Gene detail

Detailed information of amic_s0023.g196.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:2037234...2042827
NR annotation: XP_029190521.2, uncharacterized protein LOC114957304 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0023.g196.t1

ATGGGAGAAGAACTACTTCCATATTCTGTTCTTAGTACAACTTCCACAATATGTGAACTTAAGTTTGGAACAGAACGCAAAATTGTAGCCCACTTCAAGGATAAGGATCCAGACACGGGATTTCCAACCAAAGTCATTCAATTAACAGAAAATCCAAACACGACCTCAGAAAAGCAAAGCTACCTTCAACAGATTTCACCTTTTGTCCACGTCAAGAACGATCGCGAGAAGGGCTCAATATACAAGAAGATTGAACTATTTTGGCCTCATGATCTACTAGAGAAAGGAATAGTTATTATTGATAGTCCTGGTGTTGGAGAGTCTGACATTATGGACGAAATCGTCACTGAGTACCTCCCTCGAGCCTTTGCCTTTATTTACACCATTAACAGTCCCAATGCCGGAGGAGTTCAGAAAGACAGACTTGAAAAGTTGCTGGAAAATGTTAGGAATACATTTCTCGATGGGAAGTGGCAATTGCCGGCAAAGTGTGCCCTTTTCGTTTGCAATAAATGGGACCAAGTACCGGAAAACGAGGATAAGGAGGTAAGATGTCACATAGTCAAGAAGCTGAAACAAAGTTGGCCCAACCTAGATCCTTCGACACAGATCACCTTCATGTCCACCTTGAATGCCACCACTGCGCAAAACCTTGGTATCGTTACAGAGGAATTTTCTTCGTTGATGGAAGGAATAAAATCCATGGTTTTGCAAGGCATCGAATGCCGGATGGAAATACACTGGAGGTGGTTGGATTTCCTTCTCTCTCGGATAATTTTCCAAGCAAAAGCATTCATCTCAAACGCTTTGAGAGATCGACGGGAGGTATCCACTAAAATGACAAAGATTCTAGAACGCTTGGCGGCCATTGAAACACAGCAAAACAAAGTAATGGAAGAACTTACAGAATACTTAGTTGAGCGGGTTGATGATGCTCTAACGCAGCTCTCTAAATATCTCTCTACGGAAGACGTCAGGAAGCGCTTTACCTCATGGACCCTGGACGACGCCCCGAAAGCAGAAATGTCTTGGGAAGCGACCGAAAACCTGATCAAGAAAACACTTTCAAGACGACTGCGAGACATCATTGAGCAATGGGAAGAGGATAACAAAGTATTTTCAACTGCTAGAGAATCCCTCATAAAACACTTTCAACAGCGTTACAATTTTGTCGAGGAGCAATTGCGGAATCTTCAGGGTGTTGTCATCGATGATAATGACATCGCTGATAACGTTGGTGGCCATGGAGCGAGCAACACAGATAGTAGTCTTACAGTTGCCCAGAAGGTCGTAGTTGGAGTTACAAGTCCACTATGGGTTCCCCTTAGCTTAGTCGCTTTGGTGATTGGTGCTCCAGTTGTAGGCATTATGGCTTTAACGGAAAAGTTGCAAGATAAAAAGAAATTGAAGGCATTCAAAGAAGACAGGTGTGCTTTCATGACGAAGGAGTCAGCAGAATATCTCCGATCTGTCAATGATAGCCTCGGTCTTCTAATGTTCGTAAAAGCACAACTTCGAGAAGCCGCGCTGTGTCTTGACAGGATTAAAGCCCGCATCCCAGAGCTGATCCAAGCTGACAAAATGTTATGTGAGCAACTCAACGACGAGACACGTGGGAAAAAGCAGGTACTTGATCTCTATCAGCCTATACTGAACATGGCATCTGTGCTAAGAGGCGATCTAGCAGTATTTGGATTCAAGGAAGTGTTTGGCGAGGAAATCAGCCTCAAGACATTGGACTGGCAAGAAGATGAATCCCATCGCCTTGGCTGTGGTGCATTTGCTGTTGTGTACAAAGGAATTATGACCAAATATGGACACAAGCAACCTGTTGCACTGAAGGTGTACAGCGAGGCACTCCATGCCATGAACGCCTGCGAAATCCTGGCCGAGGTTGAACTTTTGAGGAAATTGAACCACCCCTCCATTGTTAAGTTCCACGGTTCATCCCTGCTACGCGATAATAAAGAAGCGAGGATGATTTTAGTCATGGAAAAGTGCAAGGAGAGCTTGAAGAGTCGACTTTACGGGAAACCAGAACATTGTCCAGGAAAAAGTAGAAATCCTGAAGTCTTCAAAGCAGTTTGCAACTGGGCAATACAGATCACCGAAGCTCTGGATTACATACATAAGCAAGGAATTATCCACAGAGACCTTAAGCTGGACAACATCTTGTTATCACAAGACGACAGAGTGAAGGTCACGGACGTTGGTGTATCCAAACATGCCGTTGACGTAACAGGCACTTTGGCAGGAACTCCTGTTTACATAGCACCTGAGGTATTTCGTTCCGAGATATACGAATTCAGCGCAGATATCTACAGCCTGGGCATTATACTCTGGGAGATGTGGTACGGACAATCGCCCTTTACGAATATCAAGTTTAAAAATTTGACAGAGTTTGGTAATCTTGTGAACGAAGGTCGTCGTCCAGAGCATGACAATGACAACAAGTGCAAGCGACTTCATCATTCCTGGGAAGAGCTGGTGACGATGTGCTGGGGAAAAGATCCAACTAAGCGACCCACCGCGAAAAAATGCAAAGAGTTTATAACTAAACTGTATAAAACGCTCCAATGA

