherin OS=Rattus norvegicus OX=10116 GN=Ush2a PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002108 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan
PF00055
all species →		Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan
PF00041
all species →		fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR050440
all species →		FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR008211
all species →		DomainLaminin, N-terminalInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →		NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0009887
all species →		Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →		Biological Processtissue developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0022.g70.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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