Gene detail

Detailed information of amic_s0023.g208.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:2249304...2261370
NR annotation: XP_029190550.2, tyrosine-protein kinase RYK-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0023.g208.t1

CAAATAGCGGAGGAAACAGTGGCCTGTCAGCCTCACGCATGAAAAGAATTATTGCTTTTAATCATGAGTTAAAGCGTGAAAATGGACCACTTTGTTTTGACCAGAGTACCCTGACAACAAAAAGCCGATTTGGAAAGCTGACAGAGGATGAATCAAATTAATCTTTTCCTTCACTGTCTCGTTTTGACATGTGTTATTTTTCCGATCCTATGCTCCCTAGATTTTTACATCAACAGCACAGAAGCCAAGAAAATTCTTGGGCTCGCAGGCGATATTTACTACGTACGTGACGGGAAAATTCAAAGCAATGCCGTCAATTTTATTATGACCGTTCCGCCTCGAGTGAACTGCTTGAGGTTTGTGTGGTACTCCGGATCCAAACAAGTGCCTTCAAATGATATGAGTTATTTTTACACTTTGCAAATGAAATCTGACACTCCTGATCTTTTGCTGAAACCAAAAGTGGATATTAAAGAAGGTGGCTCTGTTCCAAACATGAAGAAAGAATTTTGTGTGAATATGACTTGCCGAGGAACAAAACAAGGCACAGCGCATTTGCTTATCCAGATAAATATCACTTCGTCAAAGTTTAAGTTTGGTCAAAAAACCAGGGTGTTGAACCTGAGGAGGATAAAAACATGCCGAAAAGGTGGTGTGATAGCCACTTCCGAGAAGCCAACACTTTCCAGACAAATAGCTGATTCTGAATCAAGTACATCTGCTCCCCTGATGGACAAAACAACAGTCTTCTATATTGCAGTGGGAGTGGCTTGCAGTACTATACTGGTCATTGCTCTAGCAGTAGCTGCTATTCATGTCCATTCCATGCCAAATCCAAGCAAAGAGTCAGGTGATTTAGATGCTGTTAATCCTGGGCGATCTAGCTTGGCCAAAACACCACTGATTACTGTTCAACAATCAAATCAAGATGAAAATGATGCAGAACAAAACAATCTTATTCCAAACAACTTAGCCAATAACCTTAATGTTCCTGTGGACACTGACATACCTGACATACAACCCAGCCCTGCATTAAATGATCTAAACAAAACTGTCCCTGCTTCAAATGGAGATTTTCCTCATGTGCGGCCAAGATTACCAGGTGGCCTACCTGTGCTAGAAAGTATGTTGAGCATTACACCAAGTGATGGTTATTACAGTGGAGGTGGACTGCAGTCAACACAGAAGGGAAAATACCGTAACAGAGACATGAAAGTTGAGCTGCAGGATTTAACAGTAGAAATGGATAGAATTACTTTGGCGGAGCTGTTAGAAGAAGGAACGTTTGCTCGTATCTACAGTGGAGTTTTAACTGGACCTGGAGAAAAACAACAGCGAAGTGTTTTAATAAAAACTGTTTCTGGATTAGCATCAACAGAGCAAGTCAATTTGTTGTTGATAGAAAGTTCAATGCTAAAGGACTTCACACACAGAAATCTGCTGCCTGTCATGGCAGTATGTCTAGAAGATGAGAAACAACCATTAGTAATGTTCCCTTTCATGAACAGAGGAAATTTGAAATTGTTCCTGAAGAAATCAAGGTCACCAGAAGGGGGCTCAAAGTCTCTGACAACAGCAGATCTTGTCCATGTTGCTATTCAAATTGCTAAAGGACTGCAGTACTTAGCAAGACGAAGAGTTGTTCATAAAGACGTGGCTGCCAGGAACTGTGTAATTGATGATGACCTTAACGTCAAGGTGACTGATTGCGCCTTGTCCAGAGACTTGTTTCCTCAAGACTATTGTTGCCTTGGAGACAATGAAAACAGGCCTGTCAAATGGATGGCTGTTGAAAGCTTGGAACATGGCCGATATTCTCTCGCTAGTGATGGGTGGTCTTACGGAGTCCTCCTTTGGGAACTGATGACACTGGGCCAGCAGCCATACGGGAATATCGATGCATTTGAAATGCTGAACTTTCTCAAACAAGGCCACAGGATCTCACAGCCAGTCAACTGTCCCGATGAACTGTTTACAGTCATTGCGTGTTGTTGGGCTTTGTCAGAGGATGAGCGACCAAGCCTTAGCCAGCTCATTGTGTGCTTGACTGATTTTTTGAATGCTTTGAGCAATTTCGTTTGAGAAATATTTGAGTGGAAATTAAATCGTTTAAAAAGAAACGATTAAAGAGAAACATCTGTTGTTTTTGCCGAGGCTCCTCAGATTGGTCTCGCGCATTTCAACGAGCTCCTGAACAATTGATAAGAGGTAGTCGATTTTGTAATGTATACTCTTGATATAATGAAAAAACATCAGCATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01887	Tyrosine-protein kinase RYK OS=Mus musculus OX=10090 GN=Ryk PE=1 SV=2
P34925	Tyrosine-protein kinase RYK OS=Homo sapiens OX=9606 GN=RYK PE=1 SV=3
Q27324	Tyrosine-protein kinase Drl OS=Drosophila melanogaster OX=7227 GN=drl PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005491 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF02019 all species →	WIF	WIF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR003306 all species →	Domain	WIF domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR038677 all species →	Homologous_superfamily	WIF domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0007409 all species →	Biological Process	axonogenesis	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05128	RYK; RYK receptor-like tyrosine kinase	EC:2.7.10.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.