Transcript

amic_s0023.g196.t1

GGATGATAATATCCTTTCTTTACTGCAAACCAACGTTGGCAACATTGAAGAGAACGTCAAAAACCACAAATTACAACTGGCCCGCGAGGAATATTTTTTGCTTGTGGCAGGTGAGACAAGTTCAGGAAAAAGCAGTTTGATCAATCTAATTATGGGAGAAGAACTACTTCCATATTCTGTTCTTAGTACAACTTCCACAATATGTGAACTTAAGTTTGGAACAGAACGCAAAATTGTAGCCCACTTCAAGGATAAGGATCCAGACACGGGATTTCCAACCAAAGTCATTCAATTAACAGAAAATCCAAACACGACCTCAGAAAAGCAAAGCTACCTTCAACAGATTTCACCTTTTGTCCACGTCAAGAACGATCGCGAGAAGGGCTCAATATACAAGAAGATTGAACTATTTTGGCCTCATGATCTACTAGAGAAAGGAATAGTTATTATTGATAGTCCTGGTGTTGGAGAGTCTGACATTATGGACGAAATCGTCACTGAGTACCTCCCTCGAGCCTTTGCCTTTATTTACACCATTAACAGTCCCAATGCCGGAGGAGTTCAGAAAGACAGACTTGAAAAGTTGCTGGAAAATGTTAGGAATACATTTCTCGATGGGAAGTGGCAATTGCCGGCAAAGTGTGCCCTTTTCGTTTGCAATAAATGGGACCAAGTACCGGAAAACGAGGATAAGGAGGTAAGATGTCACATAGTCAAGAAGCTGAAACAAAGTTGGCCCAACCTAGATCCTTCGACACAGATCACCTTCATGTCCACCTTGAATGCCACCACTGCGCAAAACCTTGGTATCGTTACAGAGGAATTTTCTTCGTTGATGGAAGGAATAAAATCCATGGTTTTGCAAGGCATCGAATGCCGGATGGAAATACACTGGAGGTGGTTGGATTTCCTTCTCTCTCGGATAATTTTCCAAGCAAAAGCATTCATCTCAAACGCTTTGAGAGATCGACGGGAGGTATCCACTAAAATGACAAAGATTCTAGAACGCTTGGCGGCCATTGAAACACAGCAAAACAAAGTAATGGAAGAACTTACAGAATACTTAGTTGAGCGGGTTGATGATGCTCTAACGCAGCTCTCTAAATATCTCTCTACGGAAGACGTCAGGAAGCGCTTTACCTCATGGACCCTGGACGACGCCCCGAAAGCAGAAATGTCTTGGGAAGCGACCGAAAACCTGATCAAGAAAACACTTTCAAGACGACTGCGAGACATCATTGAGCAATGGGAAGAGGATAACAAAGTATTTTCAACTGCTAGAGAATCCCTCATAAAACACTTTCAACAGCGTTACAATTTTGTCGAGGAGCAATTGCGGAATCTTCAGGGTGTTGTCATCGATGATAATGACATCGCTGATAACGTTGGTGGCCATGGAGCGAGCAACACAGATAGTAGTCTTACAGTTGCCCAGAAGGTCGTAGTTGGAGTTACAAGTCCACTATGGGTTCCCCTTAGCTTAGTCGCTTTGGTGATTGGTGCTCCAGTTGTAGGCATTATGGCTTTAACGGAAAAGTTGCAAGATAAAAAGAAATTGAAGGCATTCAAAGAAGACAGGTGTGCTTTCATGACGAAGGAGTCAGCAGAATATCTCCGATCTGTCAATGATAGCCTCGGTCTTCTAATGTTCGTAAAAGCACAACTTCGAGAAGCCGCGCTGTGTCTTGACAGGATTAAAGCCCGCATCCCAGAGCTGATCCAAGCTGACAAAATGTTATGTGAGCAACTCAACGACGAGACACGTGGGAAAAAGCAGGTACTTGATCTCTATCAGCCTATACTGAACATGGCATCTGTGCTAAGAGGCGATCTAGCAGTATTTGGATTCAAGGAAGTGTTTGGCGAGGAAATCAGCCTCAAGACATTGGACTGGCAAGAAGATGAATCCCATCGCCTTGGCTGTGGTGCATTTGCTGTTGTGTACAAAGGAATTATGACCAAATATGGACACAAGCAACCTGTTGCACTGAAGGTGTACAGCGAGGCACTCCATGCCATGAACGCCTGCGAAATCCTGGCCGAGGTTGAACTTTTGAGGAAATTGAACCACCCCTCCATTGTTAAGTTCCACGGTTCATCCCTGCTACGCGATAATAAAGAAGCGAGGATGATTTTAGTCATGGAAAAGTGCAAGGAGAGCTTGAAGAGTCGACTTTACGGGAAACCAGAACATTGTCCAGGAAAAAGTAGAAATCCTGAAGTCTTCAAAGCAGTTTGCAACTGGGCAATACAGATCACCGAAGCTCTGGATTACATACATAAGCAAGGAATTATCCACAGAGACCTTAAGCTGGACAACATCTTGTTATCACAAGACGACAGAGTGAAGGTCACGGACGTTGGTGTATCCAAACATGCCGTTGACGTAACAGGCACTTTGGCAGGAACTCCTGTTTACATAGCACCTGAGGTATTTCGTTCCGAGATATACGAATTCAGCGCAGATATCTACAGCCTGGGCATTATACTCTGGGAGATGTGGTACGGACAATCGCCCTTTACGAATATCAAGTTTAAAAATTTGACAGAGTTTGGTAATCTTGTGAACGAAGGTCGTCGTCCAGAGCATGACAATGACAACAAGTGCAAGCGACTTCATCATTCCTGGGAAGAGCTGGTGACGATGTGCTGGGGAAAAGATCCAACTAAGCGACCCACCGCGAAAAAATGCAAAGAGTTTATAACTAAACTGTATAAAACGCTCCAATGACATTGCTTTATCACTTAAACGATTGGTTACTGAAAGGGTGCAGCCTGATTTAGAAGCGTTCTGAAAGTGTTGCTCAGTACTCAACTTGTGCATGCGCAAACATATAATGACCGAAGCTCTGAATTAACATAAGAAAAAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54L00	Probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0287001 PE=3 SV=1
Q8TDX7	Serine/threonine-protein kinase Nek7 OS=Homo sapiens OX=9606 GN=NEK7 PE=1 SV=1
Q9ES74	Serine/threonine-protein kinase Nek7 OS=Mus musculus OX=10090 GN=Nek7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000357 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR26392 all species →	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0023.g196.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.