Gene detail

Detailed information of amic_s0023.g205.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:2204974...2224515
NR annotation: XP_029190447.2, A disintegrin and metalloproteinase with thrombospondin motifs 18-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0023.g205.t1

ATGCCTTCCTCTACTGCCCTGCTGGCTGGTCTCGTTCTTAGCATCGTGAGAACTGAACTGGTTGCGTTACCAACACACAGAGACACAAAAAAAGCGGATCTTCACCATCGAATGACGAAACGAGAAATTGCAAAATACTTCGGAGCAAACTCACACGCTGAGGTGCCAGAATACGAGGTCGTTTCGCCATACCAAGCGGACGAAAACGGAGAATTCGTCACGCATGTTCTTCACAAACGCAGCCGCTCAAAACGATCTACCGGAGATCAAAGTTTCTTATTTTACAGTGTGAACGCCTTTGGTTTGTTGCTTCATTTAAACGTCACCAAAGCCCAACCTATTCTAGCACCGGGGACCATGGTGGAGACTATTCATGAAAATGGCAGTACAACAATCAAAGGGGCTCCAAAGAATGCGTTTTATACTGGACATGTGGTTTCAAAGCCAGGTTCAACAGCAGCTATTAGCAACAACAATGGATTGACCGGCATGATAAACTTAATGAATCAAGCCCTCTTTATTCATCCTCTTCCAAGTCATCTCGCACAGGATTATGGGTCAGCTAGTGGCGTCCAGCCTCATTTAATCTACAAACGGTCACTGAAAGATGTCTTGGGACAGCCATGCAACGTCGATACGGAAGGTGATAGGAGAGGACTAGAGAGAAACAGAATTAGACGGTCTTCATCCCCTGAAGGTTCACCGTCTCACAAACACTTAGAGGTTGCCATGGTAGCTGATGACTTGGTCGTGAAAAGGCATGGGGAAGAATATCTCGGCGCGTATTTGATGATGTTGGCTCACTTGGTGAACAACATGTTTCATGATGAAAGTGTTGGAGTCAAGAAGCTTAACGTGTTTGTGGTGAAACTAGTTATTAAGAAAGATGGGTTCGGTTATGACTCTTCGGCGAAAAATAGAAATCGACTTGGCCTCTTCGAAGCCTGGGCGGCACCGGGGCACACAGACAGCTCACCTCTGTCTAACAAAAATTCAACACTTCCCGACATTGCCGTTCTTCTAACAGGGTATGGATTTGGAGGAATAGCCGTCTTGGGCTCAACGTGTGGCGTAAAGTTTGGCATGACTGTTAACAATGACATGGGGCTGGCGTCTGCCATCATCATCGCTCATGAAACAGCACACACGTTTGGTCTCGGACACGATGGTAAAAGTGCGAGATGCAATGATGGAGTATACCTCATGTCCAGTGCCATCAGCCATGGCACAAATGCTTTCAAGTGGTCAGAATGCAGCAGAAAACTCATTCAAGACTTCTTAGCTGGTTCCGGTTCGTCTTGTTTGGATAATAATCCAACTGAATATGTTCATGAACCAAGTATATTCCACAACAAATTGCCGGGACAGATTGTGAACGCTAGTCTACAGTGCAACTTGCAATTTGGCATCGAATTCTATGCGTGTCCACATAAAACGGCTGACTGCAGTTCATTGTTTTGTACTAAAGACGGTTCCAGATGTACAAGTTTTGAGGCACCTCCTGTAGATGGCACCCGTTGTGGTAACAGACACTGGTGTATCAAGGGTGAATGTGTAGACGATGGTTCTCCTATGATTGATGGAGGGTGGAGTGAGTGGCAGACAGAATTTCAGCCGTGCAGCAGATCATGTGGTGGTGGCGTTACTTGGAGAACGAGGACATGCACCAATCCTGTGCCACAAAATGGTGGAGAAAAATGCCAAGGATCCAGCAAGGGACTTTGGGAAATGTGCAACACTCAGCCATGTCCTAAAGGACACATAGACTATCGGCTCCATCAATGTCGCAAACTTCAGCACACAACACAAGTTAGGTGGGAGGCAGATCCTTGCACTCTGGTATGCCAACGAGGTTTGGTGGCTACAGTTCGTGGTCGCGTCAAAGATGGTACTCGATGTAGCAGTGATCCAAAAGTACATGATGTCTGCATTGAAGGAGTTTGTAAGTCCGTTGGGTGTGATTTAAAGCTGAATTCTGGGCTCAAGTATGACCGCTGTGCGATTTGTGGAGGAAACAGTTCTATGTGCAGCTATGTCCATGGATCCTACACGAATCAATGGCGTCGATGGGGGCCAAATGCCCCAGACGAAATTGTCACCATTCCTAAAGGTTCAACAAACATTTTTGCCCAAGTTAAGGCAAAAACTCGGAACCTTCTCGGGGTTAAAGATGATAAGAACAACTGGGTCTACCGCGTGGGATACACTTGGAGTACTGTAGTAGCAGCAGCTGGGACTCGGGTAGCTTACGACCACAGAGCCTACTTATGGGACGATAAAGTGGAAATCCCAGGACCAACTAAACACGAACTCAAACTCAAATACGTTTTTATCCAAGGTAGAAATCCTGGAGTGGAATATCACTTTTTTACAGCAAACAAGAGTCAAGTAAACGCTGATGAAGTTCATTGGAGCACTGGTGCCTGGGAATTGTGCTCTGAAGATTGTGCTGGAGGTTACCAGCAGAGACTCGTTGAGTGCGTGCGTAAAGATGATAGAAGCTACGTAAACGAGAAGATGTGTATCAAAACACAAAGTAAACCAATGACAAAGAGACCTTGTAATCTAAAACCATGTGCAGCAGAGTGGTACGAATCAGGTTGGCGACCTTGTTCCCAGACTTGTGGCAAAGGAATTCAGCTGAGACAGATTGTGTGTAGACGGAAGATTAGCCAAGACCAATATGAGACAGTAAATGACTCATCATGCGATTCAGACAAACCAACAGGGATTCTGCAGCAAGAATGCAACAAAGTGGCTTGCCCCGCTGAGTGGAAAGCGTTAGCCTGGAGTGAGTGCTCTCGATCGTGCGGAGGAGGAGAAATGACACGCACTGTAAGGTGTATGAAACTCAACTCTTATGGCAAATTAGTCACTGTCTTAAACCACCAATGTATGCACGCACCTAAACCAATAACAATTGAGGAATGCAACACGGATATCAACTGCCCACGTGCTATAATGGGCTCAGACGGTAAAGAATTTATACCTTTGGGCTGTTACAAGGACTCCAACAACTATCGTGCTCTGCCAGAATTTGTGGCAAATTTTCGTGGGAGAATTGATTGGTCCAAGATGGAAAAAACAGTTCAAAAATGCGCACATCAAGTTGTCCTTAAAAATTCCACATACAAGGTATTTGCGATCCAGTATTACGGAGAATGTTGGTCAGGGAATGAGGGAGAGAAGACCTACAGCGAATATGGTTGGTCTCGCAACTGTTGGCAGGGCGTGGGTGGATCGAATACTAATTTTGTTTACGAATTTGTTGATGGCAAGAAGAACCCTTGA

Transcript

amic_s0023.g205.t1

GAGACACAGATCTGTTTAAAGGGGCGCAAAACACTACAGTTCACTTTACACTTGGACGCTTCAGTCGAGAGTTTGTCTTTCTCGCGAACTTTCCCAGGCAAAAACCAATACGAAATCCTCTTTTATCCGGGCTGACATTGCTGGTTGCCGCAGCTCTGGCAGAGAGAACTTCACAGGCCGAGACCTTTTTCTTCAGAAAGTCCTAGTTTCAAAAAATGCCTTCCTCTACTGCCCTGCTGGCTGGTCTCGTTCTTAGCATCGTGAGAACTGAACTGGTTGCGTTACCAACACACAGAGACACAAAAAAAGCGGATCTTCACCATCGAATGACGAAACGAGAAATTGCAAAATACTTCGGAGCAAACTCACACGCTGAGGTGCCAGAATACGAGGTCGTTTCGCCATACCAAGCGGACGAAAACGGAGAATTCGTCACGCATGTTCTTCACAAACGCAGCCGCTCAAAACGATCTACCGGAGATCAAAGTTTCTTATTTTACAGTGTGAACGCCTTTGGTTTGTTGCTTCATTTAAACGTCACCAAAGCCCAACCTATTCTAGCACCGGGGACCATGGTGGAGACTATTCATGAAAATGGCAGTACAACAATCAAAGGGGCTCCAAAGAATGCGTTTTATACTGGACATGTGGTTTCAAAGCCAGGTTCAACAGCAGCTATTAGCAACAACAATGGATTGACCGGCATGATAAACTTAATGAATCAAGCCCTCTTTATTCATCCTCTTCCAAGTCATCTCGCACAGGATTATGGGTCAGCTAGTGGCGTCCAGCCTCATTTAATCTACAAACGGTCACTGAAAGATGTCTTGGGACAGCCATGCAACGTCGATACGGAAGGTGATAGGAGAGGACTAGAGAGAAACAGAATTAGACGGTCTTCATCCCCTGAAGGTTCACCGTCTCACAAACACTTAGAGGTTGCCATGGTAGCTGATGACTTGGTCGTGAAAAGGCATGGGGAAGAATATCTCGGCGCGTATTTGATGATGTTGGCTCACTTGGTGAACAACATGTTTCATGATGAAAGTGTTGGAGTCAAGAAGCTTAACGTGTTTGTGGTGAAACTAGTTATTAAGAAAGATGGGTTCGGTTATGACTCTTCGGCGAAAAATAGAAATCGACTTGGCCTCTTCGAAGCCTGGGCGGCACCGGGGCACACAGACAGCTCACCTCTGTCTAACAAAAATTCAACACTTCCCGACATTGCCGTTCTTCTAACAGGGTATGGATTTGGAGGAATAGCCGTCTTGGGCTCAACGTGTGGCGTAAAGTTTGGCATGACTGTTAACAATGACATGGGGCTGGCGTCTGCCATCATCATCGCTCATGAAACAGCACACACGTTTGGTCTCGGACACGATGGTAAAAGTGCGAGATGCAATGATGGAGTATACCTCATGTCCAGTGCCATCAGCCATGGCACAAATGCTTTCAAGTGGTCAGAATGCAGCAGAAAACTCATTCAAGACTTCTTAGCTGGTTCCGGTTCGTCTTGTTTGGATAATAATCCAACTGAATATGTTCATGAACCAAGTATATTCCACAACAAATTGCCGGGACAGATTGTGAACGCTAGTCTACAGTGCAACTTGCAATTTGGCATCGAATTCTATGCGTGTCCACATAAAACGGCTGACTGCAGTTCATTGTTTTGTACTAAAGACGGTTCCAGATGTACAAGTTTTGAGGCACCTCCTGTAGATGGCACCCGTTGTGGTAACAGACACTGGTGTATCAAGGGTGAATGTGTAGACGATGGTTCTCCTATGATTGATGGAGGGTGGAGTGAGTGGCAGACAGAATTTCAGCCGTGCAGCAGATCATGTGGTGGTGGCGTTACTTGGAGAACGAGGACATGCACCAATCCTGTGCCACAAAATGGTGGAGAAAAATGCCAAGGATCCAGCAAGGGACTTTGGGAAATGTGCAACACTCAGCCATGTCCTAAAGGACACATAGACTATCGGCTCCATCAATGTCGCAAACTTCAGCACACAACACAAGTTAGGTGGGAGGCAGATCCTTGCACTCTGGTATGCCAACGAGGTTTGGTGGCTACAGTTCGTGGTCGCGTCAAAGATGGTACTCGATGTAGCAGTGATCCAAAAGTACATGATGTCTGCATTGAAGGAGTTTGTAAGTCCGTTGGGTGTGATTTAAAGCTGAATTCTGGGCTCAAGTATGACCGCTGTGCGATTTGTGGAGGAAACAGTTCTATGTGCAGCTATGTCCATGGATCCTACACGAATCAATGGCGTCGATGGGGGCCAAATGCCCCAGACGAAATTGTCACCATTCCTAAAGGTTCAACAAACATTTTTGCCCAAGTTAAGGCAAAAACTCGGAACCTTCTCGGGGTTAAAGATGATAAGAACAACTGGGTCTACCGCGTGGGATACACTTGGAGTACTGTAGTAGCAGCAGCTGGGACTCGGGTAGCTTACGACCACAGAGCCTACTTATGGGACGATAAAGTGGAAATCCCAGGACCAACTAAACACGAACTCAAACTCAAATACGTTTTTATCCAAGGTAGAAATCCTGGAGTGGAATATCACTTTTTTACAGCAAACAAGAGTCAAGTAAACGCTGATGAAGTTCATTGGAGCACTGGTGCCTGGGAATTGTGCTCTGAAGATTGTGCTGGAGGTTACCAGCAGAGACTCGTTGAGTGCGTGCGTAAAGATGATAGAAGCTACGTAAACGAGAAGATGTGTATCAAAACACAAAGTAAACCAATGACAAAGAGACCTTGTAATCTAAAACCATGTGCAGCAGAGTGGTACGAATCAGGTTGGCGACCTTGTTCCCAGACTTGTGGCAAAGGAATTCAGCTGAGACAGATTGTGTGTAGACGGAAGATTAGCCAAGACCAATATGAGACAGTAAATGACTCATCATGCGATTCAGACAAACCAACAGGGATTCTGCAGCAAGAATGCAACAAAGTGGCTTGCCCCGCTGAGTGGAAAGCGTTAGCCTGGAGTGAGTGCTCTCGATCGTGCGGAGGAGGAGAAATGACACGCACTGTAAGGTGTATGAAACTCAACTCTTATGGCAAATTAGTCACTGTCTTAAACCACCAATGTATGCACGCACCTAAACCAATAACAATTGAGGAATGCAACACGGATATCAACTGCCCACGTGCTATAATGGGCTCAGACGGTAAAGAATTTATACCTTTGGGCTGTTACAAGGACTCCAACAACTATCGTGCTCTGCCAGAATTTGTGGCAAATTTTCGTGGGAGAATTGATTGGTCCAAGATGGAAAAAACAGTTCAAAAATGCGCACATCAAGTTGTCCTTAAAAATTCCACATACAAGGTATTTGCGATCCAGTATTACGGAGAATGTTGGTCAGGGAATGAGGGAGAGAAGACCTACAGCGAATATGGTTGGTCTCGCAACTGTTGGCAGGGCGTGGGTGGATCGAATACTAATTTTGTTTACGAATTTGTTGATGGCAAGAAGAACCCTTGATGGAATTTGTCACTTTTTGGCGCCACAATAATGCTGTTCCTTACCTAATTGCTGTAGAATAGTAATAAGAAGATCCTTCATGGAAATAAGAGACAATAAAATTATTTGCTGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4VC17	A disintegrin and metalloproteinase with thrombospondin motifs 18 OS=Mus musculus OX=10090 GN=Adamts18 PE=2 SV=2
Q8TE57	A disintegrin and metalloproteinase with thrombospondin motifs 16 OS=Homo sapiens OX=9606 GN=ADAMTS16 PE=1 SV=3
O15072	A disintegrin and metalloproteinase with thrombospondin motifs 3 OS=Homo sapiens OX=9606 GN=ADAMTS3 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19236 all species →	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF01562 all species →	Pep_M12B_propep	Reprolysin family propeptide	Family	Interproscan
PF05986 all species →	ADAMTS_spacer1	ADAM-TS Spacer 1	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF17771 all species →	ADAMTS_CR_2	ADAMTS cysteine-rich domain 2	Domain	Interproscan
PF13688 all species →	Reprolysin_5	Metallo-peptidase family M12	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045371 all species →	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR013273 all species →	Family	ADAMTS/ADAMTS-like	Interproscan
IPR002870 all species →	Domain	Peptidase M12B, propeptide	Interproscan
IPR010294 all species →	Domain	ADAMTS/ADAMTS-like, Spacer 1	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR041645 all species →	Domain	ADAMTS, cysteine-rich domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08621	ADAMTS6; a disintegrin and metalloproteinase with thrombospondin motifs 6	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.