Gene detail

Detailed information of amic_s0022.g85.t1 in Acropora microphthalma

Genomic Location: sc0000022_pilon:1426317...1434579
NR annotation: XP_029202489.2, alpha-(1,3)-fucosyltransferase fut-3-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0022.g85.t1

GACAAGGTAAAGAAAGGGAAATGAGCAAAAATTGATAAAGAAATCTCGACTTCGCTTTTGCCCAGGGAAACGTCTGGGAAACACAGAGCTCTCCCCGACATGAGTAACGATGCCAAGCCAATGAGTTGAACGAGATCTCTGATTTTCTGGATCTTGCCCGTGGCGAAAGGGGCCTAGAATGGATATGAAACGAAAACTTTTGCTCTCTGTCCTTCTGTTGTCGATCTTGGTTGTTGTCGTGGAGTACTTTGTTTTAAGTGACTTCGTCCCGTCGTCTCAACGCCAAGAGGAACGGAAAAGAAAGAATCAGAGACACGGACGAGGTCACTTTCCTTCTCGTCCACATAGAACAGAGCAAGTGGTGAAATTCACCCAGAGAATAAAAACCACGCAAGAAACGTCTGCACAGCAAATAAATGGCCCCTGGAGCAGCCAATACGAAGAATCGCAATTGCTGGTTAGACGGGCACGCAAGTCTGAAAAATTAAAGCGCCGCGAGCTTCGAAAAAGGGTTGAGAACTTTTTAGAGGAAAGATCAGGAAAGTCACAAGTAAAGGCAAACAATCAACGAACCATCACGATGGAAGCTAAAACAAAGGGCAATTCTAGAGGCGCGCAATCGGAAGACAAGCGAGTATTATTTTACACACCTCTTTTTGAGGAGACACCTTGGCAAGGACTTGATAACACAGCTGAGTTTACTCGCTTTAGGGGAAAGCCCTGTGCGGTGACTAGGTGCTCGTTAACTTACGATCCGCATTTATTTTCGCGCAGTGATGTTGTTGTCTTTCACGGTCAAGATATGCCTATGGAGTTCGAGTTAGAAGAACTTAACACACGCCGGCCTGAAGGACAGGTGTGGGTGTATCTTGTTCTTGAAAGTCCATTTAACGCCAGAGATACATATTTTTTCAATGACATGTTTAACTGGACAATAACGTACGAGTTGAATTCGGATATTTATTTGCCCTACGGCTCTTATGTAGCGCTCCAACCGGGGGAAAAATCCCCGTATCCGAAAATCGATCCAAGTAAGAAAGATCGCCTGCTTGTGTGGACGGTGAGTAATTGCGGGGGAATACGATATTCGTTTGTTAGCGAGCTACTGGACCATATACGTGTTGATATATTTGGTTGGTGTAGCGAGAATTTTTATCAACCTGAATTGCAGTCGGACAGTTGTGAGAGATACACCCAGGAATGTGACAATCTTCTCAAACGCTACAAGTTTCAATTGGCATTCGAGAATGGATTATGTGTGGATTACATCACGGAGAAATACTGGGGCTCTCCTTTGAGTTTGGGTATAATTCCGGTTGTGCTTGGTGGGGGAAATTACTCGAAATTAGCGATCCCTGGCTCATACATCAACGCTTTAGACTTCGATTCAGTGAAATCTTTGGCCGACTATCTGCTTGATCTGGATAAAAATGACACGGCGTACATGGAGTATTTCGCTTGGCATAAGAAGTTTAAGGTTGACGGATTCTTGCATACTTCTTCTTTTAATGAACATTATCCATGGACTTGTAATCTTTGTGAAAAGGCGCAGACTCCAGGAAGCAAGACTTATCCGAACCTTTACCAATATCGAGACCCAGAAAGACTTTGCGGCTTGCATGAGGACAAGATTTTTGAAATGATTGATCAAAACAGTGATCGATACGCGGCGCTGAGAAGGCAAAAGTTTAACTCTTACCaaggtgaggatgaaaatgaagacgaagatgtggatgaagacgacgatcaagatCGCGAAGGAACAGTATACGAAAGCCAGGAAGCAAGACAGAAAATCCAGAGAATTAATTAAAATAATTGACTATTAACCTCTTTGCTCAAAGGAATCCAGAGTAGATCGCATGTGTTAGAGCGgtttccaaatgactgtcgaaaaaccaaaaccaaagcaattactccgaccaatcacgacaggggcaaacagcgcgatgatccaatcacaattcctagaaattatctgcaacttgctcaaagcgcgggaaaaatcacgcgtacatggtgcgattggttttggttttggttttggttttgcttctcattggctggaaaactggcgcgagttttttaagccaatcatttagcgtaggaatcgcaatcacttaattactttcgacagtcatttgaaaactgctttaaagtgcTTTCGCGTTCGATCGAGGTGTTTCACTCCCGAGCATGCGAGGAGAAACAAAATGGCCACTTGATGTCGTAGTTGTTCTAGTTATTATAAGTACTTTTCAATGTCCGCCAGCTTTTCAGCCATTCGGCGAAAAATTGTTGGAGAGAAAATTAAGGTAAAGGCTTTGACAAAACATAAGCTTAAAGAAAGCCGGCTTAAGGCAGAGGAAGATAACAGAACAGAAAGGGGCAGTTGTAAATAAATAATAATGATTATCATTCAATATGTTTTTTTGCCCTCCTTTTCATTGAGCGAGGTTTGTCATTGTAAAGAGAAAGGGACATAAAAAACATATAATACAATTTTTTGCAACTGCTGAAAATTCGTTTTTTCGGCAGCAATTGTAAATTAGTTCCTCCAAGACGTTAAACAATTAATTTGTTTCTGATATTTCAATTAAGAGTCTCTCGTAAATATGTTAATAACTTCCATATTCGAACGCACTATTTATTAATACATGAAAATATTCAGAGTCGTTGGACACATAAGTAATTAAGATCTTATTTTTTTTAATTAATGATTTTTATGGATTAAAAATTGTTAACTTGATTAATATTTTTTGTCAGTTGCTAAACATGATGTGTGTAAAACCACTATTTTACTACCATCCACGGTAACATTTAATAAACTAATTTCAAGCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8HYJ7	4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase FUT5 OS=Gorilla gorilla gorilla OX=9595 GN=FUT5 PE=3 SV=1
P22083	Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens OX=9606 GN=FUT4 PE=1 SV=3
Q659K9	Alpha-(1,3)-fucosyltransferase 4 OS=Pan troglodytes OX=9598 GN=FUT4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000206 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17039 all species →	Glyco_tran_10_N	Fucosyltransferase, N-terminal	Domain	Interproscan
PF00852 all species →	Glyco_transf_10	Glycosyltransferase family 10 (fucosyltransferase) C-term	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031481 all species →	Domain	Fucosyltransferase, N-terminal	Interproscan
IPR001503 all species →	Family	Glycosyl transferase family 10	Interproscan
IPR038577 all species →	Homologous_superfamily	GT10-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11929 all species →	ALPHA- 1,3 -FUCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008417 all species →	Molecular Function	fucosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0036065 all species →	Biological Process	fucosylation	Interproscan
GO:0046920 all species →	Molecular Function	alpha-(1->3)-fucosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14464	FUT-1, FucTC; alpha-1,3-fucosyltransferase	EC:2.4.1.-	Various types of N-glycan biosynthesis	ko00513	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.